Detailed annotation info for ACL00000251;
Annotation Name | Probable small nuclear ribonucleoprotein F related cluster | |||||||||
Score | 344&emsp![]() | |||||||||
E-value | 6e-32 | |||||||||
% Sequence Identity | 72% (63/87) | |||||||||
Locus | ||||||||||
EC Number | ||||||||||
COG Function | Transcription | |||||||||
KEGG Pathway | ||||||||||
Source | Accession | Description | Score | E-value | % Sequence Identity | Locus | EC Number | Informative Hit | Function/Pathway | GeneOntology |
SSU | No hits found | 0 | ||||||||
LSU | No hits found | 0 | ||||||||
uniref90 | UniRef90_Q9SUM2 | Probable small nuclear ribonucleoprotein F related cluster | 344 | 6e-32 | 72% (63/87) | 1 | GO:0000398|nuclear mRNA splicing, via spliceosome|IEA; GO:0003723|RNA binding|IEA; GO:0005634|nucleus|IEA; GO:0005732|small nucleolar ribonucleoprotein complex|IEA; GO:0006397|mRNA processing|IEA; GO:0008248|pre-mRNA splicing factor activity|IEA; GO:0030529|ribonucleoprotein complex|IEA | |||
nr | NP_194751 | small nuclear ribonucleoprotein F, putative / snRNP-F, putative / Sm protein F, putative [Arabidopsis thaliana] sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) pir||T14082 hypothetical protein F9N11.70 - Arabidopsis thaliana emb|CAB52466.1| snRNP Sm protein F-like [Arabidopsis thaliana] emb|CAB81015.1| snRNP Sm protein F-like [Arabidopsis thaliana] gb|AAM65157.1| snRNP Sm protein F-like [Arabidopsis thaliana] gb|AAP21190.1| At4g30220 [Arabidopsis thaliana] | 344 | 1e-31 | 72% (63/87) | 1 | ||||
cog | SPBC3E7.14 | [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog | 270 | 6e-24 | 72% (51/70) | 1 | Transcription | |||
kegg | ath:At4g30220 | F9N11.70; small nuclear ribonucleoprotein F, putative / snRNP-F, putative / Sm protein F, putative | 344 | 5e-32 | 72% (63/87) | 1 | ||||
smart | 00651 | smart00651, Sm, snRNP Sm proteins; small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing | 178 | 3e-15 | 41% (28/67) | Sm | 1 | |||
pfam | PF01423 | pfam01423, LSM, LSM domain | 193 | 1e-15 | 43% (28/64) | LSM | 1 | |||
est_others | CN200605 | Tor10273 Gametophyte rehydration Library Tortula ruralis cDNA. | 197 | 3e-17 | 61% (42/68) | 1 |