Detailed annotation info for ACL00002118;
Annotation Name | Small nuclear ribonucleoprotein homolog related cluster | |||||||||
Score | 335&emsp![]() | |||||||||
E-value | 4e-31 | |||||||||
% Sequence Identity | 80% (66/82) | |||||||||
Locus | ||||||||||
EC Number | ||||||||||
COG Function | Transcription | |||||||||
KEGG Pathway | ||||||||||
Source | Accession | Description | Score | E-value | % Sequence Identity | Locus | EC Number | Informative Hit | Function/Pathway | GeneOntology |
SSU | No hits found | 0 | ||||||||
LSU | No hits found | 0 | ||||||||
uniref90 | UniRef90_Q8LAK5 | Small nuclear ribonucleoprotein homolog related cluster | 335 | 4e-31 | 80% (66/82) | 1 | GO:0005634|nucleus|IEA; GO:0005732|small nucleolar ribonucleoprotein complex|IEA; GO:0006397|mRNA processing|IEA; GO:0008248|pre-mRNA splicing factor activity|IEA; GO:0019013|viral nucleocapsid|IEA; GO:0030529|ribonucleoprotein complex|IEA | |||
nr | NP_179464 | small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative [Arabidopsis thaliana] pir||A84568 probable small nuclear ribonucleoprotein E [imported] - Arabidopsis thaliana gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana] gb|AAM64436.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana] dbj|BAC43399.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana] gb|AAO64082.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana] | 342 | 2e-31 | 81% (67/82) | 1 | ||||
cog | SPBC11G11.06c | [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog | 221 | 1e-18 | 55% (43/77) | 1 | Transcription | |||
kegg | ath:At2g18740 | MSF3.12; small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative | 342 | 4e-32 | 81% (67/82) | 1 | ||||
smart | 00651 | smart00651, Sm, snRNP Sm proteins; small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing | 165 | 5e-14 | 33% (22/66) | Sm | 1 | |||
pfam | PF01423 | pfam01423, LSM, LSM domain | 168 | 5e-13 | 33% (22/65) | LSM | 1 | |||
est_others | BJ167281 | BJ167281 full length cDNA library, chloronemata and young gametophores Physcomitrella patens subsp. patens cDNA clone pph14k06 3'. | 200 | 4e-18 | 57% (47/82) | 1 |