LOCUS M76611 5967 bp DNA circular 15-JAN-2002 DEFINITION Plasmodium falciparum mitochondrion, complete genome. ACCESSION M76611 NID g1311631 VERSION M76611.1 GI:1311631 KEYWORDS . SOURCE malaria parasite P. falciparum. ORGANISM Mitochondrion Plasmodium falciparum Eukaryota; Alveolata; Apicomplexa; Haemosporida; Plasmodium. REFERENCE 1 (bases 1 to 5967) AUTHORS Feagin,J.E., Werner,E., Gardner,M.J., Williamson,D.H. and Wilson,R.J. TITLE Homologies between the contiguous and fragmented rRNAs of the two Plasmodium falciparum extrachromosomal DNAs are limited to core sequences JOURNAL Nucleic Acids Res. 20 (4), 879-887 (1992) MEDLINE 92178987 REFERENCE 2 (bases 1 to 5967) AUTHORS Feagin,J.E. TITLE The 6-kb element of Plasmodium falciparum encodes mitochondrial cytochrome genes JOURNAL Mol. Biochem. Parasitol. 52 (1), 145-148 (1992) MEDLINE 92326863 REFERENCE 3 (bases 1 to 5967) AUTHORS Feagin,J.E., Mericle,B.L., Werner,E. and Morris,M. TITLE Identification of additional rRNA fragments encoded by the Plasmodium falciparum 6 kb element JOURNAL Nucleic Acids Res. 25 (2), 438-446 (1997) MEDLINE 97169433 REFERENCE 4 (bases 1 to 5967) AUTHORS Gillespie,D.E., Salazar,N.A., Rehkopf,D.H. and Feagin,J.E. TITLE The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum have short A tails JOURNAL Nucleic Acids Res. 27 (11), 2416-2422 (1999) MEDLINE 99263048 REFERENCE 5 (bases 1 to 5967) AUTHORS Rehkopf,D.H., Gillespie,D.E., Harrell,M.I. and Feagin,J.E. TITLE Transcriptional mapping and RNA processing of the Plasmodium falciparum mitochondrial mRNAs JOURNAL Mol. Biochem. Parasitol. 105, 93-103 (2000) REFERENCE 6 (bases 1 to 5967) AUTHORS Feagin,J.E. TITLE Direct Submission JOURNAL Submitted (15-NOV-1992) Jean E. Feagin, Seattle Biomedical Research Institute, 4 Nickerson Street, Seattle, WA 98109-1651, USA COMMENT On May 10, 1996 this sequence version replaced gi:343055. FEATURES Location/Qualifiers source 1..5967 /organism="Plasmodium falciparum" /organelle="mitochondrion" /db_xref="taxon:5833" rRNA 100..165 /gene="rns" /note="fragment number 4; synonym=RNA9; corresponds~approximately to E. coli SSU rRNA nt 1215-1317, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="small subunit ribosomal RNA" gene 100..165 /gene="rns" rRNA complement(206..221) /gene="rnl" /note="fragment number 4; synonym=LSUC; corresponds~approximately to E. coli LSU rRNA nt 1087-1102, plus flanking sequence; precise 5' and 3' ends and oligoadenylation status undetermined" /product="large subunit ribosomal RNA" gene complement(206..221) /gene="rnl" rRNA complement(283..389) /gene="rnl" /note="fragment number 11; synonym=LSUG; corresponds~approximately to E. coli LSU rRNA nt 2524-2625, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="large subunit ribosomal RNA" gene complement(283..389) /gene="rnl" rRNA complement(390..502) /gene="rns" /note="fragment number 3; synonym=SSUB; corresponds approximately to E. coli SSU rRNA nt 881-990, plus flanking sequence; no oligoadenylation detected" /product="small subunit ribosomal RNA" gene complement(390..502) /gene="rns" rRNA complement(506..606) /gene="rnl" /note="fragment number 5; synonym=RNA1; corresponds~approximately to E.coli LSU rRNA nt 1254-1276, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="large subunit ribosomal RNA" gene complement(506..606) /gene="rnl" rRNA complement(625..724) /gene="rnl" /note="fragment number 12; synonym=RNA10; corresponds~approximately to E. coli LSU rRNA nt 2646-2674, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="large subunit ribosomal RNA" gene complement(625..724) /gene="rnl" gene complement(725..1487) /gene="cox3" CDS complement(734..>1486) /gene="cox3" /EC_number="1.9.3.1" /note="variable oligoadenylation; precise initiation~codon uncertain" /codon_start=1 /transl_except=(pos:complement(1484..1486),aa:Phe) /transl_table=4 /evidence=not_experimental /product="cytochrome c oxidase subunit 3" /protein_id="AAC63389.2" /db_xref="PID:g18152925" /db_xref="GI:18152925" /translation="FILFSNLSNIKAHLVSYPALTSLYGTSLKYFSVGILFTFNPIIL LIFVYSIRESFYSVFSSLTSGMLSIIISEALLFFTYFWGILHFSLSPYPLSNEGIIIT SSRMLILTITFILASASCMTACLQVFIEKGMSFEISSIICIIYLLGECFASLQTTEYL HLSYHINDTVYTTLFYCVTGLHFSHVVIGLLLLIIYFIRIIEIYDTSTEWFINSFGIS YIVIPHTDQITILYWHFVEIIWLFIEFLFYSE" misc_feature complement(1474..1488) /note="signal mot; copy number 3" rRNA 1501..1630 /gene="rnl" /note="ragment number 10; synonym=LSUF; corresponds~approximately to E. coli LSU rRNA nt 2412-2521, plus flanking sequence; alternate 5' end at nt 1516; transcript contains a 3' oligo(A) structure" /product="large subunit ribosomal RNA" gene 1501..1630 /gene="rnl" rRNA 1650..1688 /gene="rns" /note="fragment number 6; synonym=SSUE; corresponds approximately to E. coli SSU rRNA nt 1384-1422, plus flanking sequence; precise 3' end and oligoadenylation status undetermined" /product="small subunit ribosomal RNA" gene 1650..1688 /gene="rns" rRNA 1697..1763 /gene="rnl" /note="fragment number 2; synonym=RNA2; corresponds~approximately to E. coli LSU rRNA nt 944-990, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="large subunit ribosomal RNA" gene 1697..1763 /gene="rnl" rRNA 1831..1910 /gene="rnl" /note="fragment number 6; synonym=RNA3; corresponds~approximately to E. coli LSU rRNA nt 1648-1678, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="large subunit ribosomal RNA" gene 1831..1910 /gene="rnl" rRNA complement(1916..2023) /gene="rns" /note="fragment number 1; synonym=SSUA; corresponds~approximately to E. coli SSU rRNA nt 502-574, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="small subunit ribosomal RNA" gene complement(1916..2023) /gene="rns" misc_feature 2036..2050 /note="signal mot; copy number 1" gene 2037..3479 /gene="cox1" CDS <2038..3471 /gene="cox1" /EC_number="1.9.3.1" /note="variable oligoadenylation; precise initiation~codon uncertain" /codon_start=1 /transl_except=(pos:2038..2040,aa:Phe) /transl_table=4 /evidence=not_experimental /product="cytochrome c oxidase subunit I" /protein_id="AAC63390.2" /db_xref="PID:g18152926" /db_xref="GI:18152926" /translation="FIVLNRYSLITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTEL YSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPR INSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVS GVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLS DLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISHVISTNYCRNLFGN QSMILAMGCIAVLGSLVWVHHMYTTGLEVDTRAYFTSTTILISIPTGTKVFNWICTYM SSNFGMIHSSSLLSLLFICTFTFGGTTGVILGNAAIDVALHDTYYVIAHFHFVLSIGA IIGLFTTVSAFQDNFFGKNLRENSIVILWSMLFFVGVILTFLPMHFLGFNVMPRRIPD YPDALNGWNMICSIGSTMTLFGLLIFK" misc_feature 3478..3493 /note="signal mot; copy number 2" gene 3480..4624 /gene="cob" CDS 3492..4622 /gene="cob" /EC_number="1.10.2.2" /note="variable oligoadenylation" /codon_start=1 /transl_table=4 /product="apocytochrome b" /protein_id="AAC63391.1" /db_xref="PID:g3721518" /db_xref="GI:3721518" /translation="MNFYSINLVKAHLINYPCPLNINFLWNYGFLLGIIFFIQIITGV FLASRYTPDVSYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRGLNYSYM YLPLSWISGLILFMIFIVTAFVGYVLPWGQMSYWGATVITNLLSSIPVAVIWICGGYT VSDPTIKRFFVLHFILPFIGLCIVFIHIFFLHLHGSTNPLGYDTALKIPFYPNLLSLD VKGFNNVIILFLIQSLFGIIPLSHPDNAIVVNTYVTPSQIVPEWYFLPFYAMLKTVPS KPAGLVIVLLSLQLLFLLAEQRSLTTIIQFKMIFGARDYSVPIIWFMCAFYALLWIGC QLPQDIFILYGRLFIVLFFCSGLFVLVHYRRTHYDYSSQANI" rRNA complement(4594..4618) /gene="rnl" /note="fragment number 3; synonym=LSUB; corresponds~approximately to E. coli LSU rRNA nt 1057-1081, plus flanking sequence; precise 5' and 3' ends and oligoadenylation status undetermined" /product="large subunit ribosomal RNA" gene complement(4594..4618) /gene="rnl" misc_RNA 4625..4696 /note="transcript contains a 3' oligo(A) structure" /product="RNA4" misc_RNA 4717..4802 /note="transcript contains a 3' oligo(A) structure" /product="RNA5" misc_RNA 4803..4865 /note="transcript contains a 3' oligo(A) structure" /product="RNA6" misc_RNA 4887..4945 /note="transcript contains a 3' oligo(A) structure" /product="RNA12" rRNA complement(4996..5025) /gene="rnl" /note="fragment number 9; synonym=RNA13; corresponds~approximately to E. coli LSU rRNA nt 2236-2264, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="large subunit ribosomal RNA" gene complement(4996..5025) /gene="rnl" rRNA complement(5026..5201) /gene="rnl" /note="fragment number 1; synonym=LSUA; corresponds~approximately to E. coli LSU rRNA nt 589-843, plus flanking sequence; transcript contains a 3' oligo(A) structure'" /product="large subunit ribosomal RNA" gene complement(5026..5201) /gene="rnl" misc_RNA complement(5202..5283) /note="transcript contains a 3' oligo(A) structure" /product="RNA7" misc_RNA complement(5284..5378) /note="transcript contains a 3' oligo(A) structure" /product="RNA11" rRNA complement(5379..5446) /gene="rns" /note="fragment number 5; synonym=SSUD; corresponds~approximately to E. coli SSU rRNA nt 1132-1375, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="small subunit ribosomal RNA" gene complement(5379..5446) /gene="rns" rRNA 5447..5507 /gene="rns" /note="fragment number 7; synonym=SSUF; corresponds~approximately to E. coli SSU rRNA nt 1478-1538, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="small subunit ribosomal RNA" gene 5447..5507 /gene="rns" misc_RNA complement(5508..5562) /note="transcript contains a 3' oligo(A) structure; alternate 5' end at nt 5553" /product="RNA14" rRNA complement(5577..5771) /gene="rnl" /note="fragment number 8; synonym=LSUE; corresponds~approximately to E. coli LSU rRNA nt 1895-2081, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="large subunit ribosomal RNA" gene complement(5577..5771) /gene="rnl" rRNA complement(5772..5854) /gene="rnl" /note="fragment number 7; synonym=LSUD; corresponds~approximately to E. coli LSU rRNA nt 1764-1845, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="large subunit ribosomal RNA" gene complement(5772..5854) /gene="rnl" rRNA complement(5855..5955) /gene="rns" /note="fragment number 2; synonym=RNA8; corresponds~approximately to E. coli SSU rRNA nt 783-799, plus flanking sequence; transcript contains a 3' oligo(A) structure" /product="small subunit ribosomal RNA" gene complement(5855..5955) /gene="rns" BASE COUNT 1933 a 936 c 949 g 2149 t ORIGIN 1 aagcttttgg tatctcgtaa tgtagaacaa tattgagttg accgtcaaat ccttttcatt 61 aaaagagtgg attaaatgcc cagccaacac catccaattt gattgggaat tatctgtgtt 121 acaaattttt gatcccaggc tggtaaaaaa tgtaaacttt tagcccataa gaatagaaac 181 agatgccagg ccaataactc aaacagagct atgacgctat caatttttag caagacggat 241 aaatttttca tagaacttaa cgtatcatca tccatgcaaa gataaaacgg tagataggga 301 acaaactgcc tcaagacgtt cttaacccag ctcacgcatc gcttctaacg gtgaactctc 361 attccaatgg aaccttgttc aagttcaaat agattggtaa ggtatagtgt ttactatcaa 421 atgaaacaat gtgttccacc gctagtgttt gcttctaaca ttccacttgc ttataactgt 481 atggacgtaa cctccaggca aagaaaatga ccggtcaaaa cggaatcaat taactatgga 541 tagctgatac tatcaattta tcattactca agtcagcata gtatatatga aggtttctat 601 ggaaacacac ttcccttctc gccatttgat agcggttaac ctttcctttt ccttacgtac 661 tctagctatg aacacaattg tctattcgta caattattca tatatatatt tgaaacagga 721 catacatgtt catttattct gaatagaata agaactctat aaataaccag attatttcaa 781 caaaatgcca atataaaatt gtaatttgat cagtgtgagg tataacaata tatgatatac 841 cgaaagaatt tataaaccat tcggtagaag tatcatatat ttctattatt cttataaagt 901 atattattaa taataataaa cctattacta catgagaaaa atgtaatcct gtaacacaat 961 aaaataatgt agtatataca gtatcattta tatgatatga taaatgtaaa tactctgtag 1021 tttgtagaga tgcaaaacat tctcctaata agtatattat acaaataata ctagagattt 1081 caaaactcat tcctttttct ataaatactt gtaaacatgc agtcatacat gatgcactag 1141 ctaatataaa tgtaattgtt aagattaaca ttcttgatga agtaatgata ataccttcat 1201 tacttaatgg atatggtgat aaactaaaat gtaatatacc ccaaaaatat gtaaagaata 1261 ataaagcttc tgatattatg atagataaca taccagaagt taaagatgaa aatacagaat 1321 aaaaactttc tcgaatagaa tatacaaata ttaataggat tatagggtta aatgtaaata 1381 atatccctac agaaaagtat tttaaagatg taccatataa tgatgttaat gcaggatatg 1441 aaactagatg tgcttttata tttgataaat tactaaataa aataaattta taagaacggt 1501 gagataatgt gccgtaaaca tataacggta agaaggttcg ccggggataa caggttatag 1561 tatatataga gctctaatct ttatatacta ttggcacctc catgtcgtct catcgcagcc 1621 ttgcaataaa taatatctag cgtgtattgt tgccttgtac acaccgctcg tcacgcaata 1681 tcaatatact gggtatagaa ctccaggcgt taacctgtag agttgagatg gaaacagccg 1741 gaaaggtaat tttacgccct taacgtaaag atcatttatg aaatagatta gcatgggact 1801 aaaaaatgtt atgttgttgg tttaagccct attaccatac aagagatcgc gtactttgga 1861 ccgaataaag ctgtgaggaa actacattaa aggaactcga ctggcctaca ctataagaac 1921 gaacgctttt aacgcctgac atggatggat aatactcgac tcttccaaag tataaccgct 1981 gtcgctggga ctgtatggat caaatatttc tcatttatat ccgagcctca tgttattttt 2041 attgttttaa atagatattc acttattaca aattgtaacc ataaaacttt aggattatac 2101 tatttatggt tttcattttt atttggtagt tatggatttt tattatcagt aatactacgt 2161 actgaattat attcttcatc tttaagaata attgcacaag aaaatgtaaa tctatataat 2221 atgatattta caattcacgg aataattatg atttttttca atataatgcc aggattattc 2281 ggaggatttg gtaattactt tctacctatt ttatgtggat ctccagaatt agcatatcct 2341 agaattaata gtatatcttt actgttacaa ccaattgctt ttgttttagt tatattatct 2401 actgcagcag aatttggtgg tggaactgga tggactttat atccaccatt aagtacatct 2461 ttaatgtcat tatctcctgt agctgtagat gtaataattt ttggtttatt agtatctgga 2521 gtcgctagta ttatgtcttc attaaatttt attactacag taatgcattt aagagcaaaa 2581 ggattaacac ttggtatatt aagtgtttct acatggtcat tgatcattac atcaggaatg 2641 ttattgctaa cactaccggt tttaactgga ggagtattaa tgttattatc agacttacat 2701 tttaatactt tattttttga cccaacattt gcaggagatc caatattata tcaacattta 2761 ttctggtttt ttggacatcc tgaagtatac attttaatat tacctgcttt tggagtaatt 2821 agtcatgtaa tttctactaa ttattgcaga aatctatttg gtaatcaatc tatgatactt 2881 gctatgggat gtatagctgt tttaggaagc ttagtatggg tacatcatat gtacactact 2941 ggtttagaag ttgatactag agcttatttt acttcgacta ccattttaat atcaatacct 3001 accggtacaa aagtatttaa ctggatatgt acatatatga gtagtaattt tggtatgata 3061 cacagctctt cattattgtc attattattt atatgtacat ttacatttgg aggtactact 3121 ggagttatat taggtaatgc tgccattgat gtagcattac atgacacata ttatgttatt 3181 gctcatttcc attttgtact atcaattggt gcaattattg gattatttac aactgtaagt 3241 gcatttcaag ataatttctt tggtaaaaac ttacgtgaaa attctattgt aatactatgg 3301 tcaatgttat tttttgtagg tgtaatatta acatttttac ctatgcattt tttaggattt 3361 aatgtaatgc ctagacgtat tcctgattat ccagacgctt taaatggatg gaatatgatt 3421 tgttctattg ggtcaacaat gactttattt ggtttactaa tttttaaata atattactat 3481 ttattgtttt tatgaacttt tactctatta atttagttaa agcacactta ataaattacc 3541 catgtccatt gaacataaac tttttatgga attacggatt ccttttagga ataatatttt 3601 ttattcaaat tataacaggt gtatttttag caagtcgata tacaccagat gtttcatatg 3661 catattatag tatacaacac attttaagag aattatggag tggatggtgt tttagataca 3721 tgcacgcaac aggtgcttct cttgtatttt tattaacata tcttcatatt ttaagaggat 3781 taaattactc atatatgtat ttaccattat catggatatc tggattgatt ttatttatga 3841 tatttattgt aactgctttc gttggttatg tcttaccatg gggtcaaatg agttattggg 3901 gtgcaactgt aattactaac ttgttatcct ctattccagt agcagtaatt tggatatgtg 3961 gaggatatac tgtgagtgat cctacaataa aacgattttt tgtactacat tttatcttac 4021 catttattgg attatgtatt gtatttatac atatattttt cttacattta catggtagca 4081 caaatccttt agggtatgat acagcattaa aaataccctt ttatccaaat ctattaagtc 4141 ttgatgttaa aggatttaat aatgttataa ttttatttct aatacaaagt ttatttggaa 4201 ttataccttt atcacatcct gataatgcta tcgtagtaaa tacatatgtt actccatctc 4261 aaattgtacc tgaatggtac tttctaccat tttatgcaat gttaaaaact gttccaagta 4321 aaccagctgg tttagtaatt gtattattat cattacaatt attattctta ttagcagaac 4381 aaagaagttt aacaactata attcaattta aaatgatttt tggtgctaga gattattctg 4441 ttcctattat atggtttatg tgtgcattct atgctttatt atggattgga tgtcaattac 4501 cacaagatat attcatttta tatggtcgat tatttattgt attatttttc tgtagtggtt 4561 tatttgtact tgttcattat agacgaacac attatgatta cagctcccaa gcaaacatat 4621 aatattacaa gattgtgata agatgacatt tctgagtatt gagcggaaca aatcagaccg 4681 taaggttata attatgtact atgattggaa aatataacta tagttaccat agctgtagat 4741 ggatgcttcg atatatagta tattacagta tcaatcggat ttacatgctc agccgccaaa 4801 aactataacg atattattac cgtacaagcc gttagcaaga catgataggg agttggcaag 4861 ttaaagaagt tctggtttat aatagatacg ttattaatgt taggatgtat gggatatttg 4921 tagtacacct tgattggttt tactatttat acttatcgat aaatgttcgg tattgcatgc 4981 ctggtgtttt taatatagac gctgacttcc tggctaaact tcccaatgat atatcttcca 5041 aatagatttc gcagaaaacc gtctatattc atgtttgatt gacctttaac cactaattac 5101 gaatcttcca agaatatttt aagagtccaa ggttcggtct attattttcc tgttctgtaa 5161 ttagatcaca tgttttatag ttcatggaga catggctata accactattc atagagacaa 5221 ctaatggaat ctctctcgat ttccagatgt tgagttacta agaggattct ctccacactt 5281 caattcgtac ttccactacc agaatatact ctcctgttct aaaattctag gatttttcgc 5341 gttttttcag gagaaatccg tatatcgatg tcttttaatc aatgctattg gattcaacgt 5401 ccaggacttc ctgacgctta ataacgattt ctacttccag cagccatttt tggttcagct 5461 acaagttcac tgtcaactac catgttacga cttcgcaccg actgtttctt ttacctcacg 5521 agtcgatcag gaaggtttca tccttaaatc tcgtaaccat gccaacacat aagaactttt 5581 agggaagtta aggtgctcag ggtcttaccg tcgggccgta tgattccaca tattcatgga 5641 taattctatt tattaggagt ctcacactag cgacaatggg gaagtcgtta caccgttcat 5701 gcaggacgga gattacccga caaggaattt tgctacctta ggaccgttta aaatacagcc 5761 gccgtttatc attgatgccg ggcagatgtc agtaacttga aatattcatc agaattatca 5821 gtgacttgtg ttgtaacctt acagacgctt ccagtaattt aacttcttat aaatggaagc 5881 gccggtttcc cgggtatcca atccagtgct ccattcaagg catagagact cagcctatgt 5941 tcaactttgt agagttatat tataata //