Score E
Sequences producing significant alignments: (bits) Value
gb|AAD35263.1|AE001702_3 (AE001702) hypothetical protein [T... 150 9e-37
gi|2649562 (AE001032) purine NTPase, putative [Archaeoglobu... 29 3.5
gi|4056676 (AF106933) plexin B [Drosophila melanogaster] 29 4.6
gb|AAD30582.1|AC007260_13 (AC007260) lcl|prt_seq No definit... 29 6.0
pir||A46361 P element homolog (Lu-P1 element) - greenbottle... 29 6.0
sp|Q08402|GP44_BPSP1 E3 PROTEIN (GENE 44 PROTEIN) >gi|10726... 29 6.0
gb|AAD52843.1|AF134173_1 (AF134173) myosin essential light ... 28 7.9
gb|AAD45325.1|AF158102_1 (AF158102) retinoid-x-receptor [Sc... 28 7.9
gb|AAD33428.1|AF129816_1 (AF129816) retinoid X receptor RXR... 28 7.9
pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain >gi|51... 28 7.9
sp|Q58800|YE05_METJA HYPOTHETICAL PROTEIN MJ1405 >gi|212884... 28 7.9
sp|P07291|MLE_AEQIR MYOSIN ESSENTIAL LIGHT CHAIN, STRIATED ... 28 7.9
gb|AAD35263.1|AE001702_3 (AE001702) hypothetical protein [Thermotoga maritima]
Length = 73
Score = 150 bits (376), Expect = 9e-37
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MEYDVYVRVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIITPFPEEAIKLLEGCKEMVD 60
MEYDVYVRVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIITPFPEEAIKLLEGCKEMVD
Sbjct: 1 MEYDVYVRVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIITPFPEEAIKLLEGCKEMVD 60
Query: 61 LEILEVKENPGEA 73
LEILEVKENPGEA
Sbjct: 61 LEILEVKENPGEA 73
gi|2649562 (AE001032) purine NTPase, putative [Archaeoglobus fulgidus]
Length = 886
Score = 29.3 bits (64), Expect = 3.5
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 8 RVSKEDVHLLNYLLEVEEH---MFNIRKYEDGVLKIITPFPEEAIKLLEGCKEMVD-LEI 63
++S+E +L + L E+EEH + ++RK E VL+ + E+ +L + KE+V+ +E
Sbjct: 212 KLSEEVRNLESRLKELEEHKSRLESLRKQESSVLQEVRGLEEKLRELEKQLKEVVERIED 271
Query: 64 LEVK 67
LE K
Sbjct: 272 LEKK 275
gi|4056676 (AF106933) plexin B [Drosophila melanogaster]
Length = 2051
Score = 29.0 bits (63), Expect = 4.6
Identities = 17/75 (22%), Positives = 40/75 (52%), Gaps = 9/75 (12%)
Query: 1 MEYDVYVRVSKEDVHL-LNYLLEVEEHMFNIRKYEDGVLKIIT--------PFPEEAIKL 51
M+ +V+V + ++L L+++++ + + N+ KY + I PFP + +KL
Sbjct: 1225 MDVTTFVKVHETQLNLQLSFVMDNVQLVRNLNKYFHDIRSTIVYLADPKYLPFPNDGVKL 1284
Query: 52 LEGCKEMVDLEILEV 66
+G +++ E+L +
Sbjct: 1285 YKGDTLVIEGELLNL 1299
gb|AAD30582.1|AC007260_13 (AC007260) lcl|prt_seq No definition line found [Arabidopsis
thaliana]
Length = 679
Score = 28.6 bits (62), Expect = 6.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 5 VYVRVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIITPFPEEAIKLLEGCKEMVDLEIL 64
+ + + + VH N + E+EEH I K + +T E ++ + GC E + E
Sbjct: 530 ILISRNNQHVHWDNVVYEIEEHFMRISKCSS---RSLTHQDFELLRRISGCYEYITQENF 586
Query: 65 E 65
E
Sbjct: 587 E 587
pir||A46361 P element homolog (Lu-P1 element) - greenbottle fly (Lucilia
cuprina)
Length = 767
Score = 28.6 bits (62), Expect = 6.0
Identities = 18/43 (41%), Positives = 27/43 (61%), Gaps = 5/43 (11%)
Query: 17 LNYLLEVEEHMFNIRKYEDGVLKIITPFPEEAIKLLEGCKEMV 59
LN+ L+++ H N+ + GV KI T E I+ LEGCK++V
Sbjct: 127 LNFRLKMQVHNSNMALH--GVNKIFT---EGQIRKLEGCKKIV 164
sp|Q08402|GP44_BPSP1 E3 PROTEIN (GENE 44 PROTEIN) >gi|1072649|pir||B49908 E22 protein
- phage SPO1 >gi|310585 (L20825) e3 protein
[Bacteriophage SPO1] >gi|2766471 (AF031901) E3
[Bacteriophage SPO1]
Length = 237
Score = 28.6 bits (62), Expect = 6.0
Identities = 22/65 (33%), Positives = 34/65 (51%), Gaps = 4/65 (6%)
Query: 8 RVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIITPFPEEAIKLLEGCKEMVDLEILEVK 67
RVSK+DV Y + VEE ++ E+ V +++T E +LEG + + D E E
Sbjct: 30 RVSKKDVEEGKYDVVVEEAAVSLADTEEVVEEVVT----EEEDILEGVEVVEDEEEEEAA 85
Query: 68 ENPGE 72
E+ E
Sbjct: 86 EDVEE 90
gb|AAD52843.1|AF134173_1 (AF134173) myosin essential light chain [Pecten maximus]
Length = 157
Score = 28.2 bits (61), Expect = 7.9
Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 8 RVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIIT-PFPEE 47
R+S EDV + L +++E + KYED V K++ P+P++
Sbjct: 117 RLSDEDVDEIIRLTDLQEDLEGNVKYEDFVKKVMAGPYPDK 157
gb|AAD45325.1|AF158102_1 (AF158102) retinoid-x-receptor [Schistosoma mansoni]
Length = 784
Score = 28.2 bits (61), Expect = 7.9
Identities = 15/58 (25%), Positives = 29/58 (49%)
Query: 4 DVYVRVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIITPFPEEAIKLLEGCKEMVDL 61
D +R +V+ L Y L ++ M N+ E G LK+I +++ L + +++L
Sbjct: 625 DDMIRKRNTNVYKLIYNLAIKLRMLNLDPVELGCLKLILLLNPDSMTCLNNIRSLIEL 682
gb|AAD33428.1|AF129816_1 (AF129816) retinoid X receptor RXR-2 [Schistosoma mansoni]
Length = 784
Score = 28.2 bits (61), Expect = 7.9
Identities = 15/58 (25%), Positives = 29/58 (49%)
Query: 4 DVYVRVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIITPFPEEAIKLLEGCKEMVDL 61
D +R +V+ L Y L ++ M N+ E G LK+I +++ L + +++L
Sbjct: 625 DDMIRKRNTNVYKLIYNLAIKLRMLNLDPVELGCLKLILLLNPDSMTCLNNIRSLIEL 682
pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain >gi|5107468|pdb|1B7T|Z
Chain Z, Myosin Digested By Papain
Length = 156
Score = 28.2 bits (61), Expect = 7.9
Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 8 RVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIIT-PFPEE 47
R+S EDV + L +++E + KYED V K++ P+P++
Sbjct: 116 RLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYPDK 156
sp|Q58800|YE05_METJA HYPOTHETICAL PROTEIN MJ1405 >gi|2128841|pir||D64475 hypothetical
protein MJ1405 - Methanococcus jannaschii >gi|1592054
(U67581) M. jannaschii predicted coding region MJ1405
[Methanococcus jannaschii]
Length = 75
Score = 28.2 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 29/55 (51%), Gaps = 7/55 (12%)
Query: 2 EYDVYVRVS----KEDVHLLNYLLEVEEHMFNIRKYEDGVLKIITPFPEEAIKLL 52
E +Y R+ +E + L + L ++ ++N YEDG ++I+ FP E K L
Sbjct: 10 EIIIYGRIQHVGFRERIENLGHALGIDGIVYN---YEDGTVRILANFPSERKKKL 61
sp|P07291|MLE_AEQIR MYOSIN ESSENTIAL LIGHT CHAIN, STRIATED ADDUCTOR MUSCLE (E-LC)
(SULFHYDRYL LIGHT CHAIN) (SHLC) >gi|84578|pir||A25183
myosin essential light chain, striated muscle - scallop
(Aequipecten irradians) >gi|155649 (M17201) essential
myosin light chain [Aequipecten irradians]
Length = 157
Score = 28.2 bits (61), Expect = 7.9
Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 8 RVSKEDVHLLNYLLEVEEHMFNIRKYEDGVLKIIT-PFPEE 47
R+S EDV + L +++E + KYED V K++ P+P++
Sbjct: 117 RLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYPDK 157
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.317 0.141 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19968973
Number of Sequences: 444417
Number of extensions: 683214
Number of successful extensions: 1771
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1768
Number of HSP's gapped (non-prelim): 12
length of query: 73
length of database: 136,724,657
effective HSP length: 52
effective length of query: 21
effective length of database: 113,614,973
effective search space: 2385914433
effective search space used: 2385914433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 61 (28.2 bits)
