LOCUS AY283007 5949 bp DNA 16-JUN-2003 DEFINITION Plasmodium falciparum isolate SLD6 mitochondrion, complete genome. ACCESSION AY283007 NID g31789823 VERSION AY283007.1 GI:31789823 KEYWORDS . SOURCE malaria parasite P. falciparum. ORGANISM Mitochondrion Plasmodium falciparum Eukaryota; Alveolata; Apicomplexa; Haemosporida; Plasmodium. REFERENCE 1 (bases 1 to 5949) AUTHORS Joy,D.A., Feng,X., Mu,J., Furuya,T., Chotivanich,K., Krettli,A.U., Ho,M., Wang,A., Suh,E., Beerli,P. and Su,X.-Z. TITLE Early origin and recent expansion of Plasmodium falciparum JOURNAL Science 300 (5617), 318-321 (2003) MEDLINE 22576748 REFERENCE 2 (bases 1 to 5949) AUTHORS Joy,D.A., Feng,X., Mu,J., Furuya,T., Chotivanich,K., Krettli,A.U., Ho,M., Wang,A., Suh,E., Beerli,P. and Su,X.-Z. TITLE Direct Submission JOURNAL Submitted (24-APR-2003) LMVR, NIH, NIAID, Bldg. 4, rm 1-32, Bethesda, MD 20892, USA FEATURES Location/Qualifiers source 1..5949 /organism="Plasmodium falciparum" /organelle="mitochondrion" /isolate="SLD6" /db_xref="taxon:5833" gene complement(734..>1486) /gene="cox3" CDS complement(734..>1486) /gene="cox3" /note="start codon not determined" /codon_start=1 /transl_table=4 /product="cytochrome oxidase subunit 3" /protein_id="AAP58217.1" /db_xref="PID:g31789826" /db_xref="GI:31789826" /translation="FILFSNLSNIKAHLVSYPALTSLYGTSLKYFSVGILFTFNPIIL LIFVYSIRESFYSVFSSLTSGMLSIIISEALLFFTYFWGILHFSLSPYPLSNEGIIIT SSRMLILTITFILASASCMTACLQVFIEKGMSFEISSIICIIYLLGECFASLQTTEYL HLSYHINDTVYTTLFYCVTGLHFSHVVIGLLLLIIYFIRIIEIYDTSTEWFINSFGIS YIVIPHTDQITILYWHFVEIVWLFIEFLFYSE" gene 2035..3471 /gene="cox1" CDS 2035..3471 /gene="cox1" /codon_start=1 /transl_table=4 /product="cytochrome oxidase subunit 1" /protein_id="AAP58215.1" /db_xref="PID:g31789824" /db_xref="GI:31789824" /translation="MFIVLNRYSLITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTE LYSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYP RINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLV SGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLL SDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISHVISTNYCRNLFG NQSMILAMGCIAVLGSLVWVHHMYTTGLEVDTRAYFTSTTILISIPTGTKVFNWICTY MSSNFGMIHSSSLLSLLFICTFTFGGTTGVILGNAAIDVALHDTYYVIAHFHFVLSIG AIIGLFTTVSAFQDNFFGKNLRENSIVILWSMLFFVGVILTFLPMHFLGFNVMPRRIP DYPDALNGWNMICSIGSTMTLFGLLIFK" gene 3492..4623 /gene="cytb" CDS 3492..4622 /gene="cytb" /codon_start=1 /transl_table=4 /product="cytochrome b" /protein_id="AAP58216.1" /db_xref="PID:g31789825" /db_xref="GI:31789825" /translation="MNFYSINLVKAHLINYPCPLNINFLWNYGFLLGIIFFIQIITGV FLASRYTPDVSYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRGLNYSYM YLPLSWISGLILFMIFIVTAFVGYVLPWGQMSYWGATVITNLLSSIPVAVIWICGGYT VSDPTIKRFFVLHFILPFIGLCIVFIHIFFLHLHGSTNPLGYDTALKIPFYPNLLSLD VKGFNNVIILFLIQSLFGIIPLSHPDNAIVVNTYVTPSQIVPEWYFLPFYAMLKTVPS KPAGLVIVLLSLQLLFLLAEQRSLTTIIQFKMIFGARDYSVPIIWFMCAFYALLWIGC QLPQDIFILYGRLFIVLFFCSGLFVLVHYRRTHYDYSSQANI" BASE COUNT 1926 a 937 c 946 g 2140 t ORIGIN 1 aagcttttgg tatctcgtaa tgtagaacaa tattgagttg accgtcaaat ccttttcatt 61 aaaagagtgg attaaatgcc cagccaacac catccaattt gattgggaat tatctgtgtt 121 acaaattttt gatcccaggc tggtaaaaaa tgtaaacttt tagcccataa gaatagaaac 181 agatgccagg ccaataactc aaacagagct atgacgctat caatttttag caagacggat 241 aaatttttca tagaacttaa cgtatcatca tccatgcaaa gataaaacgg tagataggga 301 acaaactgcc tcaagacgtt cttaacccag ctcacgcatc gcttctaacg gtgaactctc 361 attccaatgg aaccttgttc aagttcaaat agattggtaa ggtatagtgt ttactatcaa 421 atgaaacaat gtgttccacc gctagtgttt gcttctaaca ttccacttgc ttataactgt 481 atggacgtaa cctccaggca aagaaaatga ccggtcaaaa cggaatcaat taactatgga 541 tagctgatac tatcaattta tcattactca agtcagcata gtatatatga aggtttctat 601 ggaaacacac ttcccttctc gccatttgat agcggttaac ctttcctttt ccttacgtac 661 tctagctatg aacacaattg tctattcgta caattattca tatatatatt tgaaacagga 721 catacatgtt catttattct gaatagaata agaactctat aaataaccag actatttcaa 781 caaaatgcca atataaaatt gtaatttgat cagtgtgagg tataacaata tatgatatac 841 cgaaagaatt tataaaccat tcggtagaag tatcatatat ttctattatt cttataaagt 901 atattattaa taataataaa cctattacta catgagaaaa atgtaatcct gtaacacaat 961 aaaataatgt agtatataca gtatcattta tatgatatga taaatgtaaa tactctgtag 1021 tttgtagaga tgcaaaacat tctcctaata agtatattat acaaataata ctagagattt 1081 caaaactcat tcctttttct ataaatactt gtaaacatgc agtcatacat gatgcactag 1141 ctaatataaa tgtaattgtt aagattaaca ttcttgatga agtaatgata ataccttcat 1201 tacttaatgg atatggtgat aaactaaaat gtaatatacc ccaaaaatat gtaaagaata 1261 ataaagcttc tgatattatg atagataaca taccagaagt taaagatgaa aatacagaat 1321 aaaaactttc tcgaatagaa tatacaaata ttaataggat tatagggtta aatgtaaata 1381 atatccctac agaaaagtat tttaaagatg taccatataa tgatgttaat gcaggatatg 1441 aaactagatg tgcttttata tttgataaat tactaaataa aataaattta taagaacggt 1501 gagataatgt gccgtaaaca tataacggta agaaggttcg ccggggataa caggttatag 1561 tatatataga gctctaatct ttatatacta ttggcacctc catgtcgtct catcgcagcc 1621 ttgcaataaa taatatctag cgtgtattgt tgccttgtac acaccgctcg tcacgcaata 1681 tcaatatact gagtatagaa ctccaggcgt taacctgtag agttgagatg gaaacagccg 1741 gaaaggtaat tttacgccct taacgtaaag atcatttatg aaatagatta gcatgggact 1801 aaaaaatgtt atgttgttgg tttaagccct attaccatac aagagatcgc gtactttgga 1861 ccgaataaag ctgtgaggaa actacattaa aggaactcga ctggcctaca ctataagaac 1921 gaacgctttt aacgcctgac atggatggat aatactcgac tcttccaaag tataaccgct 1981 gtcgctggga ctgtatggat caaatatttc tcatttatat ccgagcctca tgttattttt 2041 attgttttaa atagatattc acttattaca aattgtaacc ataaaacttt aggattatac 2101 tatttatggt tttcattttt atttggtagt tatggatttt tattatcagt aatactacgt 2161 actgaattat attcttcatc tttaagaata attgcacaag aaaatgtaaa tctatataat 2221 atgatattta caattcacgg aataattatg atttttttca atataatgcc aggattattc 2281 ggaggatttg gtaattactt tctacctatt ttatgtggat ctccagaatt agcatatcct 2341 agaattaata gtatatcttt actgttacaa ccaattgctt ttgttttagt tatattatct 2401 actgcagcag aatttggtgg tggaactgga tggactttat atccaccatt aagtacatct 2461 ttaatgtcat tatctcctgt agctgtagat gtaataattt ttggtttatt agtatctgga 2521 gtcgctagta ttatgtcttc attaaatttt attactacag taatgcattt aagagcaaaa 2581 ggattaacac ttggtatatt aagtgtttct acatggtcat tgatcattac atcaggaatg 2641 ttattgctaa cactaccggt tttaactgga ggagtattaa tgttattatc agacttacat 2701 tttaatactt tattttttga cccaacattt gcaggagatc caatattata tcaacattta 2761 ttctggtttt ttggacatcc tgaagtatac attttaatat tacctgcttt tggagtaatt 2821 agtcatgtaa tttctactaa ttattgcaga aatctatttg gtaatcaatc tatgatactt 2881 gctatgggat gtatagctgt tttaggaagc ttagtatggg tacatcatat gtacactact 2941 ggtttagaag ttgatactag agcttatttt acttcgacta ccattttaat atcaatacct 3001 accggtacaa aagtatttaa ctggatatgt acatatatga gtagtaattt tggtatgata 3061 cacagctctt cattattgtc attattattt atatgtacat ttacatttgg aggtactact 3121 ggagttatat taggtaatgc tgccattgat gtagcattac atgacacata ttatgttatt 3181 gctcatttcc attttgtact atcaattggt gcaattattg gattatttac aactgtaagt 3241 gcatttcaag ataatttctt tggtaaaaac ttacgtgaaa attctattgt aatactatgg 3301 tcaatgttat tttttgtagg tgtaatatta acatttttac ctatgcattt tttaggattt 3361 aatgtaatgc ctagacgtat tcctgattat ccagacgctt taaatggatg gaatatgatt 3421 tgttctattg ggtcaacaat gactttattt ggtttactaa tttttaaata atattactat 3481 ttattgtttt tatgaacttt tactctatta atttagttaa agcacactta ataaattacc 3541 catgtccatt gaacataaac tttttatgga attacggatt ccttttagga ataatatttt 3601 ttattcaaat tataacaggt gtatttttag caagtcgata tacaccagat gtttcatatg 3661 catattatag tatacaacac attttaagag aattatggag tggatggtgt tttagataca 3721 tgcacgcaac aggtgcttct cttgtatttt tattaacata tcttcatatt ttaagaggat 3781 taaattactc atatatgtat ttaccattat catggatatc tggattgatt ttatttatga 3841 tatttattgt aactgctttc gttggttatg tcttaccatg gggtcaaatg agttattggg 3901 gtgcaactgt aattactaac ttgttatcct ctattccagt agcagtaatt tggatatgtg 3961 gaggatatac tgtgagtgat cctacaataa aacgattttt tgtactacat tttatcttac 4021 catttattgg attatgtatt gtatttatac atatattttt cttacattta catggtagca 4081 caaatccttt agggtatgat acagcattaa aaataccctt ttatccaaat ctattaagtc 4141 ttgatgttaa aggatttaat aatgttataa ttttatttct aatacaaagt ttatttggaa 4201 ttataccttt atcacatcct gataatgcta tcgtagtaaa tacatatgtt actccatctc 4261 aaattgtacc tgaatggtac tttctaccat tttatgcaat gttaaaaact gttccaagta 4321 aaccagctgg tttagtaatt gtattattat cattacaatt attattctta ttagcagaac 4381 aaagaagttt aacaactata attcaattta aaatgatttt tggtgctaga gattattctg 4441 ttcctattat atggtttatg tgtgcattct atgctttatt atggattgga tgtcaattac 4501 cacaagatat attcatttta tatggtcgat tatttattgt attatttttc tgtagtggtt 4561 tatttgtact tgttcattat agacgaacac attatgatta cagctcccaa gcaaacatat 4621 aatattacaa gattgtgata agatgacatt tctgagtatt gagcggaaca aatcagaccg 4681 taaggttata attatgtact atgattggaa aatataacta tagttaccat agctgtagat 4741 ggatgcttcg atatatagta tattacagta tcaatcggat ttacatgctc agccgccaaa 4801 aactataacg atattattac cgtacaagcc gttagcaaga catgataggg agttggcaag 4861 ttaaagaagt tctggtttat aatagatacg ttattaatgt taggatgtat gggatatttg 4921 tagtacacct tgattggttt tactatttat acttatcgat aaatgttcgg tattgcatgc 4981 ctggtgtttt taatatagac gctgacttcc tggctaaact tcccaatgat atatcttcca 5041 aatagatttc gcagaaaacc gtctatattc atgtttgatt gacctttaac cactaattac 5101 gaatcttcca agaatatttt aagagtccaa ggttcggtct attattttcc tgttctgtaa 5161 ttagatcaca tgttttatag ttcatggaga catggctata accactattc atagagacaa 5221 ctaatggaat ctctctcgat ttccagatgt tgagttacta agaggattct ctccacactt 5281 caattcgtac ttccactacc agaatatact ctcctgttct aaaattctag gatttttcgc 5341 gttttttcag gagaaatccg tatatcgatg tcttttaatc aatgctattg gattcaacgt 5401 ccaggacttc ctgacgctta ataacgattt ctacttccag cagccatttt tggttcagct 5461 acaagttcac tgtcaactac catgttacga cttcgcaccg actgtttctt ttacctcacg 5521 agtcgatcag gaaggtttca tccttaaatc tcgtaaccat gccaacacat aagaactttt 5581 agggaagtta aggtgctcag ggtcttaccg tcgggccgta tgattccaca tattcatgga 5641 taattctatt tattaggagt ctcacactag cgacaatggg gaagtcgtta caccgttcat 5701 gcaggacgga gattacccga caaggaattt tgctacctta ggaccgttta aaatacagcc 5761 gccgtttatc attgatgccg ggcagatgtc agtaacttga aatattcatc agaattatca 5821 gtgacttgtg ttgtaacctt acagacgctt ccagtaattt aacttcttat aaatggaagc 5881 gccggtttcc cgggtatcca atccagtgct ccattcaagg catagagact cagcctatgt 5941 tcaactttg //