Coevol
For instructions, see manual
Coevol 1.5 implements a (preliminary) version of the tip-dating coevol framework, implementing the mixed relaxed clock model introduced in Lartillot, Phillips and Ronquist (2016).
History :
May 07, 2014 , version 1.4b:
added the ancov program, implementing the phylogenetic Kalman filter introduced in Lartillot, 2014, Bioinformatics, 30:488; birth-death prior on divergence times now works even in the absence of calibrations; small fixes here and there.
May 11, 2013 , version 1.3c:
options added in coevol for amino-acid data (i.e. for correlating the rate of amino-acid replacement and the ratio of radical over conservative substitution rates with quantitative traits). small fixes in coevol and tracecomp.
March 28, 2013 , version 1.3b:
tracecomp program added to the package. GNU licence added.
January 16, 2013 , version 1.3:
code optimization: codon models are now nearly as fast as nucleotide models;
minor changes in calibration method (allowing for interval calibration on root node).
November 12, 2012 , version 1.2b:
code optimization, leading to a signifcant overall speed-up of the program;
extensive rewriting of the manual, with examples illustrating how to determine MCMC convergence and do correlation analyses
July 2011 , version 1.1f: minor changes
September 2010 , version 1.1c:
first version