FROM annot-base

ARG USER_ID
ARG GROUP_ID

# fitild (compiled with g++-4.7 since code is old)
COPY fitild.tar.gz /opt
RUN tar zxvf /opt/fitild.tar.gz -C /opt/ && cat /opt/fitild/table/IldModel*.txt > /opt/spaln-Ver.2.4.2/table/IldModel.txt
ENV PATH="/opt/fitild/bin:${PATH}"

# copy over in-house pipeline
COPY eukannotpass.tar.gz /opt
RUN tar zxvf /opt/eukannotpass.tar.gz -C /opt/
ENV PATH="/opt/eukannotpass:${PATH}"

RUN chown -R $USER_ID:$GROUP_ID /opt/spaln-Ver.2.4.2 /opt/fitild

SHELL ["/bin/bash", "-c"]