Author: elias
Company: laptop

P1       P2      P3     L3        P3        P4     P5

R.americana#50394:    TATAAAAGTTTATTG-GATGTCT-G-ATTATA—-ATA---------TATAAT-AGGA-AAGTCTGGA-CTCA-TTTAAA------ 
R.americana#50283:ATTTTTTAAAAGTTTATTA-GATGTTT-G-CTTATAT-AAT--------ATATAAG-AGGA-AAGTCTGGA-CTCA-TTTATAA----- 
R.americana#50284:    TTTAAAAGTTTATTA-GATGTTT-G-CTTATAT-ATT--------ATATAAG-AGGA-AAGTCTGGA-CTCA-TTAATAAA---- 
R.americana#50633:    TTTAAAAGTTTATTA-GATGTTT-G-CTTATAT-ACT--------ATATAAG-AGGA-AAGTCTGGA-CTCA-TTAATAAA---- 
H.aroides        : TAGAATGAAAAAACACTA-AATGCCT-G-CTTA----AAAACGTAAA----TAAG-AGGA-AAGTCTGGG-CTCT-ACTAATAGTAT-  
S.ecuadoriensis  :    ACTGTATGCTTGTTA-GATGTTC-T-A—------CATAGAC----------T-AGGA-AAGTCCGGA-CTCT-AGCATA------
J.libera         :       TAAAGGATATTG-AGTATCC-G-CTCTATT—TTAG-------AATAGAG-AGGA-AAATCCGGA-CTTC-TATTTGA-----
J.bahamiensis    :      TTTGGTTAATATG-GGTACTC-G-CTTGGTG—TTTT------TATCCAAG-AGGA-AAGTCCGGA-CTCC-TTATTAAAAA--

                    P7   P8    L8    P8   P9   L9  P9  P10    P11

R.americana#50394: AAGTG-CAGGA--TAAAT-TCCTG-CAGAG-AAAA-CTCTAG-GG—-AAA--GT-GTTAAAGAAATATA-
R.americana#50283: GAGTG-CAAGA--TAAAT-TCTTG-CAGAG-AAGA-CTCTAG-GG—-AAA--GT-GTTTTAGAAAAAAT-
R.americana#50284: AAGTG-CAGGA--TAAAT-TCCTG-CAGAG-AAAA-CTCTAG-GG—-AAA--GT-GTTTTAGAAAAAAT-
R.americana#50633: AAGTG-CAGGA--TAAAT-TCCTG-CAGAG-AAAA-CTCTAG-GG—-AAA--GT-GTTTTAGAAAAAAT-
H.aroides        : AGGTG-CTGGG--TAATA-ACCAG-CGAAG-GTGA-CTTCAG-GG—--AA-TGT-AATATAGAAAACAA—
S.ecuadoriensis  : AGGTG-TTGAA--TAACA-TTCAA-CGAAG-TAAA-CTTCAG-GGA--AA--GT-ATTATAGGAAAC---
J.libera         : TTAGA-TTAGT--TAATG-ACTAA-GAAGC-TTAA--GCTTA-GGG-AAA--TT-ACTACAGAAAAACA-
J.bahamiensis    : AGATA-CTGGGT-AAC--ACCCAG-CAGAA-CGAA-TTCTAG-GG—-AAA--GT-ATTGTAGAAAGAC--

                     P12       L12         P12         P13  L13 P13  P14        L14

R.americana#50394: AAAACTCT----TTTTTAATATT---AGAGTTTT-TTGAAA--AGA--TATAA-TCT-AATAATTT------AAAAAA-
R.americana#50283: AAATATTC----TTTCTTTTTAT---GAATATTT-TTGAAAT-GG---TTTAT--CC-TATTATTTAA----ATAA---
R.americana#50284: AAATATTC----TTTGTTTAACATT-GAGTATTT-TTGAAAT-GG---TTTAT--CC-TATTATTTAA----ATAA---
R.americana#50633: AAAGATTC----TTTGTTTAACATT-GAATCTTT-TTGAAAT-GG---TTTAT--CC-TATTATTTAA----ATAA---
H.aroides        : AAGC--------GTAT--------------GCTT-ATGAAAT-GG---TATAC--CC-TAGATAAGCA----CTAA---
S.ecuadoriensis  : ATTTAAATATT-TTCT-------AGTATTTAAAT--TGAAA--TGAT-TTTA-ATCA-GTCAAAAGT-----GTAT---
J.libera         : TGAGTACTA---CTACAT-------TAGTAAACA-TTGAAAA----------------GAGTAGCAG-----GAGA---
J.bahamiensis    : GAATTT------TGTCAT----------AAATTC-ATGAAAA----------------GAATTTCTTTTTA-GTAA---

                        P14           P11/10  P7  P5     P15 L15   P15         P18

R.americana#50394:    AAATTATT----AAAGAA-AC--CC-CACTT-TGAG-CAA-AACC-ATTA----GGTT-GCTAAA-AACAAATAC--
R.americana#50283:  TTAAATATTA-----TAAAA-AC--CC-CACTT-TGAG-CAA-AGTC-ATAT----GGCT-GCTAAA-GACATATAC--
R.americana#50284:  TTAAATAATA-----TAAAA-AC--CC-CACTT-TGAG-CAA-GGTC-ATTT----GACT-GCTGAA-AACATATAC--
R.americana#50633:  TTAAATAATA-----TAAAA-AC--CC-CACTT-TGAG-CAA-GGTC-ATTT----GACT-GCTAAA-AACATATAC--
H.aroides        :  TGCTTATCTA----ATTGAA-AC-ACC-CACCA-AGAG-CAA-GGCC-GTAA---GTGCC-GCTAAT-AAGCTATA—--
S.ecuadoriensis  :   GCTTTTTAC--AACAAGAA-AC-TCC-CACCT-AGAG-CAA-GATC-ATAA----GATC-GCTACA-AGTGA------
J.libera         :  CTGCTCAATC---ATTTGGA-AA-CCC-TCTAA-GAAG-CAA-GA---ATA-------TC-GCTGTA-CTACTATT---
J.bahamiensis    : TGGAAAGATTT-GATTTTGAA-AC--CC-TATCT-GGAG-CAA-GGAT-TTAATAT-ATAC-GCTATA-CATATCTGTT-

                L18    P18             P2       P19         L19       P19                    

R.americana#50394: GTAA-GAGATTGTT-TCAGAGAAAT-AGACATA-CA-TAAAAATTT------TTTT-------AAATTTTTA-GGACAAAA-
R.americana#50283: GTAA-GATATTGTC-GTAGATAAAT-AAACATC-CA-TAAAAA---------ATTA----------TTTTTA-TGACAGAA-
R.americana#50284: GTAA-GATATTGTT-TTAGATAAAT-AAACATC-CA-TAAAAA---------ATAAA---------TTTTTA-TGACAGAA-
R.americana#50633: GTAA-GATATTGTT-TTAGATAAAT-AAACATC-CA-TAAAAA---------GTAAA---------TTTTTA-TGACAGAA-
H.aroides        : GTAAA-TATGGCTT-TAAGATAAAT-AGGCATT-GA-CAATAGTATTTTG--TGTGTT-TTTAATAATATTG-CCACAAAA-
S.ecuadoriensis  : ATTTTTG--TCACT-GCAGATAAAT-GAACATC-CA-AGAAGAAT-------AAGTG-------ATTCTTCT-AGACAAAA-
J.libera         : GTAA-AATAGTTTT-GAAGTGAAAT-GGATACT-CA-GGAAAAAGAATGGC-AGG----GTCTTCTTTTTTT-GGACAAAA-
J.bahamiensis    : GAGA--AATAGATT-TGAGAGAAAT-GAGTATC-CT------------------------------------CGTACAGAA-

                  P4         P1

R.americana#50394: TCCAGCTT-A-TAAATAAACTTTAAA
R.americana#50283: TCCAGCTT-A-TAGATAAACTTTTAAAAAAT
R.americana#50284: TCCAGCTT-A-TAGATAAACTTTTAAA
R.americana#50284: TCCAGCTT-A-TAGATAAACTTTTAAA
H.aroides        : CCCAGCTT-A-TTGTGTTTTTTCATCTA
S.ecuadoriensis  : TCCGGCTT-A-TAAACAAGCTACAGT
J.libera         : TCCGGTTT-A-TAAATATCCTTT
J.bahamiensis    : TCCGGCTT-A-TTGTTAACCA

*Red nucleotides are conserved in more then >80% of bacterial P-RNA sequences