| pfam8 | PF04000 | pfam04000, Sas10_Utp3, Sas10/Utp3 family | 142 | 7e-09 | 23% (59/247) | Sas10_Utp3 | | 7 | | |
| pfam9 | PF06213 | pfam06213, CobT, Cobalamin biosynthesis protein CobT | 130 | 2e-07 | 22% (38/167) | CobT | | 8 | | |
| pfam10 | PF04006 | pfam04006, Mpp10, Mpp10 protein | 131 | 1e-07 | 20% (46/222) | Mpp10 | | 9 | | |
| Annotation Name | Nonsense-mediated mRNA decay protein 2 related cluster |
| Score | 4855&emsp |
| E-value | 0.0 |
| % Sequence Identity | 89% (974/1089) |
| Locus | NMD2 |
| EC Number | |
| COG Function | |
| KEGG Pathway | |
| Source | Accession | Description | Score | E-value | % Sequence Identity | Locus | EC Number | Informative Hit | Function/Pathway | GeneOntology |
| uniref90 | UniRef90_P38798 | Nonsense-mediated mRNA decay protein 2 related cluster | 4855 | 0.0 | 89% (974/1089) | | | 1 | | GO:0000184|mRNA catabolism, nonsense-mediated decay|TAS; GO:0003723|RNA binding|IEA; GO:0005515|protein binding|TAS; GO:0005737|cytoplasm|TAS; GO:0005844|polysome|IDA; GO:0006402|mRNA catabolism|TAS; GO:0006412|protein biosynthesis|IEA |
| nr | EAL02295 | potential nonsense-mediated mRNA decay factor [Candida albicans SC5314] gb|EAL02168.1| potential nonsense-mediated mRNA decay factor [Candida albicans SC5314] | 1314 | 1e-143 | 34% (293/844) | | | 7 | | |
| cog | YHR077c | | 4855 | 0.0 | 89% (974/1089) | | | 0 | | |
| kegg | cal:orf19.864 | NMD2; protein involved in decay of mRNA containing nonsense codons | 1314 | 1e-143 | 34% (293/844) | NMD2 | | 3 | | |
| smart | 00543 | smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G); Also occurs in NMD2p and CBP80 | 263 | 2e-24 | 17% (37/209) | MIF4G | | 1 | | |
| smart2 | 00017 | smart00017, OSTEO, Osteopontin; Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite | 113 | 5e-07 | 22% (40/175) | OSTEO | | 2 | | |
| smart3 | 00730 | smart00730, PSN, Presenilin, signal peptide peptidase, family; Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease | 93 | 1e-04 | 16% (20/125) | PSN | | 3 | | |
| smart4 | 00724 | smart00724, TLC, TRAM, LAG1 and CLN8 homology domains | 97 | 4e-05 | 15% (20/129) | TLC | | 4 | | |
| pfam | PF02854 | pfam02854, MIF4G, MIF4G domain | 279 | 9e-25 | 17% (37/209) | MIF4G | | 1 | | |
| pfam2 | PF05066 | pfam05066, RNA_pol_delta, DNA-directed RNA polymerase delta subunit | 135 | 5e-08 | 29% (27/92) | RNA_pol_delta | | 10 | | |
| pfam3 | PF04050 | pfam04050, Upf2, Up-frameshift suppressor 2 | 213 | 4e-17 | 27% (57/211) | Upf2 | | 2 | | |
| pfam4 | PF05793 | pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | 156 | 2e-10 | 23% (51/217) | TFIIF_alpha | | 3 | | |
| pfam5 | PF05792 | pfam05792, Candida_ALS, Candida agglutinin-like protein (ALS) | 160 | 6e-11 | 28% (42/149) | Candida_ALS | | 4 | | |
| pfam6 | PF04931 | pfam04931, DNA_pol_V, DNA polymerase V | 153 | 4e-10 | 22% (28/123) | DNA_pol_V | | 5 | | |
| pfam7 | PF04484 | pfam04484, DUF566, Family of unknown function (DUF566) | 141 | 9e-09 | 35% (41/114) | DUF566 | | 6 | | |