Score E
Sequences producing significant alignments: (bits) Value
gb|AAD35262.1|AE001702_2 (AE001702) conserved hypothetical ... 407 e-113
emb|CAB45354.1| (AL079345) putative DNA-binding protein [St... 170 9e-42
gb|AAD22519.1|AF061257_1 (AF061257) AT-rich DNA-binding pro... 153 1e-36
gb|AAF10515.1|AE001946_7 (AE001946) conserved hypothetical ... 150 9e-36
dbj|BAA75386.1| (AB013375) YdiH [Bacillus halodurans] 139 2e-32
dbj|BAA19721| (D88802) ydiH [Bacillus subtilis] >gi|2632910... 133 9e-31
gb|AAD36497.1|AE001794_13 (AE001794) conserved hypothetical... 98 8e-20
gb|AAF18948.1|AF155805_2 (AF155805) Cps9E [Streptococcus suis] 50 2e-05
gi|3135688 (AF064070) putative epimerase/dehydratase WbiI [... 43 0.002
gi|2326958 (U56723) LpsB [Rhizobium etli] 43 0.003
gb|AAD36615.1|AE001801_2 (AE001801) lipopolysaccharide bios... 41 0.010
dbj|BAA85069.1| (AB028134) ORF9S [Shigella sonnei] 37 0.15
dbj|BAA85014.1| (AB025970) ORF9P [Plesiomonas shigelloides] 37 0.15
dbj|BAA33644.1| (AB012957) unknown [Vibrio cholerae] 36 0.33
dbj|BAA30800.1| (AP000007) 352aa long hypothetical protein ... 35 0.57
pir||S51266 trsG protein - Yersinia enterocolitica >gi|6336... 35 0.57
gi|2983635 (AE000727) carbamoyl-phosphate synthase large su... 34 0.75
sp|O05252|YUFN_BACSU HYPOTHETICAL LIPOPROTEIN YUFN PRECURSO... 34 0.75
gi|3033365 (U47057) putative epimerase/dehydratase [Vibrio ... 34 0.98
gi|2649664 (AE001039) conserved hypothetical protein [Archa... 34 0.98
prf||2209416K ORF 10 [Vibrio cholerae] 34 0.98
emb|CAB38868.1| (AJ007638) phosphofructokinase alpha-subuni... 34 1.3
gi|3322336 (AE001192) capsular polysaccharide biosynthesis ... 34 1.3
gi|2649053 (AE000998) conserved hypothetical protein [Archa... 33 2.2
sp|P09975|YCF2_MARPO HYPOTHETICAL 259 KD PROTEIN (ORF 2136)... 33 2.2
dbj|BAA30354| (AP000005) 534aa long hypothetical nodulation... 32 2.9
gi|1685053 (U77302) AF/R2 fimbrial major subunit Afr2G [Esc... 32 2.9
sp|Q58484|AROE_METJA SHIKIMATE 5-DEHYDROGENASE >gi|2129280|... 32 3.8
sp|P80053|DHE3_SULSO GLUTAMATE DEHYDROGENASE (GDH) >gi|4785... 32 3.8
dbj|BAA18854| (D90917) hypothetical protein [Synechocystis ... 32 4.9
gb|AAF22846.1|AF210152_3 (AF210152) BaiCD [Clostridium sp. ... 31 6.5
emb|CAA07661.1| (AJ007747) putative nucleotide sugar epimer... 31 6.5
emb|CAA73377| (Y12877) ribonucleotide reductase [Thermotoga... 31 6.5
gb|AAC96666.1| (U42580) A298L [Paramecium bursaria Chlorell... 31 6.5
pir||S70683 bplL protein - Bordetella pertussis >gi|992982|... 31 6.5
sp|Q07083|RPSC_MYXXA RNA POLYMERASE SIGMA-C FACTOR >gi|5386... 31 6.5
emb|CAB49276.1| (AJ248284) SUCCINYL-COA SYNTHETASE ALPHA CH... 31 8.5
gi|2649402 (AE001022) conserved hypothetical protein [Archa... 31 8.5
dbj|BAA09716| (D63413) sarcosine oxidase [Arthrobacter sp.]... 31 8.5
sp|P22988|LDHA_HORVU L-LACTATE DEHYDROGENASE A (LDH-A) >gi|... 31 8.5
sp|P20286|G3P_PYRWO GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENAS... 31 8.5
gb|AAD35262.1|AE001702_2 (AE001702) conserved hypothetical protein [Thermotoga maritima]
Length = 208
Score = 407 bits (1035), Expect = e-113
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MAEKIPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKR 60
MAEKIPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKR
Sbjct: 1 MAEKIPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKR 60
Query: 61 GVGYNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSK 120
GVGYNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSK
Sbjct: 61 GVGYNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSK 120
Query: 121 IGKEAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVK 180
IGKEAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVK
Sbjct: 121 IGKEAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVK 180
Query: 181 IKVSVPVENIDITASLRVLTFEIVRRNS 208
IKVSVPVENIDITASLRVLTFEIVRRNS
Sbjct: 181 IKVSVPVENIDITASLRVLTFEIVRRNS 208
emb|CAB45354.1| (AL079345) putative DNA-binding protein [Streptomyces coelicolor
A3(2)]
Length = 258
Score = 170 bits (426), Expect = 9e-42
Identities = 88/204 (43%), Positives = 124/204 (60%), Gaps = 3/204 (1%)
Query: 5 IPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKRGVGY 64
IP+ RL Y L L + V VSSEELA + ++++RKD SY G +G RGVGY
Sbjct: 16 IPEATVARLPLYLRALTALSERSVPTVSSEELAAAAGVNSAKLRKDFSYLGSYGTRGVGY 75
Query: 65 NVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKE 124
+VE+L I LG+ ++W +V+VG GN+G A+ANY +GFR+ + D+DP GK
Sbjct: 76 DVEYLVYQISRELGLTQDWPVVIVGIGNLGAALANYGGFASRGFRVAALIDADPGMAGKP 135
Query: 125 AAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKV- 183
A G+ V ELEK +++ GV IGVIA PA AQ++ +RL AG+ ILNFAP + V
Sbjct: 136 VA-GIPVQHTDELEKIIQDDGVSIGVIATPAGAAQQVCDRLVAAGVTSILNFAPTVLNVP 194
Query: 184 -SVPVENIDITASLRVLTFEIVRR 206
V V +D++ L++L F R+
Sbjct: 195 EGVDVRKVDLSIELQILAFHEQRK 218
gb|AAD22519.1|AF061257_1 (AF061257) AT-rich DNA-binding protein p25 [Thermus aquaticus]
Length = 211
Score = 153 bits (383), Expect = 1e-36
Identities = 89/203 (43%), Positives = 122/203 (59%), Gaps = 5/203 (2%)
Query: 4 KIPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKRGVG 63
K+P+ RL++Y LE L +GV SSE+L + A Q+RKDLSYFG +G RGVG
Sbjct: 2 KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGTRGVG 61
Query: 64 YNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGK 123
Y V L + ILG+ ++W L +VG G +G A+A+Y E F + G FD DP K+G+
Sbjct: 62 YTVPVLKRELRHILGLNRKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGR 120
Query: 124 EAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKV 183
G+ + V L + V +EI ++ VP E AQ+ A+ L AGIKGILNFAPV ++V
Sbjct: 121 PVRGGV-IEHVDLLPQRVPGR-IEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEV 178
Query: 184 --SVPVENIDITASLRVLTFEIV 204
V VEN+D A L L+F I+
Sbjct: 179 PKEVAVENVDFLAGLTRLSFAIL 201
gb|AAF10515.1|AE001946_7 (AE001946) conserved hypothetical protein [Deinococcus radiodurans]
Length = 234
Score = 150 bits (375), Expect = 9e-36
Identities = 87/217 (40%), Positives = 121/217 (55%), Gaps = 21/217 (9%)
Query: 5 IPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKRGVGY 64
IP R+V+Y LE L + V SS ELARR + Q+RKDL+YFG FG RG+GY
Sbjct: 7 IPTATVGRVVTYIRVLEELEAQNVLRASSGELARRAGVTPFQVRKDLTYFGRFGTRGIGY 66
Query: 65 NVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKE 124
V L + LG+ + W +V+VG G +G A+ANY + F+ +G+FD P +G+E
Sbjct: 67 TVAVLRRELLRALGLDQTWNVVIVGMGRLGHAIANYPGASDYQFQNVGLFDVAPDVVGRE 126
Query: 125 AAPGLTVSDVSELEKFVEE-----HGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPV 179
GLT+ +S+L FV V++G++ VPAEHAQ A+ L AG+ GILNFAPV
Sbjct: 127 VR-GLTIQHMSQLGPFVASVAGTPRQVDMGLLTVPAEHAQAAAQALVAAGVGGILNFAPV 185
Query: 180 KIKV---------------SVPVENIDITASLRVLTF 201
++ V VEN+D A ++ L F
Sbjct: 186 VLQTQDLHLPEAFAAPGRREVTVENVDFLAGMKRLAF 222
dbj|BAA75386.1| (AB013375) YdiH [Bacillus halodurans]
Length = 211
Score = 139 bits (347), Expect = 2e-32
Identities = 78/200 (39%), Positives = 117/200 (58%), Gaps = 4/200 (2%)
Query: 4 KIPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKRGVG 63
KIP+ +KRL YY LE L G + VSS EL+ + + ++ IR+D SYFG GK+G G
Sbjct: 7 KIPQATAKRLPLYYRFLENLHASGKQRVSSSELSEAVKVDSATIRRDFSYFGALGKKGYG 66
Query: 64 YNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGK 123
YNV +L + L + K++++G GN+G A+ NY K +I+ FD D KIG
Sbjct: 67 YNVNYLLTFFRKTLHQDELTKVMLIGVGNLGTALLNYNFSKNNHTQIVMAFDVDREKIGN 126
Query: 124 EAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKV 183
+ G+ + ++ LE + V + ++ VPA AQ+ A+RL AG+KGILNF P +I V
Sbjct: 127 TVS-GVKIENLDNLENKITS-DVSVAILTVPAAVAQKTADRLVNAGVKGILNFTPARIAV 184
Query: 184 --SVPVENIDITASLRVLTF 201
V V +ID++ L+ L +
Sbjct: 185 PEHVRVHHIDLSVELQALIY 204
dbj|BAA19721| (D88802) ydiH [Bacillus subtilis] >gi|2632910|emb|CAB12416|
(Z99107) ydiH [Bacillus subtilis]
Length = 215
Score = 133 bits (332), Expect = 9e-31
Identities = 75/200 (37%), Positives = 116/200 (57%), Gaps = 5/200 (2%)
Query: 4 KIPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKRGVG 63
KIP+ +KRL YY L+ L G + VSS EL+ + + ++ IR+D SYFG GK+G G
Sbjct: 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKGYG 66
Query: 64 YNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGK 123
YNV++L + L + ++++G GN+G A +Y K +I FD + SKIG
Sbjct: 67 YNVDYLLSFFRKTLDQDEMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGT 126
Query: 124 EAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKV 183
E G+ V ++ +LE+ V++ V ++ VPA AQ I +RL GIKGILNF P ++ V
Sbjct: 127 EVG-GVPVYNLDDLEQHVKDESV--AILTVPAVAAQSITDRLVALGIKGILNFTPARLNV 183
Query: 184 --SVPVENIDITASLRVLTF 201
+ + +ID+ L+ L +
Sbjct: 184 PEHIRIHHIDLAVELQSLVY 203
gb|AAD36497.1|AE001794_13 (AE001794) conserved hypothetical protein [Thermotoga maritima]
Length = 204
Score = 97.5 bits (239), Expect = 8e-20
Identities = 65/200 (32%), Positives = 102/200 (50%), Gaps = 9/200 (4%)
Query: 1 MAEKI--PKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFG 58
MAE I P+ +RL Y LE +SS+E+AR L++ +RKD SY G
Sbjct: 1 MAEMIHLPRSTFERLKMYRKVLEATKKP---YISSDEIARFLEINPDLVRKDFSYLNCQG 57
Query: 59 KRGVGYNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDP 118
K VGY+VE L + ++ GV +++VGA ++ RA+ + K G +++ +FD++
Sbjct: 58 KPRVGYDVEELRKELDDLFGVNNTTNMIIVGANDLARALLSLDFSKA-GVKVVAVFDTER 116
Query: 119 SKIGKEAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAP 178
+GK V ++ LE+ + EI + V + AQ AE L + GIK + NF
Sbjct: 117 ENVGKFIGE-FAVRELDVLERVIRRFDAEIAALCVSKDRAQATAEFLIEKGIKAVWNFTG 175
Query: 179 VKIKV--SVPVENIDITASL 196
V + + V V D+T SL
Sbjct: 176 VHLDLPEGVIVVEEDLTQSL 195
gb|AAF18948.1|AF155805_2 (AF155805) Cps9E [Streptococcus suis]
Length = 608
Score = 50.0 bits (117), Expect = 2e-05
Identities = 26/90 (28%), Positives = 49/90 (53%)
Query: 84 KLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKFVEE 143
+++VVGAG+ G N ++ F I+GI D DP+K+G + + +++ + VEE
Sbjct: 150 RILVVGAGDGGNIFINTVKDRKLNFEIVGIVDRDPNKLGTFIRTAKVLGNRNDIPRLVEE 209
Query: 144 HGVEIGVIAVPAEHAQEIAERLEKAGIKGI 173
V+ IA+P+ + +E + +E G+
Sbjct: 210 LAVDQVTIAIPSLNGKEREKIVEICNTTGV 239
gi|3135688 (AF064070) putative epimerase/dehydratase WbiI [Burkholderia
pseudomallei]
Length = 637
Score = 43.0 bits (99), Expect = 0.002
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 74 GEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSD 133
G ++G K ++++GAG+ G + A + + +R+ G+ D DP+K G+E +
Sbjct: 141 GGLIGQGKP--VLILGAGSAGASFAR-ELSRSGEWRLAGLLDDDPAKHGREVYGYKVLGS 197
Query: 134 VSELEKFVEEHGVEIGVIAVPA---EHAQEIAERLEKAGIKGIL 174
+ E+ + E E +IA+P+ E + A +AG++ ++
Sbjct: 198 IGEVADWAEAAKAEYAIIAIPSASVEAQRRFATLCVRAGVRAMV 241
gi|2326958 (U56723) LpsB [Rhizobium etli]
Length = 683
Score = 42.6 bits (98), Expect = 0.003
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 69 LYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPG 128
L D IL K+++ GAGN GR +A + ++G D DP ++ G
Sbjct: 154 LGDTYQRILHQNTLAKVLIYGAGNAGRQLAG-ALTNSAELNVVGYLDDDP-RLKGGIMGG 211
Query: 129 LTVSDVSELEKFVEEHGVEIGVIAVPAEHAQ---EIAERLEKAGI 170
L + D S+L E GV ++A+P+ Q EI E + KA +
Sbjct: 212 LPIYDPSDLPVLAETLGVHNVLLALPSASRQRRNEILEHIRKARV 256
gb|AAD36615.1|AE001801_2 (AE001801) lipopolysaccharide biosynthesis protein [Thermotoga
maritima]
Length = 605
Score = 40.6 bits (93), Expect = 0.010
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 79 VKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELE 138
V E +++++GAG+ G ++ +I+ D P KIG++ + +
Sbjct: 130 VPGEKRILIIGAGDAGVSILEEFEKHPHLGKIVAFVDDSPRKIGRKVRGVPVFGPIEKTM 189
Query: 139 KFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGI 173
+FVE+ V+ VIA+P+ E+ L+ +K +
Sbjct: 190 EFVEKMNVDEIVIAIPSASRAEMERILKSIDLKKV 224
dbj|BAA85069.1| (AB028134) ORF9S [Shigella sonnei]
Length = 639
Score = 36.7 bits (83), Expect = 0.15
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 78 GVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSEL 137
GVK +++ GAG GR + +M+ K + + D +P ++ K G+TV +L
Sbjct: 136 GVKGSAPVLIYGAGESGRQLLP-ALMQAKEYFPVAFVDDNP-RLHKAVIHGVTVYPSDKL 193
Query: 138 EKFVEEHGVEIGVIAVPA---EHAQEIAERLE 166
V+ +G++ ++A+P+ Q++ RLE
Sbjct: 194 SYLVDRYGIKKILLAMPSVSKSQRQKVITRLE 225
dbj|BAA85014.1| (AB025970) ORF9P [Plesiomonas shigelloides]
Length = 639
Score = 36.7 bits (83), Expect = 0.15
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 78 GVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSEL 137
GVK +++ GAG GR + +M+ K + + D +P ++ K G+TV +L
Sbjct: 136 GVKGSAPVLIYGAGESGRQLLP-ALMQAKEYFPVAFVDDNP-RLHKAVIHGVTVYPSDKL 193
Query: 138 EKFVEEHGVEIGVIAVPA---EHAQEIAERLE 166
V+ +G++ ++A+P+ Q++ RLE
Sbjct: 194 SYLVDRYGIKKILLAMPSVSKSQRQKVITRLE 225
dbj|BAA33644.1| (AB012957) unknown [Vibrio cholerae]
Length = 646
Score = 35.6 bits (80), Expect = 0.33
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 85 LVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKFVEEH 144
+++ GAG+ GR +A + + ++++G D D + + GL V D+S V+++
Sbjct: 146 VLIYGAGSAGRQLA-IALRNSENYKVVGFIDQDKT-LENTVIMGLQVYDISRAAYLVDKY 203
Query: 145 GVEIGVIAVPA 155
V ++AVP+
Sbjct: 204 DVTQVLLAVPS 214
dbj|BAA30800.1| (AP000007) 352aa long hypothetical protein [Pyrococcus horikoshii]
Length = 352
Score = 34.8 bits (78), Expect = 0.57
Identities = 32/111 (28%), Positives = 54/111 (47%), Gaps = 21/111 (18%)
Query: 84 KLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKFVE- 142
K++++GAGNIGRA+A +K++ IG +++ + KE A L V D S +K VE
Sbjct: 5 KVLILGAGNIGRAIA--WDLKDEFDVYIGDVNNENLEKVKEFATPLKV-DASNFDKLVEV 61
Query: 143 EHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKVSVPVENIDIT 193
E+ + A+P G L F +K + V+ +D++
Sbjct: 62 MKEFELVIGALP-----------------GFLGFKSIKAAIKSKVDMVDVS 95
pir||S51266 trsG protein - Yersinia enterocolitica >gi|633698|emb|CAA87704|
(Z47767) WbcP [Yersinia enterocolitica]
Length = 638
Score = 34.8 bits (78), Expect = 0.57
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 78 GVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSEL 137
GV+ + +V+ GAG GR + + + F I F D K+ K G+TV +L
Sbjct: 137 GVRGQIPVVIYGAGASGRQLLPALMQASEYFPIA--FVDDNPKLHKAVIHGVTVYPSEKL 194
Query: 138 EKFVEEHGVEIGVIAVPA 155
E + +G++ ++A+P+
Sbjct: 195 EYLIGRYGIKKVLLAMPS 212
gi|2983635 (AE000727) carbamoyl-phosphate synthase large subunit [Aquifex
aeolicus]
Length = 537
Score = 34.4 bits (77), Expect = 0.75
Identities = 29/106 (27%), Positives = 47/106 (43%), Gaps = 9/106 (8%)
Query: 74 GEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAP----GL 129
GE++G+ KE+ L A + A Y + EKG I + D D KI + A G
Sbjct: 374 GEVMGIDKEFGLAYYKA----QLSAGYR-LPEKGNLFISVADRDKPKILELAKEFEKLGF 428
Query: 130 TVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILN 175
+ S KF++EHGV + +E + + + I ++N
Sbjct: 429 GIYATSGTYKFLKEHGVNAKRVLKVSEGRPNVVDMIINGEIHLVIN 474
sp|O05252|YUFN_BACSU HYPOTHETICAL LIPOPROTEIN YUFN PRECURSOR >gi|1934811|emb|CAB07936|
(Z93937) unknown [Bacillus subtilis]
>gi|2635650|emb|CAB15143| (Z99120) similar to ABC
transporter (lipoprotein) [Bacillus subtilis]
Length = 350
Score = 34.4 bits (77), Expect = 0.75
Identities = 31/101 (30%), Positives = 50/101 (48%), Gaps = 7/101 (6%)
Query: 61 GVGYNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSK 120
GVGY +E D+I EI +K ++ A VA+ T +++G ++G+ + SK
Sbjct: 98 GVGYLME---DSISEIADQRKNTNFAIIDAVVDKDNVASITFKEQEGSFLVGVAAALSSK 154
Query: 121 IGKEAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEI 161
GK G S++ ++KF E G GV AV + E+
Sbjct: 155 SGKIGFVGGMESEL--IKKF--EVGFRAGVQAVNPKAVVEV 191
gi|3033365 (U47057) putative epimerase/dehydratase [Vibrio cholerae O139]
>gi|3724325|dbj|BAA33614.1| (AB012956) unknown [Vibrio
cholerae]
Length = 646
Score = 34.0 bits (76), Expect = 0.98
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 85 LVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKFVEEH 144
+++ GAG+ GR +A + + +++ G D+D + + G+ V DVS V+++
Sbjct: 146 VLIYGAGSAGRQLA-IALRNSENYKVAGFIDNDKT-LENTVIMGMQVHDVSRAAYLVDKY 203
Query: 145 GVEIGVIAVPA 155
V ++AVP+
Sbjct: 204 DVTQILLAVPS 214
gi|2649664 (AE001039) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 666
Score = 34.0 bits (76), Expect = 0.98
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 73 IGEILGVKKEWKLVVVGAGNIGRAVANYTV---MKEKGFRIIGIFDSDPSKIGKEAAPGL 129
+G+I K + V+GA V N V M K RI I + +G +A P
Sbjct: 216 VGDISFFFKARSVAVIGASTNPIKVGNSVVRSLMSNKNLRIYPINPNASEILGLKAYP-- 273
Query: 130 TVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGIL 174
+V + E+ +I ++ VPAE + +AG+KG++
Sbjct: 274 SVKSLPEVP--------DIAIVTVPAEFVLDAVREAAEAGVKGVV 310
prf||2209416K ORF 10 [Vibrio cholerae]
Length = 227
Score = 34.0 bits (76), Expect = 0.98
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 85 LVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKFVEEH 144
+++ GAG+ GR +A + + +++ G D+D + + G+ V DVS V+++
Sbjct: 146 VLIYGAGSAGRQLA-IALRNSENYKVAGFIDNDKT-LENTVIMGMQVHDVSRAAYLVDKY 203
Query: 145 GVEIGVIAVPA 155
V ++AVP+
Sbjct: 204 DVTQILLAVPS 214
emb|CAB38868.1| (AJ007638) phosphofructokinase alpha-subunit [Candida albicans]
Length = 987
Score = 33.6 bits (75), Expect = 1.3
Identities = 38/154 (24%), Positives = 70/154 (44%), Gaps = 24/154 (15%)
Query: 29 EVVSSEELARRLDLKASQIRKDLSYFGEFGKRGVGYNVEHLYDAIGEILGVKKEWKLVVV 88
E +S+++ + + L+ + D YF + +YD + L K + +V
Sbjct: 572 EAISNKDFDKAMSLRDNSFYDDYRYFRDIS----------IYDDGSKQLSEDKRLNIAIV 621
Query: 89 --GAGNIG-----RAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKFV 141
GA + G RAVA Y++ +G ++ + D + K LT DV E +
Sbjct: 622 HVGAASAGLNAATRAVALYSL--SRGHKLYAVQDGFAGLV-KGDLKNLTWMDV---EGWH 675
Query: 142 EEHGVEIGVI-AVPAEHAQEIAERLEKAGIKGIL 174
G EIG ++P+++ ++A L+K I+G+L
Sbjct: 676 SLGGSEIGTNRSLPSQNIGKVAYNLQKFNIQGLL 709
gi|3322336 (AE001192) capsular polysaccharide biosynthesis protein (cap5D)
[Treponema pallidum]
Length = 538
Score = 33.6 bits (75), Expect = 1.3
Identities = 35/122 (28%), Positives = 55/122 (44%), Gaps = 11/122 (9%)
Query: 85 LVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKFVEEH 144
+ +VGAG G +A K+ +I D DP KIG + + E+ + V
Sbjct: 48 IYIVGAGFAGSVLAREIQTKKVLGTVIAFLDDDPCKIGSNLHGVPVLGPIFEVARIVRIT 107
Query: 145 GVEIGVIAVPA---EHAQEIAERLEKAGIKGILNFAPVKIKVSVPVENIDITASLRVLTF 201
+ +IA+P+ E ++I L AG F +K+ ++ + ID TA L V T
Sbjct: 108 PHDHALIAIPSISIERLRDIYLTLRAAG------FTVIKLLPAL-AQIIDGTAHL-VQTR 159
Query: 202 EI 203
EI
Sbjct: 160 EI 161
gi|2649053 (AE000998) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 881
Score = 32.8 bits (73), Expect = 2.2
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 85 LVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGL----TVSDVSELEKF 140
+ V+GA V T +R G+ + P +A G+ T+S+V +
Sbjct: 200 VAVIGASRDVEKVGGRTFYNLLTYRFNGV--AYPVNRAAKAIMGVRAYPTISEVPD---- 253
Query: 141 VEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGIL 174
VE+ V++VP ++A E+AE K G+K +L
Sbjct: 254 ----EVELAVLSVPVKYALEVAEECGKKGVKALL 283
sp|P09975|YCF2_MARPO HYPOTHETICAL 259 KD PROTEIN (ORF 2136) >gi|81341|pir||A05037
hypothetical protein 2136 - liverwort (Marchantia
polymorpha) chloroplast >gi|11665|emb|CAA28078| (X04465)
ORF2136 [Marchantia polymorpha]
Length = 2136
Score = 32.8 bits (73), Expect = 2.2
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 5 IPKPVSKRLVSYYMCLERLLDEGVEVVSSEELARRLDLKAS--QIRKDLSYFGEFGKRGV 62
+PK V L+S L+++++ + +S + L LK Q++++L + EFG R +
Sbjct: 1523 LPKKVDPALISPNR-LDKIINVRLFNISQRKKQFPLLLKKKNFQLKENLFFLNEFGSRTM 1581
Query: 63 GYNVEHLYDAIGEIL 77
GYN+ L E+L
Sbjct: 1582 GYNLRDLSALTNEVL 1596
dbj|BAA30354| (AP000005) 534aa long hypothetical nodulation protein [Pyrococcus
horikoshii]
Length = 534
Score = 32.5 bits (72), Expect = 2.9
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 65 NVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRII-----GIFDSDPS 119
N + AI E+ G+ E KL V+G + + EK + GI D++
Sbjct: 180 NPRYELSAIIELNGLTFENKLKVIGTEATKKLAEFFEFPLEKAKEVSSNLKRGIMDNELE 239
Query: 120 KIGKEAAPGLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGI 170
K E A S + LE+ +EE G+E+ +P +A +A+ ++ I
Sbjct: 240 KKAIEIA----ASAQAHLERLIEEMGLELKKYELPIAYAGGVAQNVKANAI 286
gi|1685053 (U77302) AF/R2 fimbrial major subunit Afr2G [Escherichia coli]
Length = 279
Score = 32.5 bits (72), Expect = 2.9
Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 3/72 (4%)
Query: 63 GYNVEHLYDAIGEILGVKKEWKLVVVGAGNIGR--AVANYTVMKEKGFRIIGIFDSDPSK 120
G+ V + + E G K W V AG+ G A+ NY++ +G + FDS +
Sbjct: 205 GWTVTEMMNKWNEFTGQNKSWIQTVYSAGSSGTIDALYNYSLSIAQGQTLEAEFDSPVTT 264
Query: 121 IGKEAAPGLTVS 132
K +AP LT+S
Sbjct: 265 TTKWSAP-LTIS 275
sp|Q58484|AROE_METJA SHIKIMATE 5-DEHYDROGENASE >gi|2129280|pir||C64435 shikimate
5-dehydrogenase (EC 1.1.1.25) - Methanococcus jannaschii
>gi|1591730 (U67551) shikimate 5-dehydrogenase (aroE)
[Methanococcus jannaschii]
Length = 282
Score = 32.1 bits (71), Expect = 3.8
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 20/133 (15%)
Query: 35 ELARRLDLKASQIRKDLSYFG-------EFGKRGVGYNVEHLYD--AIGEILGVKKEWKL 85
E+ + LD +I KD G E GK +GYN + + A+ E +G K+ +
Sbjct: 72 EIMKYLD----EIDKDAQLIGAVNTIKIEDGK-AIGYNTDGIGARMALEEEIGRVKDKNI 126
Query: 86 VVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKF----V 141
V+ GAG RAVA + + K+ I + KE A L E KF V
Sbjct: 127 VIYGAGGAARAVA-FELAKDNNIIIANRTVEKAEALAKEIAEKLN-KKFGEEVKFSGLDV 184
Query: 142 EEHGVEIGVIAVP 154
+ GV+I + A P
Sbjct: 185 DLDGVDIIINATP 197
sp|P80053|DHE3_SULSO GLUTAMATE DEHYDROGENASE (GDH) >gi|478591|pir||S20286 glutamate
dehydrogenase - Sulfolobus solfataricus
>gi|243120|bbs|76301 glutamate dehydrogenase, GDH
[Sulfolobus solfataricus, strain MT-4, Peptide, 421 aa]
>gi|228559|prf||1806206A Glu dehydrogenase [Sulfolobus
solfataricus]
Length = 421
Score = 32.1 bits (71), Expect = 3.8
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 61 GVGYNVEHLYDAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSK 120
G+G +A + +G +E ++++ G GN+G + + E G +I+G+ DS
Sbjct: 193 GLGVATIAKEEAANKFIGGVEEARVIIQGFGNVGYYAGKF--LSEMGAKIVGVSDSKGGV 250
Query: 121 IGKEAAPGLTVSDVSELEK 139
I ++ G+ V E+++
Sbjct: 251 INEK---GIDVGKAIEIKE 266
dbj|BAA18854| (D90917) hypothetical protein [Synechocystis sp.]
Length = 470
Score = 31.7 bits (70), Expect = 4.9
Identities = 34/119 (28%), Positives = 50/119 (41%), Gaps = 16/119 (13%)
Query: 84 KLVVVGAGN--------IGRAVANYTVMKEKGFRIIGIFDS--DPSKIGKEAAPGLTVSD 133
++V++GA + R Y VM +I+GI D PS G+ G+ + +
Sbjct: 25 RVVILGAAGRDFHNFNQVYRDNPRYEVMAFTATQIVGIADRRYPPSLAGELYPHGIPILE 84
Query: 134 VSELEKFVEEHGVEIGVIA---VPAEHAQEIAERLEKAGIKGILNFAP--VKIKVSVPV 187
+LE F EH V+ V A V +A R G +L P IK +VPV
Sbjct: 85 EGQLENFCREHRVDQIVFAYSDVSHHQVMHLASRSLAIGADFVL-LGPNQTMIKTTVPV 142
gb|AAF22846.1|AF210152_3 (AF210152) BaiCD [Clostridium sp. TO-931]
Length = 639
Score = 31.3 bits (69), Expect = 6.5
Identities = 23/102 (22%), Positives = 50/102 (48%), Gaps = 12/102 (11%)
Query: 19 CLERLLDEGVEVVSSEELARRLDLKASQIRKDLSYFGEFGKRGVG-------YNVEHLYD 71
C++ L+DE V++ EE+ ++ + + + D++ + +N++H ++
Sbjct: 211 CIDELMDE---VMTEEEIVEFIN-RCADLGVDVADLSRGNAQSFATVYEVPPFNLQHGFN 266
Query: 72 AIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGI 113
I I +KK+ K+ V+G G I V+ + F ++GI
Sbjct: 267 -IENIYNIKKQIKIPVMGVGRINTGEMANQVIADGKFDLVGI 307
emb|CAA07661.1| (AJ007747) putative nucleotide sugar epimerase/ dehydratase
[Bordetella bronchiseptica]
Length = 624
Score = 31.3 bits (69), Expect = 6.5
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 85 LVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKFVEEH 144
+++ GAG G +A + +R + + D D K + GL V +L K ++ H
Sbjct: 152 VLIYGAGGAGSQLA-MALRAGPHYRPVAMLDDDKRK-HRLVVNGLRVYPPEQLPKLIDRH 209
Query: 145 GVEIGVIAVPAEHAQEIAERLEKA 168
+ +IA+P+ ++I +E A
Sbjct: 210 NIRQLLIAMPSAPPKQIRSIVEAA 233
emb|CAA73377| (Y12877) ribonucleotide reductase [Thermotoga maritima]
>gi|4980610|gb|AAD35212.1|AE001698_1 (AE001698)
ribonucleotide reductase, B12-dependent [Thermotoga
maritima]
Length = 827
Score = 31.3 bits (69), Expect = 6.5
Identities = 27/126 (21%), Positives = 57/126 (44%), Gaps = 16/126 (12%)
Query: 71 DAIGEILGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAP--- 127
D+I EI KE+ L+ G +G +N++ ++ KG + G GK + P
Sbjct: 141 DSIEEIFEAVKEYALITKVGGGVG---SNFSELRPKGSFVAGTH-------GKASGPVSF 190
Query: 128 -GLTVSDVSELEKFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVKIKVSVP 186
+ S +S +++ G +G++ + +E + ++ + +LNF + V P
Sbjct: 191 MHVFNSAISVVKQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNF--FNLSVGFP 248
Query: 187 VENIDI 192
++ +I
Sbjct: 249 MDKKEI 254
gb|AAC96666.1| (U42580) A298L [Paramecium bursaria Chlorella virus 1]
Length = 225
Score = 31.3 bits (69), Expect = 6.5
Identities = 34/142 (23%), Positives = 71/142 (49%), Gaps = 18/142 (12%)
Query: 73 IGEILG----VKKEWKLVVVGAGNIGRAVAN-YTVMKEKGFRIIGI---FD--SDPSKIG 122
+ EILG +++ + V +GA + G A+ N + +MK ++ + FD +D ++I
Sbjct: 35 VEEILGRLGCLRRNQRCVEIGAPD-GIAIPNTFNLMKNHEMHVLYLETEFDPETDIAEIE 93
Query: 123 KEAAPGLTVSDVSELEKFVEEHGV--EIGVIAVPAEHAQEIAERLEKAGIKGILNFAPVK 180
KE + ++ ++E +EEHG+ E V+++ A + + EK + ++ P+
Sbjct: 94 KEFRITVVKTNSKDVETVIEEHGMPKEFAVMSIDANGLE--YDIFEKTKFEPLIVVVPIN 151
Query: 181 IKVSVPVE---NIDITASLRVL 199
K+ E +I + AS + +
Sbjct: 152 PKIRPTEEQTPSIGVRASFKTM 173
pir||S70683 bplL protein - Bordetella pertussis >gi|992982|emb|CAA62256|
(X90711) gene referred to as bplL in Mol. Microbiol.
19:37-52(1996) [Bordetella pertussis]
>gi|1589232|prf||2210367P bplL gene [Bordetella
pertussis]
Length = 624
Score = 31.3 bits (69), Expect = 6.5
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 85 LVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTVSDVSELEKFVEEH 144
+++ GAG G +A + +R + + D D K + GL V +L K ++ H
Sbjct: 152 VLIYGAGGAGSQLA-MALRTGPHYRPVAMLDDDKRK-HRLVVNGLRVYPPEQLPKLIDRH 209
Query: 145 GVEIGVIAVPAEHAQEIAERLEKA 168
+ +IA+P+ ++I +E A
Sbjct: 210 NIRQLLIAMPSAPPKQIRSIVEAA 233
sp|Q07083|RPSC_MYXXA RNA POLYMERASE SIGMA-C FACTOR >gi|538660|pir||A40587 probable
transcription initiation factor sigma sigC - Myxococcus
xanthus >gi|293866 (L12992) sigma factor [Myxococcus
xanthus]
Length = 295
Score = 31.3 bits (69), Expect = 6.5
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 8/50 (16%)
Query: 20 LERLLDEGVEVVSSEELARRLDLKASQIR--------KDLSYFGEFGKRG 61
LE++ VV++EE+AR+L++KAS++R +DLS G+ G
Sbjct: 142 LEKMGAGDANVVNAEEIARKLNVKASEVREMEQRMGGRDLSLDAPMGEDG 191
emb|CAB49276.1| (AJ248284) SUCCINYL-COA SYNTHETASE ALPHA CHAIN related protein
[Pyrococcus abyssi]
Length = 472
Score = 30.9 bits (68), Expect = 8.5
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 85 LVVVGA----GNIGRAV-ANYTVMKEKGFRIIGIFDSDPSKIGKEAAPGLTV-SDVSELE 138
+ ++GA G +G + N+ KEKG I+ +P + G V DVSEL
Sbjct: 19 VAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKL---DEIDGYKVYHDVSELP 75
Query: 139 KFVEEHGVEIGVIAVPAEHAQEIAERLEKAGIKGIL 174
++ VIA+PA E +++ + GIK ++
Sbjct: 76 D-----DTDLAVIAIPAPAVPETMKKIAEKGIKAVI 106
gi|2649402 (AE001022) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 664
Score = 30.9 bits (68), Expect = 8.5
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 146 VEIGVIAVPAEHAQEIAERLEKAGIKGIL 174
V++ VIAVP+++A E+ + + G+KGI+
Sbjct: 282 VDLAVIAVPSKNAIEVVKECAEKGVKGII 310
dbj|BAA09716| (D63413) sarcosine oxidase [Arthrobacter sp.]
>gi|3116221|dbj|BAA25926| (AB007122) sarcosine oxidase
[Arthrobacter sp.]
Length = 389
Score = 30.9 bits (68), Expect = 8.5
Identities = 13/42 (30%), Positives = 27/42 (63%), Gaps = 2/42 (4%)
Query: 77 LGVKKEWKLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDP 118
+ +KK++ ++VVGAG++G A Y + ++G + + + DP
Sbjct: 1 MSIKKDYDVIVVGAGSMGMAAGYY--LSKQGVKTLLVDSFDP 40
sp|P22988|LDHA_HORVU L-LACTATE DEHYDROGENASE A (LDH-A) >gi|100588|pir||A36070 L-lactate
dehydrogenase (EC 1.1.1.27) chain A - barley >gi|167067
(M55685) L-lactate dehydrogenase [Hordeum vulgare]
Length = 356
Score = 30.9 bits (68), Expect = 8.5
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 84 KLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEA 125
K+ V+GAGN+G A+A T++ + I + D+ P K+ EA
Sbjct: 45 KISVIGAGNVGMAIAQ-TILTQNLADEIALVDALPDKLRGEA 85
sp|P20286|G3P_PYRWO GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
>gi|66030|pir||DEQYG glyceraldehyde-3-phosphate
dehydrogenase (NAD(P)+) (EC 1.2.1.-) - Pyrococcus woesei
>gi|151735 (M83988) glyceraldehyde 3-phosphate
dehydrogenase [Pyrococcus woesei]
Length = 334
Score = 30.9 bits (68), Expect = 8.5
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 84 KLVVVGAGNIGRAVANYTVMKEKGFRIIGIFDSDPSKIGKEAAP-GLTVSDVSE--LEKF 140
K+ + G G IG+ VA Y V K+ +IG+ + P A G+ V SE L +F
Sbjct: 4 KVGINGYGTIGKRVA-YAVTKQDDMELIGVTKTKPDFEAYRAKELGIPVYAASEEFLPRF 62
Query: 141 VEEHG-------------VEIGVIAVPAEHAQEIAERLEKAGIKGI 173
E+ G V+I V A P ++ + EKAG+K I
Sbjct: 63 -EKAGFEVEGTLNDLLEKVDIIVDATPGGMGEKNKQLYEKAGVKAI 107
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.317 0.138 0.379
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53618531
Number of Sequences: 444417
Number of extensions: 2197747
Number of successful extensions: 6819
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 6789
Number of HSP's gapped (non-prelim): 45
length of query: 208
length of database: 136,724,657
effective HSP length: 56
effective length of query: 152
effective length of database: 111,837,305
effective search space: 16999270360
effective search space used: 16999270360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 68 (30.9 bits)
