FROM annot-base

ARG USER_ID
ARG GROUP_ID

RUN apt remove -y openmpi-bin libopenmpi-dev && apt install -y mpich libmpich-dev

# building maker
COPY maker-3.01.03.tgz /opt
RUN tar zxvf /opt/maker-3.01.03.tgz -C /opt/
RUN printf "Y\n\n\n" | perl /opt/maker/src/Build.PL && \
	/opt/maker/src/Build install && \
	/opt/maker/src/Build blast
COPY maker_annotation.sh /usr/local/bin/
ENV PATH="/opt/maker/bin:${PATH}"

RUN chown -R $USER_ID:$GROUP_ID /opt/maker /opt/Augustus

SHELL ["/bin/bash", "-c"]