LOCUS       AF055587                5990 bp    DNA     linear   INV 16-JAN-1999
DEFINITION  Plasmodium vivax cytochrome c oxidase subunit III (coxIII),
            cytochrome c oxidase subunit I (coxI), and apocytochrome b (cytb)
            genes, mitochondrial genes encoding mitochondrial proteins,
            complete cds.
ACCESSION   AF055587
VERSION     AF055587.1  GI:3088633
KEYWORDS    .
SOURCE      mitochondrion Plasmodium vivax (malaria parasite P. vivax)
  ORGANISM  Plasmodium vivax
            Eukaryota; Alveolata; Apicomplexa; Haemosporida; Plasmodium.
REFERENCE   1  (bases 1 to 5990)
  AUTHORS   Vaidya,A.B., Akella,R. and Suplick,K.
  TITLE     Sequences similar to genes for two mitochondrial proteins and
            portions of ribosomal RNA in tandemly arrayed 6-kilobase-pair DNA
            of a malarial parasite
  JOURNAL   Mol. Biochem. Parasitol. 35 (2), 97-107 (1989)
  MEDLINE   89364999
   PUBMED   2549417
  REMARK    Corrigendum. Mol. Biochem. Parasitol. 39,295-296 (1990)
REFERENCE   2  (bases 1 to 5990)
  AUTHORS   Suplick,K., Morrisey,J. and Vaidya,A.B.
  TITLE     Complex transcription from the extrachromosomal DNA encoding
            mitochondrial functions of Plasmodium yoelii
  JOURNAL   Mol. Cell. Biol. 10 (12), 6381-6388 (1990)
  MEDLINE   91061745
   PUBMED   1701017
REFERENCE   3  (bases 1 to 5990)
  AUTHORS   Vaidya,A.B., Lashgari,M.S., Pologe,L.G. and Morrisey,J.
  TITLE     Structural features of Plasmodium cytochrome b that may underlie
            susceptibility to 8-aminoquinolines and hydroxynaphthoquinones
  JOURNAL   Mol. Biochem. Parasitol. 58 (1), 33-42 (1993)
  MEDLINE   93211452
   PUBMED   8459834
REFERENCE   4  (bases 1 to 5990)
  AUTHORS   McIntosh,M.T., Srivastava,R. and Vaidya,A.B.
  TITLE     Divergent evolutionary constraints on mitochondrial and nuclear
            genomes of malaria parasites
  JOURNAL   Mol. Biochem. Parasitol. 95 (1), 69-80 (1998)
  MEDLINE   98434254
   PUBMED   9763290
REFERENCE   5  (bases 1 to 5990)
  AUTHORS   McIntosh,M.T., Morissey,J. and Vaidya,A.B.
  TITLE     Trans-association of ribosomal RNA encoded by scrambled genes in
            the mitochondrial DNA of Plasmodium yoelii
  JOURNAL   Unpublished
REFERENCE   6  (bases 1 to 5990)
  AUTHORS   McIntosh,M.T., Srivastava,R. and Vaidya,A.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-1998) Microbiology & Immunology, Allegheny
            University of the Health Sciences, 2900 Queen Lane, Philadelphia,
            PA 19129, USA
FEATURES             Location/Qualifiers
     source          1..5990
                     /organism="Plasmodium vivax"
                     /organelle="mitochondrion"
                     /mol_type="genomic DNA"
                     /strain="Salvador I"
                     /db_xref="taxon:5855"
     misc_feature    complement(321..499)
                     /note="similar to prokaryotic large subunit ribosomal RNA;
                     LS1"
     misc_feature    complement(691..745)
                     /note="similar to prokaryotic small subunit ribosomal RNA;
                     SS4"
     misc_feature    complement(749..828)
                     /note="similar to prokaryotic small subunit ribosomal RNA;
                     SS6"
     misc_feature    complement(885..1073)
                     /note="similar to prokaryotic large subunit ribosomal RNA;
                     LS7"
     misc_feature    complement(1077..1155)
                     /note="similar to prokaryotic large subunit ribosomal RNA;
                     LS6"
     misc_feature    complement(1292..1363)
                     /note="similar to prokaryotic small subunit ribosomal RNA;
                     SS3"
     misc_feature    complement(1387..1490)
                     /note="similar to prokaryotic large subunit ribosomal RNA;
                     LS3"
     misc_feature    complement(1553..1649)
                     /note="similar to prokaryotic large subunit ribosomal RNA;
                     LS9"
     misc_feature    complement(1653..1771)
                     /note="similar to prokaryotic small subunit ribosomal RNA;
                     SS2"
     misc_feature    complement(1817..1851)
                     /note="similar to prokaryotic large subunit ribosomal RNA;
                     LS4"
     misc_feature    complement(1858..1881)
                     /note="similar to prokaryotic large subunit ribosomal RNA;
                     LS5"
     gene            complement(1998..>2747)
                     /gene="coxIII"
     CDS             complement(1998..>2747)
                     /gene="coxIII"
                     /function="component of mitochondrial electron transport
                     chain"
                     /note="putative cds with undefined initiation codon; 5'
                     and 3' ends based on homology to Plasmodium yoelii coxIII
                     and Plasmodium yoelii mRNA mapping studies"
                     /codon_start=1
                     /transl_table=4
                     /product="cytochrome c oxidase subunit III"
                     /protein_id="AAD05207.1"
                     /db_xref="GI:3088636"
                     /translation="FIFSNYNNIKAHLVSYPSLTSLYGTSLKYFSVGILFTFNPIIFI
                     IFVYSIRESFYSIFSSLVSGMLSIIISEAILFITYFWGILHFSLSPYPLYNEGIILTS
                     SRMLILTITFILASASCMTACLQFLIEKGMSLEISSIVFIIYLLGECFASLQTTEYLH
                     LGYCINDAISGTLFYCVTGLHFSHVIVGLLLLLIYFIRIVEMYDTNSEWSYSLYGISY
                     IVLPHTDQITILYWHFVEIVWLFIEFFFYSE"
     misc_feature    2782..2891
                     /note="similar to prokaryotic large subunit ribosomal RNA;
                     LS8"
     misc_feature    2922..2949
                     /note="similar to prokaryotic small subunit ribosomal RNA;
                     SS5"
     misc_feature    complement(3192..3301)
                     /note="similar to prokaryotic small subunit ribosomal RNA;
                     SS1"
     gene            <3328..4761
                     /gene="coxI"
     CDS             <3328..4761
                     /gene="coxI"
                     /function="component of mitochondrial electron transport
                     chain"
                     /note="putative cds with undefined initiation codon; 5'
                     and 3' ends based on homology to Plasmodium yoelii coxI
                     and Plasmodium yoelii mRNA mapping studies"
                     /codon_start=1
                     /transl_table=4
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="AAD05205.1"
                     /db_xref="GI:3088634"
                     /translation="FFVFNRYTLITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTEL
                     YSSSLRIIAQENVNLYNMIFTLHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPR
                     INSISLLLQPIAFILVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIVGLLVS
                     GIASIMSSLNFITTVMHLRSKGLTLGILSVSTWSLIITSVMLLLTLPVLTGGVLMLLS
                     DLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISHVISTNYCRSLFGN
                     QSMILAMSCIAILGSVVWAHHMYTTGLEVDTRAFFTSTTILISIPTGTKIFNWICTYM
                     GSNFGITHSSSLLSLLFICTFTFGGTTGVILGNAAIDIALHDTYYVIAHFHFVLSIGA
                     IIGLFTLVSSFQENFFGKHLRENSIIILWSILFFIGVVLTFLPMHFLGFNVMPRRIPD
                     YPDALNGWNMICSIGSTMTLFGLFIFK"
     gene            4783..5931
                     /gene="cytb"
     CDS             4783..5931
                     /gene="cytb"
                     /function="component of mitochondrial electron transport
                     chain"
                     /note="putative cds based on homology to Plasmodium yoelii
                     cytb"
                     /codon_start=1
                     /transl_table=4
                     /product="apocytochrome b"
                     /protein_id="AAD05206.1"
                     /db_xref="GI:3088635"
                     /translation="MNYYSINLAKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGV
                     FLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRGLNYSYL
                     YLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVLVIWLCGGYT
                     VSDPTIKRFFVLH