BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.Query= a q (736 letters) Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR 444,417 sequences; 136,724,657 total letters
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Score E Sequences producing significant alignments: (bits) Value gb|AAD35271.1|AE001702_11 (AE001702) primosomal protein N' ... 1454 0.0 sp|P94461|PRIA_BACSU PRIMOSOMAL PROTEIN N' (REPLICATION FAC... 301 1e-80 emb|CAA71348| (Y10304) priA [Bacillus subtilis] 288 1e-76 gb|AAD19062| (AE001672) Primosomal Protein N' [Chlamydia pn... 283 4e-75 sp|P44647|PRIA_HAEIN PRIMOSOMAL PROTEIN N' (REPLICATION FAC... 281 2e-74 gb|AAC68373.1| (AE001350) Primosomal Protein N' [Chlamydia ... 280 2e-74 sp|P74397|PRIA_SYNY3 PRIMOSOMAL PROTEIN N' (REPLICATION FAC... 276 4e-73 sp|Q45032|PRIA_BORBU PRIMOSOMAL PROTEIN N' (REPLICATION FAC... 268 9e-71 emb|CAA66080.1| (X97449) primosomal protein N [Borrelia bur... 268 1e-70 sp|P17888|PRIA_ECOLI PRIMOSOMAL PROTEIN N' (REPLICATION FAC... 260 2e-68 pir||A35505 primosomal replication factor Y - Escherichia c... 260 3e-68 dbj|BAA00491| (D00616) PriA [Escherichia coli] 259 7e-68 sp|O83258|PRIA_TREPA PRIMOSOMAL PROTEIN N' (REPLICATION FAC... 258 1e-67 emb|CAA14989| (AJ235272) POSSIBLE PRIMOSOMAL PROTEIN N (pri... 241 1e-62 sp|P05445|PRIA_RHORU PRIMOSOMAL PROTEIN N' (REPLICATION FAC... 228 1e-58 gi|1905953 (U52368) rubredoxin oxidoreductase homolog [Clos... 224 2e-57 sp|O25149|PRIA_HELPY PRIMOSOMAL PROTEIN N' (REPLICATION FAC... 212 1e-53 gi|4155576 (AE001528) PRIMOSOMAL PROTEIN N' (REPLICATION FA... 205 1e-51 gb|AAF04765.1| (AF104227) putative primosomal replication f... 123 6e-27 emb|CAA06805| (AJ006018) putative primosomal replication fa... 111 3e-23 gi|2984070 (AE000755) putative protein [Aquifex aeolicus] 86 8e-16 emb|CAA26336| (X02499) URF2a [Rhodospirillum rubrum] 85 2e-15 gi|2984128 (AE000759) repair excision nuclease subunit B [A... 68 2e-10 sp|Q55170|UVRB_SYNY3 EXCINUCLEASE ABC SUBUNIT B >gi|1001167... 61 3e-08 sp|P71670|PRIA_MYCTU PUTATIVE PRIMOSOMAL PROTEIN N' (REPLIC... 61 4e-08 gi|2688782 (AE001182) excinuclease ABC, subunit B (uvrB) [B... 59 1e-07 sp|P72174|UVRB_PSEAE EXCINUCLEASE ABC SUBUNIT B >gi|1592818... 59 1e-07 gb|AAD36825.1|AE001814_7 (AE001814) excinuclease ABC, subun... 59 2e-07 sp|O26542|UVRB_METTH EXCINUCLEASE ABC SUBUNIT B >gi|2621508... 59 2e-07 emb|CAA27314| (X03678) uvrB [Escherichia coli] 57 5e-07 gb|AAF11823.1|AE002060_2 (AE002060) excinuclease ABC, subun... 56 9e-07 gi|4097425 (U59874) UvrB exinuclease subunit B [Mycoplasma ... 56 9e-07 dbj|BAA35437| (D90716) UvrB protein. [Escherichia coli] 55 2e-06 sp|P45125|UVRB_HAEIN EXCINUCLEASE ABC SUBUNIT B >gi|1074062... 55 2e-06 sp|P07025|UVRB_ECOLI EXCINUCLEASE ABC SUBUNIT B >gi|73010|p... 55 2e-06 sp|P47319|UVRB_MYCGE EXCINUCLEASE ABC SUBUNIT B >gi|1361506... 54 3e-06 sp|P94846|UVRB_HELPY EXCINUCLEASE ABC SUBUNIT B >gi|2314265... 54 5e-06 gb|AAD46146.2|AF102847_1 (AF102847) excinuclease ABC subuni... 53 6e-06 pir||S03812 uvrB protein - Micrococcus luteus 53 6e-06 sp|P10125|UVRB_MICLU EXCINUCLEASE ABC SUBUNIT B >gi|44455|e... 53 6e-06 sp|Q9ZDW2|UVRB_RICPR EXCINUCLEASE ABC SUBUNIT B >gi|3860767... 53 8e-06 sp|O33395|UVRB_NEIME EXCINUCLEASE ABC SUBUNIT B >gi|2909345... 53 8e-06 gi|4155631 (AE001532) EXCINUCLEASE ABC SUBUNIT B [Helicobac... 53 1e-05 sp|Q50939|UVRB_NEIGO EXCINUCLEASE ABC SUBUNIT B >gi|1084061... 53 1e-05 gi|1737482 (U80807) UvrB [Helicobacter pylori] 52 2e-05 sp|Q54986|UVRB_STRPN EXCINUCLEASE ABC SUBUNIT B >gi|98054|p... 51 3e-05 gi|3043868 (U95835) extracellular protein Exp5 precursor [L... 51 4e-05 gi|4156075 (AE001567) TRANSCRIPTION-REPAIR COUPLING FACTOR ... 50 5e-05 sp|O06150|UVRB_MYCTU EXCINUCLEASE ABC SUBUNIT B >gi|2113917... 50 7e-05 sp|Q56998|UVRB_ZYMMO EXCINUCLEASE ABC SUBUNIT B >gi|498140 ... 50 7e-05 sp|P37954|UVRB_BACSU EXCINUCLEASE ABC SUBUNIT B (DINA PROTE... 50 9e-05 sp|Q55750|MFD_SYNY3 TRANSCRIPTION-REPAIR COUPLING FACTOR (T... 50 9e-05 gb|AAD18939| (AE001661) Exinuclease ABC Subunit B [Chlamydi... 48 2e-04 sp|Q08705|CTCF_CHICK TRANSCRIPTIONAL REPRESSOR CTCF >gi|107... 48 2e-04 gb|AAD27869.2|AF133731_1 (AF133731) 11-zinc finger protein ... 48 3e-04 ref|NP_031820.1|| CCCTC-binding factor >gi|1256410 (U51037)... 48 3e-04 ref|NP_006556.1|| transcriptional repressor >gi|1706179|sp|... 48 3e-04 sp|O05955|MFD_RICPR TRANSCRIPTION-REPAIR COUPLING FACTOR (T... 47 4e-04 sp|O26066|MFD_HELPY TRANSCRIPTION-REPAIR COUPLING FACTOR (T... 47 4e-04 emb|CAA72474| (Y11783) transcription repair coupling factor... 47 4e-04 sp|Q56243|UVRB_THETH EXCINUCLEASE ABC SUBUNIT B >gi|1325924... 47 4e-04 sp|O83154|UVRB_TREPA EXCINUCLEASE ABC SUBUNIT B >gi|3322379... 46 8e-04 gb|AAF14851.1|AC011664_33 (AC011664) putative helicase [Ara... 46 0.001 sp|O84590|UVRB_CHLTR EXCINUCLEASE ABC SUBUNIT B >gi|3329029... 46 0.001 sp|Q54900|RECG_STRPN ATP-DEPENDENT DNA HELICASE RECG >gi|21... 45 0.002 gb|AAD35297.1|AE001705_8 (AE001705) ATP-dependent DNA helic... 45 0.002 sp|P30958|MFD_ECOLI TRANSCRIPTION-REPAIR COUPLING FACTOR (T... 45 0.003 sp|P45128|MFD_HAEIN TRANSCRIPTION-REPAIR COUPLING FACTOR (T... 45 0.003 gi|403956 (U01698) Homology to GenBank Accession Number M80... 45 0.003 pir||A46215 transcription-repair coupling protein Mfd - Esc... 45 0.003 gb|AAD36518.1|AE001796_10 (AE001796) transcription-repair c... 44 0.005 sp|P75558|UVRB_MYCPN EXCINUCLEASE ABC SUBUNIT B >gi|2146124... 43 0.007 sp|P37474|MFD_BACSU TRANSCRIPTION-REPAIR COUPLING FACTOR (T... 43 0.011 gi|3511015 (AF054624) transcription-repair coupling factor ... 42 0.020 gi|1173903 (U41059) reverse gyrase B subunit [Methanopyrus ... 41 0.034 sp|O34942|RECG_BACSU ATP-DEPENDENT DNA HELICASE RECG >gi|23... 41 0.044 gb|AAD19029| (AE001669) Transcription-Repair Coupling [Chla... 40 0.058 sp|O51568|MFD_BORBU TRANSCRIPTION-REPAIR COUPLING FACTOR (T... 39 0.099 gi|4090863 (AF023181) transcription-repair coupling factor ... 39 0.13 gb|AAF11469.1|AE002030_8 (AE002030) DNA helicase RecG [Dein... 39 0.17 emb|CAA15038| (AJ235272) ATP-DEPENDENT DNA HELICASE RECG (... 39 0.17 sp|O52236|MFD_MYXXA TRANSCRIPTION-REPAIR COUPLING FACTOR (T... 39 0.17 dbj|BAA31427| (AB010371) mszf90 [Mus musculus] 38 0.29 gb|AAF11095.1|AE001997_1 (AE001997) transcription-repair co... 38 0.38 sp|O67837|RECG_AQUAE ATP-DEPENDENT DNA HELICASE RECG >gi|29... 38 0.38 gb|AAD35703.1|AE001736_1 (AE001736) conserved hypothetical ... 37 0.50 gi|3322623 (AE001214) transcription-repair coupling factor ... 37 0.66 sp|P44418|OXYR_HAEIN HYDROGEN PEROXIDE-INDUCIBLE GENES ACTI... 37 0.66 emb|CAB49203.1| (AJ248283) ATP-dependent RNA helicase, EIF-... 36 0.86 gi|2983805 (AE000738) DNA ligase (ATP dependent) [Aquifex a... 36 0.86 gi|1698674 (U66557) reverse gyrase [Pyrococcus furiosus] 36 0.86 dbj|BAA22762| (AB007638) function unknown [Bacillus subtili... 36 1.1 sp|O50581|RECG_STAAU ATP-DEPENDENT DNA HELICASE RECG >gi|28... 36 1.5 gi|1518105 (U66098) comG operon protein 1-like [Streptococc... 36 1.5 sp|P17422|CLPB_BACNO CLPB PROTEIN >gi|97341|pir||C35905 ATP... 36 1.5 gi|145053 (M32229) ATP-dependent protease [Dichelobacter no... 36 1.5 dbj|BAA80373.1| (AP000061) 1222aa long hypothetical reverse... 35 1.9 sp|O69460|RECG_MYCLE ATP-DEPENDENT DNA HELICASE RECG >gi|31... 35 1.9 ref|NP_031428.1|| a disintegrin and metalloprotease domain ... 35 1.9 emb|CAA66648| (X98016) histone H4-2 [Trichomonas vaginalis]... 35 1.9gb|AAD35271.1|AE001702_11 (AE001702) primosomal protein N' [Thermotoga maritima] Length = 736 Score = 1454 bits (3723), Expect = 0.0 Identities = 727/736 (98%), Positives = 727/736 (98%) Query: 1 MYYKVAVSGSGKVLNVFSSEELLIGERVWLNWRNGKVKGYVLERSLSHENEATPSERDGK 60 MYYKVAVSGSGKVLNVFSSEELLIGERVWLNWRNGKVKGYVLERSLSHENEATPSERDGK Sbjct: 1 MYYKVAVSGSGKVLNVFSSEELLIGERVWLNWRNGKVKGYVLERSLSHENEATPSERDGK 60 Query: 61 SFLSEGHVEIAKWVSERFFSPLGMVFDLFFPQGIDDYKEEVVVSESPFLDFDRMTLRDFL 120 SFLSEGHVEIAKWVSERFFSPLGMVFDLFFPQGIDDYKEEVVVSESPFLDFDRMTLRDFL Sbjct: 61 SFLSEGHVEIAKWVSERFFSPLGMVFDLFFPQGIDDYKEEVVVSESPFLDFDRMTLRDFL 120 Query: 121 ENFGEKALKEMVKKGLVRVEKNFYVKEPRPRVKKRLFLKKRISEIIREHLTVKQRMVVEY 180 ENFGEKALKEMVKKGLVRVEKNFYVKEPRPRVKKRLFLKKRISEIIREHLTVKQRMVVEY Sbjct: 121 ENFGEKALKEMVKKGLVRVEKNFYVKEPRPRVKKRLFLKKRISEIIREHLTVKQRMVVEY 180 Query: 181 LQFNDGVPXXXXXXXXXVSKSVIETLQRKNIVEIVSGDVFPKKRRILRGDFKGNISKENL 240 LQFNDGVP VSKSVIETLQRKNIVEIVSGDVFPKKRRILRGDFKGNISKENL Sbjct: 181 LQFNDGVPLEELLEDLEVSKSVIETLQRKNIVEIVSGDVFPKKRRILRGDFKGNISKENL 240 Query: 241 FFGPTGSGKTEALFELIDVYSRKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSYLS 300 FFGPTGSGKTEALFELIDVYSRKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSYLS Sbjct: 241 FFGPTGSGKTEALFELIDVYSRKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSYLS 300 Query: 301 RARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIVVA 360 RARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIVVA Sbjct: 301 RARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIVVA 360 Query: 361 RKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLSVEVVDMRNEEKIGSFA 420 RKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLSVEVVDMRNEEKIGSFA Sbjct: 361 RKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLSVEVVDMRNEEKIGSFA 420 Query: 421 KKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSLKCH 480 KKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSLKCH Sbjct: 421 KKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSLKCH 480 Query: 481 QCGREYGLVESCPRCGGRLVGRTAGTERVERELKRYFPTRRIARVDREVVDNIMELESYI 540 QCGREYGLVESCPRCGGRLVGRTAGTERVERELKRYFPTRRIARVDREVVDNIMELESYI Sbjct: 481 QCGREYGLVESCPRCGGRLVGRTAGTERVERELKRYFPTRRIARVDREVVDNIMELESYI 540 Query: 541 DKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRA 600 DKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRA Sbjct: 541 DKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRA 600 Query: 601 SRGDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQVAVKSKNP 660 SRGDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQVAVKSKNP Sbjct: 601 SRGDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQVAVKSKNP 660 Query: 661 EVGKNSLTSLKEFLKGEEVLGPVEHWVFKLRGFYRHHLIVKTEDLERVLPKLEKALRILG 720 EVGKNSLTSLKEFLKGEEVLGPVEHWVFKLRGFYRHHLIVKTEDLERVLPKLEKALRILG Sbjct: 661 EVGKNSLTSLKEFLKGEEVLGPVEHWVFKLRGFYRHHLIVKTEDLERVLPKLEKALRILG 720 Query: 721 IDAIVRVDPPTLEVSD 736 IDAIVRVDPPTLEVSD Sbjct: 721 IDAIVRVDPPTLEVSD 736sp|P94461|PRIA_BACSU PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) >gi|2337800|emb|CAA74261| (Y13937) putative PriA protein [Bacillus subtilis] >gi|2633943|emb|CAB13444| (Z99112) primosomal replication factor Y (primosomal protein N') [Bacillus subtilis] Length = 805 Score = 301 bits (763), Expect = 1e-80 Identities = 209/712 (29%), Positives = 352/712 (49%), Gaps = 65/712 (9%) Query: 63 LSEGHVEIAKWVSERFFSPLGMVFDLFFPQGID-DYKEEVVVS---------ESPFLDFD 112 L+E + ++ W+S++ S P + Y++E+ ++ E F + Sbjct: 77 LTEELMILSSWLSDKTLSFKITALQAMLPAALKAKYEKELKIAHGADLPPQVERLFSETK 136 Query: 113 RMTLRDFLENFGEKALKEMVKKGLVRVEKNFYVKEPRPRVK------KRLFLKKRISEII 166 + D ++ K ++ V+KG + V K + V+ + L K+ + Sbjct: 137 TLLYSDIPDHETLKLIQRHVQKGDIDVTYKVAQKTNKKMVRHIQANASKEELAKQAEGLS 196 Query: 167 REHLTVKQRMVVEYLQFN-DGV--PXXXXXXXXXVSKSVIETLQRKNIVEIVSGDVF--P 221 R+ KQ+ ++ +L +GV P S + I+TL +K +++ +V+ P Sbjct: 197 RQ--AAKQQAILHFLISEPEGVKIPAAELCKKTDTSSATIKTLIQKGLLKESYEEVYRDP 254 Query: 222 KKRRI-------------------LRGDFKGNISKENLFFGPTGSGKTEALFELIDVYSR 262 + ++ +R + K L G TGSGKTE + I+ Sbjct: 255 YQDKMFKKTEPLPLTDEQRAAFEPIRETLDSDEHKVFLLHGVTGSGKTEIYLQSIEKVLA 314 Query: 263 KGT-VLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSYLSRARKNLEWYKAASGKIDVLLG 321 KG + LVPE+S+ ++R KG F ++ + HS LS K EW K ++ +++G Sbjct: 315 KGKEAIVLVPEISLTPQMVNRFKGRFGS-QVAVMHSGLSTGEKYDEWRKIHRKEVRLVVG 373 Query: 322 TRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIVVARKISEVFDVPIILSSATPDLW 381 RSA+F P +NL ++I+DEEH+ S+ Q P Y A VA K +E P++L SATP L Sbjct: 374 ARSAIFAPFENLGMIIIDEEHESSYKQEEMPRYHAKEVAIKRAEHHSCPVVLGSATPTLE 433 Query: 382 TYREAKEGRIRTFNFTRRFGSL---SVEVVDMRNEEKIGS---FAKKTLDRIEETLEEGK 435 +Y A++G + R V +VDMR E + G+ F+ + ++++EET+ +G+ Sbjct: 434 SYARAQKGVYELLSLKHRVNHRVMPEVSLVDMREELRNGNRSMFSVELMEKLEETIAKGE 493 Query: 436 RVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSLKCHQCGREYGLVESCPRC 495 + ++++ ++G+ V C CGYV +C +CD+S+ YH LKCH CG E + +CP C Sbjct: 494 QAVLFLNKRGYSSFVMCRDCGYVPQCPHCDISMTYHRYGQRLKCHYCGHEEPVPHTCPEC 553 Query: 496 GG---RLVGRTAGTERVERELKRYFPTRRIARVDREVVDNIMELESYIDKLIRGEIDILV 552 R G GT+RVE EL + P+ R+ R+D + E + G+ DIL+ Sbjct: 554 ASEHIRFFG--TGTQRVEEELTKVLPSARVIRMDVDTTSRKGAHEKLLSAFGEGKADILL 611 Query: 553 GTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQ-GKAIIQ 611 GT++I K L P + LV ++ D+ + PD+ S+ +TFQL+ Q GRA R ++ G IIQ Sbjct: 612 GTQMIAKGLDFPNVTLVGVLSADTTLHIPDFRSAEKTFQLLTQVSGRAGRHEKPGHVIIQ 671 Query: 612 TYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQVAVKSKNPEVGKNSLTSLK 671 TY P I+ D FY E+ R+ YPPY +L V V + EV K ++T+ K Sbjct: 672 TYTPSHYSIQLTKTHDYETFYQHEMAHRREQSYPPYYYLALVTV--SHEEVAKAAVTAEK 729 Query: 672 --EFLKGE-----EVLGPVEHWVFKLRGFYRHHLIVKTEDLERVLPKLEKAL 716 FLK ++LGP + +++ YR+ ++K + ++ L+K L Sbjct: 730 IAHFLKANCGADTKILGPSASPIARIKDRYRYQCVIKYKQETQLSALLKKIL 781emb|CAA71348| (Y10304) priA [Bacillus subtilis] Length = 577 Score = 288 bits (729), Expect = 1e-76 Identities = 170/496 (34%), Positives = 269/496 (53%), Gaps = 24/496 (4%) Query: 240 LFFGPTGSGKTEALFELIDVYSRKGT-VLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSY 298 L G TGSGKTE + I+ KG + LVPE+S+ ++R KG F ++ + HS Sbjct: 63 LLHGVTGSGKTEIYLQSIEKVLAKGKEAIVLVPEISLTPQMVNRFKGRFGS-QVAVMHSG 121 Query: 299 LSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIV 358 LS K EW K ++ +++G RSA+F P +NL ++I+DEEH+ S+ Q P Y A Sbjct: 122 LSTGEKYDEWRKIHRKEVRLVVGARSAIFAPFENLGMIIIDEEHESSYKQEEMPRYHAKE 181 Query: 359 VARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSL---SVEVVDMRNEEK 415 VA K +E P++L SATP L +Y A++G + R V +VDMR E + Sbjct: 182 VAIKRAEHHSCPVVLGSATPTLESYARAQKGVYELLSLKHRVNHRVMPEVSLVDMREELR 241 Query: 416 IGS---FAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHS 472 G+ F+ + ++++EET+ +G++ ++++ ++G+ V C CGYV +C +CD+S+ YH Sbjct: 242 NGNRSMFSVELMEKLEETIAKGEQAVLFLNKRGYSSFVMCRDCGYVPQCPHCDISMTYHR 301 Query: 473 DTHSLKCHQCGREYGLVESCPRCGG---RLVGRTAGTERVERELKRYFPTRRIARVDREV 529 LKCH CG E + +CP C R G GT+RVE EL + P+ R+ R+D + Sbjct: 302 YGQRLKCHYCGHEEPVPHTCPECASEHIRFFG--TGTQRVEEELTKVLPSARVIRMDVDT 359 Query: 530 VDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRT 589 E + G+ DIL+GT++I K L P + LV ++ D+ + PD+ S+ +T Sbjct: 360 TSRKGAHEKLLSAFGEGKADILLGTQMIAKGLDFPNVTLVGVLSADTTLHIPDFRSAEKT 419 Query: 590 FQLVVQALGRASRGDQ-GKAIIQTYNPEDTIIRKALEEDVNGFYAE-ELERRKALGYPPY 647 FQL+ Q GRA R ++ G IIQTY P I+ D + + R+ YPPY Sbjct: 420 FQLLTQVSGRAGRHEKPGHVIIQTYTPSHYSIQLTKTHDYETVLSSMKWRTRREQSYPPY 479 Query: 648 RHLIQVAVKSKNPEVGKNSLTSLK--EFLKGE-----EVLGPVEHWVFKLRGFYRHHLIV 700 +L V V + EV K ++T+ K FLK ++LGP + +++ YR+ ++ Sbjct: 480 YYLALVTV--SHEEVAKAAVTAEKIAHFLKANCGADTKILGPSASPIARIKDRYRYQCVI 537 Query: 701 KTEDLERVLPKLEKAL 716 K + ++ L+K L Sbjct: 538 KYKQETQLSALLKKIL 553gb|AAD19062| (AE001672) Primosomal Protein N' [Chlamydia pneumoniae] Length = 749 Score = 283 bits (716), Expect = 4e-75 Identities = 211/759 (27%), Positives = 359/759 (46%), Gaps = 93/759 (12%) Query: 20 EELLIGERVWLNWRNGKVKGYVLE-RSLSHENEATP--SERDGKSFLSEGHVEIAKWVSE 76 E + G V ++ R GK G + + ++ + + P D + L + +++ W+S+ Sbjct: 34 EHITKGTAVTISLRGGKKVGVIYQIKTTTQCKKILPILGLSDSEIVLPQDLLDLLFWISQ 93 Query: 77 RFFSPLGMVFDLFFPQGIDDYKEEVVVSESPFLDFDRMTLRDFLENFGEKALKEMVKKGL 136 +F+PLG LF P + + Sbjct: 94 YYFAPLGKTLKLFLPA---------------------------------------ISSNV 114 Query: 137 VRVEKNFYVKEPRPRVKKRLFLKKRISEIIREHLTVKQRMVVEYLQFNDGVPXXXXXXXX 196 ++ ++++ V + + K + L K E L Q V++ L + P Sbjct: 115 IQPKQHYRVVLKQSKAKTKEILAKL------EVLHPSQGAVLKILLQHASPPGLSSLMET 168 Query: 197 X-VSKSVIETLQRKNIVEIVSG----------DVFPKKRRILRGDFKGNISK-------- 237 VS+S I +L++ I++IV FP + L + + I K Sbjct: 169 AKVSQSPIHSLEKLGILDIVDAAQLELQEDLLTFFPPAPKDLHPEQQSAIDKIFSSLKTS 228 Query: 238 ---ENLFFGPTGSGKTEALFELIDVYSRKG-TVLFLVPEVSVLTHTLSRLKGAFPDLKIG 293 +L FG TGSGKTE ++G + + LVPE+++ T+S K F +G Sbjct: 229 QFHTHLLFGITGSGKTEIYLRATSEALKQGKSTILLVPEIALTVQTVSLFKARFGK-DVG 287 Query: 294 IYHSYLSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQ-HTRP 352 + H LS + K+ W +A+ G + +L+G RSA+F P+KNL L+IVDEEHD ++ Q + P Sbjct: 288 VLHHKLSDSDKSRTWRQASEGSLRILIGPRSALFCPMKNLGLIIVDEEHDPAYKQTESPP 347 Query: 353 SYDAIVVARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSL---SVEVVD 409 Y A VA ++ ++L SATP L +Y A G+ + R + + +++ Sbjct: 348 CYHARDVAVMRGKLAHATVVLGSATPSLESYTNALSGKYVLSRLSSRAAAAHPAKISLIN 407 Query: 410 MRNEEKIGS----FAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCD 465 M E + F++ L +I E LE G++VLI+ R+G+ V C VC + LKC +CD Sbjct: 408 MNLEREKSKTKILFSQPVLKKIAERLEVGEQVLIFFNRRGYHTNVSCTVCKHTLKCPHCD 467 Query: 466 VSLVYHSDTHSLKCHQCGRE-YGLVESCPRCGGRLV--GRTAGTERVERELKRYFPTRRI 522 + L +H + L CH C L +SCP+C G + R +GTE++E+ L++ FP R Sbjct: 468 MVLTFHKYANVLLCHLCNSSPKDLPQSCPKCLGTMTLQYRGSGTEKIEKILQQIFPQIRT 527 Query: 523 ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPD 582 R+D + E+ + + G+ D+L+GT++I K ++ + L I++ DS ++ PD Sbjct: 528 IRIDSDTTKFKGSHETLLRQFATGKADVLIGTQMIAKGMNFSAVTLAVILNGDSGLYIPD 587 Query: 583 YSSSLRTFQLVVQALGRASRGD-QGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKA 641 + +S + FQL+ Q GR+ R G+ +IQ++ P+ I A+ +D + FY++E+ R+ Sbjct: 588 FRASEQVFQLITQVAGRSGRSHLPGEILIQSFLPDHPTIHSAMRQDYSAFYSQEITGREL 647 Query: 642 LGYPPYRHLIQVAVKSKNP----EVGKNSLTSLKEFLKGEEVLGPVEH-WVFKLRGFYRH 696 YPP+ LI+ K P E LKE L+ L PV FK++ +R+ Sbjct: 648 CEYPPFIRLIRCIFMGKCPKQTWEEAHRVHNILKEQLESTNPLMPVTPCGHFKIKDTFRY 707 Query: 697 HLIVKTEDLERVLPKLEKALRILGIDAIVR----VDPPT 731 ++K+ + V KL AL + + V+ VDP T Sbjct: 708 QFLIKSAYVIPVNKKLHHALMLAKLSPKVKFMIDVDPMT 746sp|P44647|PRIA_HAEIN PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) >gi|1075169|pir||G64062 primosomal protein replication factor (priA) homolog - Haemophilus influenzae (strain Rd KW20) >gi|1573308 (U32718) primosomal protein N' (priA) [Haemophilus influenzae Rd] Length = 730 Score = 281 bits (711), Expect = 2e-74 Identities = 156/489 (31%), Positives = 272/489 (54%), Gaps = 16/489 (3%) Query: 240 LFFGPTGSGKTEALFELIDVYSRKGT-VLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSY 298 L G TGSGKTE + I+ + G VL LVPE+ + T+ R K F +++I + HS Sbjct: 222 LLDGVTGSGKTEIYLQYIEEILKSGKQVLVLVPEIGLTPQTVQRFKVRF-NVEIDVLHSN 280 Query: 299 LSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIV 358 L+ ++ W +A SG+ +++GTRSA+F NL +I+DEEHD S+ Q Y A Sbjct: 281 LTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIILDEEHDSSYKQQDSWRYHARD 340 Query: 359 VARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGS---LSVEVVDMRNEEK 415 +A +++ ++ +++ SATP L + + G+ + ++R G+ L V+D++N+ Sbjct: 341 LAIVLAQKLNISVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDLKNQNI 400 Query: 416 IGSFAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTH 475 +K L+R++ LE+G +VL+++ R+GF + C CG++ +C +C+ YH + Sbjct: 401 QNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQN 460 Query: 476 SLKCHQCGREYGLVESCPRCGG-RLVGRTAGTERVERELKRYFPTRRIARVDREVVDNIM 534 L+CH CG + + C CG LV GTE++E LK FP +AR+DR+ Sbjct: 461 VLRCHHCGAQKTIPRQCGDCGSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDSTSRKG 520 Query: 535 ELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVV 594 +LE Y++ + +G+ IL+GT+++ K P + LV +++VDS +F+ D+ + R QL + Sbjct: 521 KLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNVDSALFSLDFRAEERLAQLYI 580 Query: 595 QALGRASRGD-QGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQV 653 Q GRA R D QG+ ++QT+ P+ ++ L F E L+ R ++G PP+ + Sbjct: 581 QVAGRAGRADKQGEVVLQTHYPDHPLLTTLLANGYQAFAKETLQLRHSMGLPPFTFQALI 640 Query: 654 AVKSKNPEVGKNSLTSLKEF-----LKGEEVLGPVEHWVFKLRGFYRHHLIVKTEDLERV 708 ++++ ++ +N L+ + +F + G ++LGP+ K G YR L+++ Sbjct: 641 KAQARHSDLAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPS---- 696 Query: 709 LPKLEKALR 717 L+KALR Sbjct: 697 RMTLQKALR 705gb|AAC68373.1| (AE001350) Primosomal Protein N' [Chlamydia trachomatis] Length = 753 Score = 280 bits (710), Expect = 2e-74 Identities = 202/695 (29%), Positives = 336/695 (48%), Gaps = 56/695 (8%) Query: 63 LSEGHVEIAKWVSERFFSPLGMVFDLFFPQGIDDYKEEVVVSESPFLDFDRMTLRDFLEN 122 L + +++ W+S+ +F PLG LF P + + FL + ++ L+ Sbjct: 86 LPQDLIDLIFWISQYYFCPLGSAVSLFLPT-VYAQTHSTKHQNNVFLGQNAERTQEILKT 144 Query: 123 FGEKALKEMVKKGLVRVEKNFYVKEPRPRVKKRLFLKKRISEIIREHLTVKQRMVVEYLQ 182 +++K L K +P L K +S + L VKQ+ +++ Sbjct: 145 LDNPQQIAVLRKLL---------KTTKPLTPPELMRKTEVSAKTLDAL-VKQK----FIR 190 Query: 183 FNDGVPXXXXXXXXXVSKSVIETLQRKNI--VEIVSGDVFPKKRRILRGDFKGNISKENL 240 D TL ++ + V +S + ++ + L Sbjct: 191 IVDSADLEIQDEQLHYFLPDPPTLNQEQLDAVNTISQSLVAEQFQTC------------L 238 Query: 241 FFGPTGSGKTEALFELIDVYSRKG-TVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSYL 299 FG TGSGKTE ++I G +V+ LVPEV++ TLS K F ++G+ H L Sbjct: 239 LFGVTGSGKTEVYLQVIRKARALGKSVILLVPEVALTIQTLSFFKMHFGS-EVGVLHYKL 297 Query: 300 SRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPS-YDAIV 358 S + + WYKA+ G I++++G RSA+F P++NL L+IVDEEHD ++ Q P Y A Sbjct: 298 SDSERTQTWYKASRGLINIIIGPRSAIFCPIQNLGLIIVDEEHDSAYKQSDLPPFYQARD 357 Query: 359 VARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLS---VEVVDMRNE-- 413 VA ++ + +IL SATP L +Y A + ++R + + V ++DM E Sbjct: 358 VAVMRGKMTNATVILGSATPSLESYTNALSKKYTLSVLSKRASTSTPTKVFLIDMNLEME 417 Query: 414 --EKIGSFAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYH 471 K F++ + IE+ LE G++ +I+ R+GF V C C Y LKC +CD+ L +H Sbjct: 418 KTRKKPFFSQTVIRSIEQRLEVGEQTIIFFNRRGFHTNVSCSSCKYTLKCPHCDMILTFH 477 Query: 472 SDTHSLKCHQCGREYGL-VESCPRCGGRLV--GRTAGTERVERELKRYFPTRRIARVDRE 528 L CH C + SCP+C G + R AGTE++E L+ +FPT R R+D + Sbjct: 478 KTERILLCHLCNTRLSKPITSCPQCLGTMTLQYRGAGTEKIETLLREFFPTARTIRLDSD 537 Query: 529 VVDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLR 588 ++ + + G+ DIL+GT++I K + P + L ++ DS ++ PD+ ++ + Sbjct: 538 TTRFRGSHDALVKQFATGKADILIGTQMIAKGMHFPAVTLSVVLSGDSGLYIPDFRAAEQ 597 Query: 589 TFQLVVQALGRASRGD-QGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPY 647 FQL+ Q GR+ R G+ +IQT+ P+++ I AL +D FY EE+ RK YPP+ Sbjct: 598 VFQLITQVTGRSGRSHLPGEVLIQTFLPQNSTISHALAQDFPAFYKEEILGRKVCNYPPF 657 Query: 648 RHLIQVAVKSKNPEVGKNSL----TSLKEFLKGEEVL---GPVEHWVFKLRGFYRHHLIV 700 LI+ K + T +K+ L + L P H FK++ + + ++ Sbjct: 658 TRLIRCIFLGKCSDYTLKETQRVHTLIKQNLDSQASLMEISPCGH--FKVKDLFHYQFLI 715 Query: 701 KTEDLERVLPKLEKALRILGIDA----IVRVDPPT 731 KT ++ ++++AL + + IV VDP T Sbjct: 716 KTRNILVANKQIQEALAAAKLSSKVRCIVDVDPVT 750sp|P74397|PRIA_SYNY3 PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) >gi|1653581|dbj|BAA18494| (D90914) primosomal protein N [Synechocystis sp.] Length = 831 Score = 276 bits (699), Expect = 4e-73 Identities = 184/518 (35%), Positives = 272/518 (51%), Gaps = 24/518 (4%) Query: 240 LFFGPTGSGKTEALFELIDVYSRKG-TVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSY 298 L G TGSGKTE ++ KG +VL LVPE+ + R + F + K+ +YHS Sbjct: 314 LLHGVTGSGKTEVYLQICGDRLGKGQSVLVLVPEIGLTPQLTDRFRARFGN-KVAVYHSG 372 Query: 299 LSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQ-HTRPSYDAI 357 LS K W + G +++GTRSA+F P+ NL L+I+DEEHD SF Q P+Y A Sbjct: 373 LSSGEKYDTWRQTLLGHEQIVIGTRSAIFTPLPNLGLIILDEEHDSSFKQTQLTPNYHAR 432 Query: 358 VVARKISEVFDVPIILSSATPDL--W--TYREAKEGRIRTFNFTRRFGSLS---VEVVDM 410 VA++ +E+ P+IL SATP L W +R + + R S V++VDM Sbjct: 433 TVAQRRAELEQCPLILGSATPSLESWHTVHRHQNDPQRHYLELPERVQSRPLPPVQIVDM 492 Query: 411 RNEEKIGS---FAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVS 467 R E K G+ F++ + E + ++ ++++ R+G V C CGYVL+C NCDVS Sbjct: 493 RAELKQGNRSIFSRALQTALGELKAKQQQGILFINRRGHSTFVSCRSCGYVLECPNCDVS 552 Query: 468 LVYH----SDTHSLKCHQCGREYGLVESCPRCGGR-LVGRTAGTERVERELKRYFPTRRI 522 L YH + L+CH C + CP C L +GT++V L + FP R Sbjct: 553 LSYHYVQGNGQPLLRCHYCNHAEIQPKVCPECSSPYLKFFGSGTQKVTEALTQEFPDLRW 612 Query: 523 ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPD 582 R D + + +D+ RGE D+LVGT+++TK L + +I LV ++ DSL+ D Sbjct: 613 IRFDSDTTRRKGAHRALLDQFQRGEADLLVGTQMLTKGLDLAQITLVGVVAADSLLNFAD 672 Query: 583 YSSSLRTFQLVVQALGRASRGDQ-GKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKA 641 Y S+ R FQ + Q GRA RG++ G+ IIQTY P +I+ + +GF A+EL +R+ Sbjct: 673 YRSAERGFQTLTQVSGRAGRGEEPGQVIIQTYTPRHPVIQAVKTHNYHGFIAQELPQREM 732 Query: 642 LGYPPYRHLIQVAVKSKNP-EVGK--NSLTSLKEFL--KGEEVLGPVEHWVFKLRGFYRH 696 L YPPY LI + N EV K ++ L E L K E+LGP + ++ YR Sbjct: 733 LNYPPYGKLILLRCLGTNEREVEKTIQAIAVLCEQLLPKTVEILGPAPASILRIAQRYRW 792 Query: 697 HLIVKTEDLERVLPKLEKALRILGIDAIVRVDPPTLEV 734 L+VK +V+ LE+ +I + +D L + Sbjct: 793 QLLVKYPSFIKVILPLERIKQICPSSVYLDIDVDPLSI 830sp|Q45032|PRIA_BORBU PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) >gi|2687882 (AE001115) primosomal protein N (priA) [Borrelia burgdorferi] Length = 660 Score = 268 bits (679), Expect = 9e-71 Identities = 162/499 (32%), Positives = 276/499 (54%), Gaps = 21/499 (4%) Query: 237 KENLF--FGPTGSGKTEALFELIDVY-SRKGTVLFLVPEVSVLTHTLSRLKGAFP-DLKI 292 K N+F FG GSGKTE +L + Y + + VLFL+PE+S+ + R+K A KI Sbjct: 150 KTNVFYLFGIPGSGKTEIFIKLCEYYLALEQQVLFLIPEISLGYQIIKRIKYALNMHHKI 209 Query: 293 GIYHSYLSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRP 352 Y+S + + KNL W K +G+ V++G +S + +P L L+I+DEEH+ ++ P Sbjct: 210 YEYNSKVPNSDKNLIWNKVKNGESLVVIGIKSVLMLPFTKLKLIIMDEEHETTYKSENIP 269 Query: 353 SYDAIVVARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLSVEVVDMRN 412 + + ++ + + F+ ++ SATP L Y K +I+ +F +E + + N Sbjct: 270 RFHSRHISFFLQKKFNAKFVMGSATPSLEAYHAMKNNQIKKIIMQNKFSQSKIEDIKIIN 329 Query: 413 EEKIGS-FAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYH 471 +K S + + L I+++L E ++ LI++ ++G+ ++C CG+++ C NC L+YH Sbjct: 330 MKKEPSTISSELLYSIQKSLNEKRQSLIFINKRGYLKNLECNECGHIICCPNCSFGLIYH 389 Query: 472 SDTHSLKCHQCGREYGLVESCPRCGGR-LVGRTAGTERVERELKRYFPTRRIARVDREV- 529 + L CH C + CP+C + + +T G + VE+ELK++ P +IAR+D ++ Sbjct: 390 KKENKLLCHYCSYKTKTASHCPQCESKDIKYKTYGIQLVEKELKKFLPNAKIARIDSDIT 449 Query: 530 -VDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLR 588 ++NI + + +K EIDIL+GT++I K + I + I++ D + PD+ S R Sbjct: 450 KIENIDSINKFENK----EIDILIGTQIIAKGFNFENIKTLGIINADIGMGLPDFRSGER 505 Query: 589 TFQLVVQALGRASR-GDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPY 647 F + Q +GRA+R D IIQT NP I+ A + FY EEL+ RK L YPP+ Sbjct: 506 IFTTLSQIMGRAARFKDDNIIIIQTKNPNYYAIKYAYKNQYEQFYEEELDIRKKLNYPPF 565 Query: 648 RHLIQVAVKSKNPEVGKNS----LTSLKEFLKGE-EVLGPVEHWVFKLRGFYRHHLIVKT 702 +I++ +SKN E K KEFL+ E E LGP E + K+ YR+++I + Sbjct: 566 NKIIRIIFRSKNEESAKQKCWEFFEKSKEFLQEEIEHLGPSEAIMKKISKNYRYNIIYLS 625 Query: 703 ED---LERVLPKLEKALRI 718 + LE+++ K ++ +++ Sbjct: 626 KSYSLLEKLVNKTKEKVKM 644Score = 32.8 bits (73), Expect = 9.8 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 9/112 (8%) Query: 2 YYKVAVS-GSGKVLNVFSSEELLIGERVWLNWRNGKVKGYVLERSLSHENEATPSER--- 57 YY++A++ K+ + L IG RV +N+ G ++++ +E + + Sbjct: 10 YYEIAINIPLNKLFFYKFNLNLEIGIRVMVNFNGSNKIGIIIKKYFENEFKEKFEFKIKE 69 Query: 58 -----DGKSFLSEGHVEIAKWVSERFFSPLGMVFDLFFPQGIDDYKEEVVVS 104 D ++E ++++A W+S++ FS G PQ K + + S Sbjct: 70 IIKIIDTTKIITEHNIDLAHWISKKTFSGFGETLFFGLPQNSKAKKNQTLPS 121emb|CAA66080.1| (X97449) primosomal protein N [Borrelia burgdorferi] Length = 660 Score = 268 bits (677), Expect = 1e-70 Identities = 162/499 (32%), Positives = 275/499 (54%), Gaps = 21/499 (4%) Query: 237 KENLF--FGPTGSGKTEALFELIDVY-SRKGTVLFLVPEVSVLTHTLSRLKGAFP-DLKI 292 K N+F FG GSGKTE +L + Y + + VLFL+PE+S+ + R+K A KI Sbjct: 150 KTNVFYLFGIPGSGKTEIFIKLCEYYLALEQQVLFLIPEISLGYQIIKRIKYALNMHHKI 209 Query: 293 GIYHSYLSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRP 352 Y+S + + KNL W K +G+ V++G +S + +P L L+I+DEEH+ ++ P Sbjct: 210 YEYNSKVPNSDKNLIWNKVKNGESLVVIGIKSVLMLPFTKLKLIIMDEEHETTYKSENIP 269 Query: 353 SYDAIVVARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLSVEVVDMRN 412 + + ++ + + F+ ++ SATP L Y K +I+ +F +E + + N Sbjct: 270 RFHSRHISFFLQKKFNAKFVMGSATPSLEAYHAMKNNQIKKIIMQNKFSQSKIEDIKIIN 329 Query: 413 EEKIGS-FAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYH 471 +K S + + L I+++L E ++ LI++ ++G+ ++C CG+++ C NC L+YH Sbjct: 330 MKKEPSTISSELLYSIQKSLNEKRQSLIFINKRGYLKNLECNECGHIICCPNCSFGLIYH 389 Query: 472 SDTHSLKCHQCGREYGLVESCPRCGGR-LVGRTAGTERVERELKRYFPTRRIARVDREV- 529 + L CH C + CP+C + + +T G + VE+ELK++ P +IAR+D ++ Sbjct: 390 KKENKLLCHYCSYKTKTASHCPQCESKDIKYKTYGIQLVEKELKKFLPNAKIARIDSDIT 449 Query: 530 -VDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLR 588 ++NI + + +K EIDIL+GT++I K + I + I++ D + PD+ S R Sbjct: 450 KIENIDSINKFENK----EIDILIGTQIIAKGFNFENIKTLGIINADIGMGLPDFRSGER 505 Query: 589 TFQLVVQALGRASR-GDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPY 647 F + Q +GRA+R D IIQT NP I+ A + FY EEL RK L YPP+ Sbjct: 506 IFTTLSQIMGRAARFKDDNIIIIQTKNPNYYAIKYAYKNQYEQFYEEELNIRKKLNYPPF 565 Query: 648 RHLIQVAVKSKNPEVGKNS----LTSLKEFLKGE-EVLGPVEHWVFKLRGFYRHHLIVKT 702 +I++ +SKN E K KEFL+ E E LGP E + K+ YR+++I + Sbjct: 566 NKIIRIIFRSKNEESAKQKCWEFFEKSKEFLQEEIEHLGPSEAIMKKISKNYRYNIIYLS 625 Query: 703 ED---LERVLPKLEKALRI 718 + LE+++ K ++ +++ Sbjct: 626 KSYSLLEKLVNKTKEKVKM 644Score = 35.6 bits (80), Expect = 1.5 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 15/167 (8%) Query: 2 YYKVAVS-GSGKVLNVFSSEELLIGERVWLNWRNGKVKGYVLERSLSHENEATPSER--- 57 YY++A++ K+ + L IG RV +N+ G ++++ +E + + Sbjct: 10 YYEIAINIPLNKLFFYKFNLNLEIGIRVMVNFNGSNKIGIIIKKYFENEFKEKFEFKIKE 69 Query: 58 -----DGKSFLSEGHVEIAKWVSERFFSPLGMVFDLFFPQGIDDYKEEVVVSESPFLDFD 112 D ++E ++++A W+S++ FS G PQ K + + S + LD Sbjct: 70 IIKIIDTTKIITEHNIDLAHWISKKTFSGFGETLFFGLPQNSKAKKNQTLPSINEHLDHK 129 Query: 113 RMTLRDFLENFGEKALKEMVKKGLVRVEKNFYVKEPRPRVKKRLFLK 159 + L N + KE++ V FY+ K +F+K Sbjct: 130 KCL---ELNNEQQNIYKEIIGSEKTNV---FYLFGIPGSGKTEIFIK 170sp|P17888|PRIA_ECOLI PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) >gi|147345 (M33293) primosomal protein n' [Escherichia coli] Length = 732 Score = 260 bits (658), Expect = 2e-68 Identities = 160/513 (31%), Positives = 261/513 (50%), Gaps = 31/513 (6%) Query: 240 LFFGPTGSGKTEALFELID-VYSRKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSY 298 L G TGSGKTE +++ V ++ L +VPE+ + T++R + F + + + HS Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERF-NAPVEVLHSG 279 Query: 299 LSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDA-- 356 L+ + + W KA +G+ +++GTRSA+F P KNL ++++DEEHD S+ Q Y A Sbjct: 280 LNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARD 339 Query: 357 IVVARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLS---VEVVDMRNE 413 + V R SE +PIIL SATP L T ++ + R TRR G+ V+D++ + Sbjct: 340 LAVYRAHSE--QIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVLDLKGQ 397 Query: 414 EKIGSFAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSD 473 + A + R+ + L+ +V++++ R+GF + C CG++ +C CD H Sbjct: 398 KVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQA 457 Query: 474 THSLKCHQCGREYGLVESCPRCGG-RLVGRTAGTERVERELKRYFPTRRIARVDREVVDN 532 H L+CH C + + CP CG LV GTE++E+ L FP I+R+DR+ Sbjct: 458 QHHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSR 517 Query: 533 IMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQL 592 LE + ++ RG IL+GT+++ K P++ LV ++DVD +F+ D+ S+ R QL Sbjct: 518 KGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQL 577 Query: 593 VVQALGRASR-GDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLI 651 Q GRA R G QG+ ++QT++PE +++ L + + F + L R+ + PP+ + Sbjct: 578 YTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQRLAERRMMQLPPWTSHV 637 Query: 652 QVAVKSKNPEVGKNSLTSLKEFLKGEE-------VLGPVEHWVFKLRGFYR--------- 695 V + N + L L+ + VLGPV K G +R Sbjct: 638 IVRAEDHNNQHAPLFLQQLRNLILSSPLADEKLWVLGPVPALAPKRGGRWRWQILLQHPS 697 Query: 696 ----HHLIVKTEDLERVLPKLEKALRILGIDAI 724 H+I T L +P K +L +D I Sbjct: 698 RVRLQHIINGTLALINTIPDSRKVKWVLDVDPI 730pir||A35505 primosomal replication factor Y - Escherichia coli >gi|305038 (L19201) primosomal protein replication factor [Escherichia coli] >gi|1790370 (AE000467) primosomal protein N'(= factor Y)(putative helicase) [Escherichia coli] Length = 732 Score = 260 bits (657), Expect = 3e-68 Identities = 160/513 (31%), Positives = 261/513 (50%), Gaps = 31/513 (6%) Query: 240 LFFGPTGSGKTEALFELID-VYSRKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSY 298 L G TGSGKTE +++ V ++ L +VPE+ + T++R + F + + + HS Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERF-NAPVEVLHSG 279 Query: 299 LSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDA-- 356 L+ + + W KA +G+ +++GTRSA+F P KNL ++++DEEHD S+ Q Y A Sbjct: 280 LNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARD 339 Query: 357 IVVARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLS---VEVVDMRNE 413 + V R SE +PIIL SATP L T ++ + R TRR G+ V+D++ + Sbjct: 340 LAVYRAHSE--QIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVLDLKGQ 397 Query: 414 EKIGSFAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSD 473 + A + R+ + L+ +V++++ R+GF + C CG++ +C CD H Sbjct: 398 KVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQA 457 Query: 474 THSLKCHQCGREYGLVESCPRCGG-RLVGRTAGTERVERELKRYFPTRRIARVDREVVDN 532 H L+CH C + + CP CG LV GTE++E+ L FP I+R+DR+ Sbjct: 458 QHHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSR 517 Query: 533 IMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQL 592 LE + ++ RG IL+GT+++ K P++ LV ++DVD +F+ D+ S+ R QL Sbjct: 518 KGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQL 577 Query: 593 VVQALGRASR-GDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLI 651 Q GRA R G QG+ ++QT++PE +++ L + + F + L R+ + PP+ + Sbjct: 578 YTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAERRMMQLPPWTSHV 637 Query: 652 QVAVKSKNPEVGKNSLTSLKEFLKGEE-------VLGPVEHWVFKLRGFYR--------- 695 V + N + L L+ + VLGPV K G +R Sbjct: 638 IVRAEDHNNQHAPLFLQQLRNLILSSPLADEKLWVLGPVPALAPKRGGRWRWQILLQHPS 697 Query: 696 ----HHLIVKTEDLERVLPKLEKALRILGIDAI 724 H+I T L +P K +L +D I Sbjct: 698 RVRLQHIINGTLALINTIPDSRKVKWVLDVDPI 730dbj|BAA00491| (D00616) PriA [Escherichia coli] Length = 732 Score = 259 bits (654), Expect = 7e-68 Identities = 160/513 (31%), Positives = 261/513 (50%), Gaps = 31/513 (6%) Query: 240 LFFGPTGSGKTEALFELID-VYSRKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSY 298 L G TGSGKTE +++ V ++ L +VPE+ + T++R + F + + + HS Sbjct: 221 LLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERF-NAPVEVLHSG 279 Query: 299 LSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDA-- 356 L+ + + W KA +G+ +++GTRSA+F P KNL ++++DEEHD S+ Q Y A Sbjct: 280 LNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARD 339 Query: 357 IVVARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLS---VEVVDMRNE 413 + V R SE +PIIL SATP L T ++ + R TRR G+ V+D++ + Sbjct: 340 LAVYRAHSE--QIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVLDLKGQ 397 Query: 414 EKIGSFAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSD 473 + A + R+ + L+ +V++++ R+GF + C CG++ +C CD H Sbjct: 398 KVQAGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQA 457 Query: 474 THSLKCHQCGREYGLVESCPRCGG-RLVGRTAGTERVERELKRYFPTRRIARVDREVVDN 532 H L+CH C + + CP CG LV GTE++E+ L FP I+R+DR+ Sbjct: 458 QHHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPGVPISRIDRDTTSR 517 Query: 533 IMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQL 592 LE + ++ RG IL+GT+++ K P++ LV ++DVD +F+ D+ S+ R QL Sbjct: 518 KGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQL 577 Query: 593 VVQALGRASR-GDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLI 651 Q GRA R G QG+ ++QT++PE +++ L + + F + L R+ + PP+ + Sbjct: 578 YTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAERRMMQLPPWTSHV 637 Query: 652 QVAVKSKNPEVGKNSLTSLKEFLKGEE-------VLGPVEHWVFKLRGFYR--------- 695 V + N + L L+ + VLGPV K G +R Sbjct: 638 IVRAEDHNNQHVPLFLQQLRNLILSSPLADEKLWVLGPVPALAPKRGGRWRWQILLQHPS 697 Query: 696 ----HHLIVKTEDLERVLPKLEKALRILGIDAI 724 H+I T L +P K +L +D I Sbjct: 698 RVRLQHIINGTLALINTIPDSRKVKWVLDVDPI 730sp|O83258|PRIA_TREPA PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) >gi|3322498 (AE001204) primosomal protein N (priA) [Treponema pallidum] Length = 657 Score = 258 bits (653), Expect = 1e-67 Identities = 161/472 (34%), Positives = 252/472 (53%), Gaps = 19/472 (4%) Query: 243 GPTGSGKTEALFELID-VYSRKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSYLSR 301 G TGSGKTE + V +R +V++LVPE+++ L + F + + HS LS Sbjct: 156 GVTGSGKTEVFLRAAEAVLARGKSVIYLVPEIALTHQVLQEVYVRFGS-QAAVLHSALSG 214 Query: 302 ARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIVVAR 361 +++ EW + + V++G RSA+F P+K L L+I+DEEHD S+ P Y A VA Sbjct: 215 SQRLGEWRRIQCMRHCVVIGARSAIFAPLKRLGLVIMDEEHDSSYKSAHVPRYHARQVAM 274 Query: 362 KISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLS---VEVVDMRNEEKIGS 418 + P ++ SATP + + G +R T R + VEVVD+ E + Sbjct: 275 YRCADANCPFVMGSATPSVEAWYAMLRGAVRRLPLTARVAGGAPPRVEVVDVSKEALL-- 332 Query: 419 FAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSLK 478 + + +D I +T E G + ++++ R+GF QC CGY L C C V L +H +++ Sbjct: 333 LSTRLVDEIRKTKEAGYQSMLFLNRRGFSYSFQCRSCGYTLCCTQCAVPLTWHKRVGAMQ 392 Query: 479 CHQCGREYGLVESCPRCGG---RLVGRTAGTERVERELKRYFPTRRIARVDREVVDNIME 535 CH CGR+ ESCP C R G GTE +E ++ FP RIARVD + + + Sbjct: 393 CHYCGRQEAPPESCPCCHSFDTRYGG--VGTEYIEEAVQALFPEYRIARVDTDALRS-GH 449 Query: 536 LESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQ 595 ++ +++ G+ID+L+GT++I K + P + LV I D+ + PD+ ++ R+F L++Q Sbjct: 450 VQQTMEQFRAGKIDVLLGTQMIAKGFNFPTLRLVGIACADTGLHTPDFRAAERSFALMMQ 509 Query: 596 ALGRASR-GDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQVA 654 GRA R D G IIQT NP + A D FYA+EL +R+AL +PP+ LI+ Sbjct: 510 VAGRAGRYVDNGLVIIQTRNPAHPAVVCAQHGDCESFYAQELAQREALCFPPFVRLIRFV 569 Query: 655 VKSKNPEVGKNSLTSLKEFLK-----GEEVLGPVEHWVFKLRGFYRHHLIVK 701 +SK K++ + L G +VLGP V ++ G YR ++++ Sbjct: 570 FRSKTRRKAKDAAYAAHALLTAQMPLGADVLGPAACVVAQVAGSYRMQILLR 621emb|CAA14989| (AJ235272) POSSIBLE PRIMOSOMAL PROTEIN N (priA) [Rickettsia prowazekii] Length = 648 Score = 241 bits (609), Expect = 1e-62 Identities = 152/478 (31%), Positives = 251/478 (51%), Gaps = 16/478 (3%) Query: 236 SKENLFFGPTGSGKTEALFELIDVYSRKGT-VLFLVPEVSVLTHTLSRLKGAFPDLKIGI 294 +K L G TGSGKTE F +I Y KG VL ++PE+++ ++R F I I Sbjct: 137 NKPTLIKGVTGSGKTEIYFHIIADYLIKGRQVLIMLPEIALGKQIINRFIDRFGFEPI-I 195 Query: 295 YHSYLSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSY 354 ++S +++A+K + S K+ V++GTRS++F+P NL L+++DEEHD+S+ Q Y Sbjct: 196 WNSSVTKAQKKMILRGILSNKVKVVIGTRSSLFLPFHNLGLIVIDEEHDDSYKQDDNILY 255 Query: 355 DAIVVARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSL---SVEVVDMR 411 +A A + I+L SATP L T K + + R+ ++ ++E++DM Sbjct: 256 NARDTAIVRGKFDKAKIVLCSATPSLETIYNIKTHKYQLVTLANRYKNVDLPNIEIIDMT 315 Query: 412 NEE--KIGSFAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLV 469 E+ K +K +D I+ LE K+ L+++ R+G+ + C+ CG+ C+ C +V Sbjct: 316 KEKLPKNSYLSKILIDAIKGNLENKKQALLFLNRRGYAPLMLCKACGHRFTCKFCSAWMV 375 Query: 470 YHSDTHSLKCHQCGREYGLVESCPRC--GGRLVGRTAGTERVERELKRYFPTRRIARVDR 527 H T L+CH CG + + SCP C L G ER+ E FP +IA + + Sbjct: 376 LHKATKKLECHHCGYQSKIFSSCPECLEDETLTICGPGIERIAEEAMLLFPKSKIAVISK 435 Query: 528 EVVDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSL 587 + ++ + ++ EIDIL+GT++ITK P + LV ++D D N + +S Sbjct: 436 DHAKTPEKIAQLLHQMENLEIDILIGTQIITKGYHFPNLTLVGVIDADLGSNNAELRASE 495 Query: 588 RTFQLVVQALGRASRGD-QGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPP 646 RTFQL+ Q GRA RGD +G +Q+Y P++ I D + F+ ELE RKA PP Sbjct: 496 RTFQLLHQVGGRAGRGDSKGVVYLQSYYPDNIIFSYVKVGDEDRFFTNELEIRKAANMPP 555 Query: 647 YRHLIQVAV----KSKNPEVGKNSLTSLKEFLKGEEVLGPVEHWVFKLRGFYRHHLIV 700 + + + +SK ++ + + + ++LGP + KL G YR+ +++ Sbjct: 556 FSKTASLILSGFSESKILDIARKIVQIAPK--ANVKILGPARSLMSKLAGKYRYRILI 611sp|P05445|PRIA_RHORU PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) >gi|79577|pir||S08579 hypothetical protein 2 - Rhodospirillum rubrum >gi|46363|emb|CAA26334| (X02499) URF2 [Rhodospirillum rubrum] Length = 811 Score = 228 bits (575), Expect = 1e-58 Identities = 165/559 (29%), Positives = 254/559 (44%), Gaps = 70/559 (12%) Query: 240 LFFGPTGSGKTEALFELIDVYSRKGT-VLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSY 298 L G TGSGKTE FE I R+G L L+PE+++ R F + +HS Sbjct: 250 LLEGVTGSGKTEVYFEAIAETLRRGRQALVLLPEIALAAQWPRRFADRFGAAPVQ-WHSQ 308 Query: 299 LSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIV 358 + A + W A G+ V++G RSA+F+P +L L+IVDEEHD +F Q Y+A Sbjct: 309 MGAAARRRAWRAVALGRAPVVVGARSALFLPYPDLGLIIVDEEHDSAFKQEEGVPYNARD 368 Query: 359 VARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLS---VEVVDMR---- 411 +A + + P +L+SATP L T A++GR R RR G + ++D+R Sbjct: 369 MAVVRARLGGFPAVLASATPSLETIENARQGRYRHLVLPRRHGGAEMPEITLLDLRRAPP 428 Query: 412 -----------------------NEE----------------------------KIGSFA 420 N+E ++G + Sbjct: 429 QKWLPTDFAGPGGSEGLAAPGGANDEAEEQKAPPPSPTASPSPTASPSPMARPARLGWLS 488 Query: 421 KKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSLKCH 480 + +EETL G++VL+++ R+G+ C CG+ LKC C LV H L+CH Sbjct: 489 PPLITAVEETLAAGEQVLLFLNRRGYAPLTLCRSCGHRLKCPRCTAWLVEHRRDGRLRCH 548 Query: 481 QCGREYGLVESCPRCG--GRLVGRTAGTERVERELKRYFPTRRIARVDREVVDNIMELES 538 CG + + E+CP CG L G ER+ E FP R+ + V E + Sbjct: 549 HCGYQQPIPETCPACGVADSLAPCGPGVERLAEEAAHRFPKARMDVAASDTVTGPKEAAA 608 Query: 539 YIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALG 598 ++ +ID+++GT+++ K P I LV ++D D + D +S RT QL+ Q G Sbjct: 609 LATRIANHDIDLIIGTQIMAKGHHFPLITLVGVVDGDLGLTGGDLRASERTHQLLHQVAG 668 Query: 599 RASRGDQ-GKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQVAVK- 656 RA R ++ G+ +IQT +P ++ D F E R+AL PP+ L+ + + Sbjct: 669 RAGRAERPGRVLIQTVDPGHPVMEALASGDPALFLEVEAAERQALAMPPFGRLVALVISG 728 Query: 657 --SKNPEVGKNSLTSLKEFLKGEEVLGPVEHWVFKLRGFYRHHLIVKTEDLERVLPKLEK 714 S + +L G +VLGPV + LRG +RH L++K +V P + Sbjct: 729 EDSARVQAVAAALGRAAPMGPGLDVLGPVPAPLAMLRGRHRHRLLLKAARGVKVQPVVRH 788 Query: 715 ALRIL----GIDAIVRVDP 729 L ++ G+ V VDP Sbjct: 789 WLSLVSIPPGVKVQVDVDP 807gi|1905953 (U52368) rubredoxin oxidoreductase homolog [Clostridium acetobutylicum] Length = 393 Score = 224 bits (565), Expect = 2e-57 Identities = 133/368 (36%), Positives = 203/368 (55%), Gaps = 15/368 (4%) Query: 364 SEVFDVPIILSSATPDLWTY-REAKEGRIRTFNFTRRFGSL--SVEVVDMRNEEKIGS-- 418 S + D ++L SATP + TY + KE R G+L V VVDMR E + + Sbjct: 3 SAIEDCILVLGSATPAVETYYKTLKEDYDLITLKNRADGALMPEVSVVDMREELRENNKS 62 Query: 419 -FAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSL 477 F++ + I ETLE +++++++ R+G+ V C CGYV KC+NCDVS+ YH++ L Sbjct: 63 IFSRALYESILETLERKEQIILFLNRRGYSTFVSCRKCGYVFKCKNCDVSMTYHNNKGYL 122 Query: 478 KCHQCGREYGLVESCPRCGGRLVGR-TAGTERVERELKRYFPTRRIARVDREVVDNIMEL 536 CH CG + CP+CG + V AGTER+ERE+KR FP R R+DR+ Sbjct: 123 ICHYCGSTQRIPSVCPKCGSKYVKYFGAGTERIEREIKRLFPNARTVRMDRDTTVKKDSY 182 Query: 537 ESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQA 596 E YI DIL+GT++I K+L ++ LV ++ D + PDY + RTFQL+ Q Sbjct: 183 ERYIMASRTKGYDILIGTQMIAKALDFKDVTLVGVVAADLTLNLPDYRAGERTFQLLCQV 242 Query: 597 LGRASRGD-QGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQVAV 655 GRA RG +GK +IQTY+PE IR + D F+ EE++ R + YPP+ L+ + Sbjct: 243 SGRAGRGSKKGKVVIQTYSPESYAIRFSSTNDYRSFFKEEIKLRHDMDYPPFNKLLLLNF 302 Query: 656 KSKNPEVGKNSLTSLKEFLKGEE-------VLGPVEHWVFKLRGFYRHHLIVKTEDLERV 708 SKN ++ ++ + +FLK + VLGP + K+ YR +++K + V Sbjct: 303 SSKNEQLLIKNIQIVGDFLKNKAKEYSNIYVLGPCPSPISKINEAYRWQIVLKGDITYEV 362 Query: 709 LPKLEKAL 716 ++K++ Sbjct: 363 ACFIKKSI 370sp|O25149|PRIA_HELPY PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) >gi|2313488|gb|AAD07452.1| (AE000555) primosomal protein replication factor (priA) [Helicobacter pylori 26695] Length = 619 Score = 212 bits (533), Expect = 1e-53 Identities = 141/498 (28%), Positives = 254/498 (50%), Gaps = 17/498 (3%) Query: 239 NLFFGPTGSGKTEALFELI-DVYSRKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHS 297 +L FG TGSGKTE I +K + L LVPE+++ RLK F + +G++HS Sbjct: 128 SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIALTPQMQQRLKRVFKE-NLGLWHS 186 Query: 298 YLSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAI 357 LS+ +K K S +I +++GTRSA+F+P+K L L+IVDEEHD S+ H P Y+A Sbjct: 187 KLSQNQKKQFLEKLYSQEIKLVVGTRSALFLPLKELGLIIVDEEHDFSYKSHQSPMYNAR 246 Query: 358 VVARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLSVEVVDMRNEEKIG 417 + +S F + +IL SATP L +Y+ K+ + R+ ++ + E I Sbjct: 247 DLCLYLSHKFPIQVILGSATPSLNSYKRFKDKAL--VRLKGRYTPTQKNIIFEKTERFI- 303 Query: 418 SFAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSL 477 K L+ +++ L++ ++ +I+V + + + C+ C ++C C V++ H T+ L Sbjct: 304 --TPKLLEALQQVLDKNEQAIIFVPTRANFKTLLCQSCYKSVQCPFCSVNMSLHLKTNKL 361 Query: 478 KCHQCGREYGLVESCPRCGGR-LVGRTAGTERVERELKRYFPTRRIARVDREVVDNIMEL 536 CH C + + C C LVG+ GT +V +EL+ +IA +D++ +L Sbjct: 362 MCHYCHFSSPIPKICSACQSEVLVGKRIGTMQVLKELESLLEGAKIAILDKDHTSTQKKL 421 Query: 537 ESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQA 596 + ++ + +IL+GT++I+K ++ L ++ +D++I + Y + L+ Q Sbjct: 422 HNILNDFNAQKTNILIGTQMISKGHDYAKVSLAVVLGIDNIIKSNSYRALEEGVSLLYQI 481 Query: 597 LGRASRGDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQVAVK 656 GR++R G+ IQ+ +T + + ED F EL+ R L YPP+ L + K Sbjct: 482 AGRSARQISGQVFIQS---TETDLLENFLEDYEDFLQYELQERCEL-YPPFSRLCLLEFK 537 Query: 657 SKNPE----VGKNSLTSLKEFLKGEEVLGPVEHWVFKLRGFYRHHLIVKTEDLERVLPKL 712 KN E + + +L L+ L + + K+ YR+ +++++++ ++ + Sbjct: 538 HKNEEKAQQLSLKASQTLSSCLEKGVTLSNFKAPIEKIASSYRYLILLRSKNPLSLIKSV 597 Query: 713 EKALRIL-GIDAIVRVDP 729 L+ I V +DP Sbjct: 598 HAFLKSAPSIPCSVNMDP 615gi|4155576 (AE001528) PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori J99] Length = 619 Score = 205 bits (515), Expect = 1e-51 Identities = 139/498 (27%), Positives = 252/498 (49%), Gaps = 17/498 (3%) Query: 239 NLFFGPTGSGKTEALFELI-DVYSRKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHS 297 +L FG TGSGKTE I +K + L LVPE+++ RLK F + +G++HS Sbjct: 128 SLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIALTPQMQQRLKKVFKE-NLGLWHS 186 Query: 298 YLSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAI 357 LS+ +K K S +I +++GTRSA+F+P+K L L+IVDEEHD S+ P Y+A Sbjct: 187 KLSQNQKKQFLEKLYSQEIKLVVGTRSALFLPLKELGLIIVDEEHDFSYKSQQSPMYNAR 246 Query: 358 VVARKISEVFDVPIILSSATPDLWTYREAKEGRIRTFNFTRRFGSLSVEVVDMRNEEKIG 417 + +S F + +IL SATP L +Y+ K+ + R+ ++ + E I Sbjct: 247 DLCLYLSHKFPIQVILGSATPSLSSYQRFKDKAL--VRLKGRYTPTQKNIIFEKTERFI- 303 Query: 418 SFAKKTLDRIEETLEEGKRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSL 477 K L+ +++ +++ ++ +I+V + + + C C ++C C V++ H T+ L Sbjct: 304 --TPKLLEALKQVIDKNEQAIIFVPTRANFKTLLCPNCYKSVQCPFCSVNMSLHLKTNKL 361 Query: 478 KCHQCGREYGLVESCPRCGGR-LVGRTAGTERVERELKRYFPTRRIARVDREVVDNIMEL 536 CH C + + C C LVG+ GT +V +EL+ +IA +D++ +L Sbjct: 362 MCHYCHFSSPIPKICNACQSEVLVGKRIGTMQVLKELESLLEGAKIAILDKDHTSTPKKL 421 Query: 537 ESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQA 596 + ++ + +IL+GT++I+K ++ L ++ +D++I + Y + L+ Q Sbjct: 422 HNILNDFNAQKTNILIGTQMISKGHDYAKVSLAVVLGIDNIIKSNSYRALEEGVSLLYQI 481 Query: 597 LGRASRGDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLIQVAVK 656 GR++R G+ IQ+ +T + + ED F EL+ R L YPP+ L + K Sbjct: 482 AGRSARQISGQVFIQS---TETDLLENFLEDYEDFLQYELQERCEL-YPPFSRLCLLEFK 537 Query: 657 SKNPE----VGKNSLTSLKEFLKGEEVLGPVEHWVFKLRGFYRHHLIVKTEDLERVLPKL 712 KN E + + +L L+ L + + K+ YR+ +++++++ ++ + Sbjct: 538 HKNEEKAQQLSLEASQTLSLCLEKGVTLSNFKAPIEKIASSYRYLILLRSKNPLSLIKSV 597 Query: 713 EKALRIL-GIDAIVRVDP 729 L+ I V +DP Sbjct: 598 HAFLKTAPNIPCSVNMDP 615gb|AAF04765.1| (AF104227) putative primosomal replication factor N' [Listeria monocytogenes] Length = 213 Score = 123 bits (305), Expect = 6e-27 Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 10/209 (4%) Query: 325 AVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIVVARKISEVFDVPIILSSATPDLWTYR 384 AVF P+K+ I+ S Y Y A VA + + P++L SATP L ++ Sbjct: 1 AVFAPLKSR---IIYRRRARSEYNKKIIRYHARDVAIWRATKYQCPVVLGSATPSLESFA 57 Query: 385 EAKEGRIRTFNFTRRFGSLS---VEVVDMRNE---EKIGSFAKKTLDRIEETLEEGKRVL 438 AK+G R + V VVDMR E E F+ + L++I++ + + ++ + Sbjct: 58 RAKKGVYTLIELPSRVNDRAMPEVSVVDMREELRKENRTEFSTELLEKIKDRIAKKEQTV 117 Query: 439 IYVRRKGFWGRVQCEVCGYVLKCENCDVSLVYHSDTHSLKCHQCGREYGLVESCPRCGGR 498 + + R+G+ V C CGYV++C NCD+SL YH ++ +KCH CG E + + CP C G Sbjct: 118 LMLNRRGYSSFVMCRDCGYVVECPNCDISLTYHQSSNQMKCHYCGHEERVPQKCPSCEGE 177 Query: 499 LVGR-TAGTERVERELKRYFPTRRIARVD 526 + GT++VE L + P R+ R+D Sbjct: 178 HIRYFGTGTQKVEESLTKLIPEARVIRMD 206emb|CAA06805| (AJ006018) putative primosomal replication factor n' [Lactobacillus casei] Length = 485 Score = 111 bits (274), Expect = 3e-23 Identities = 110/414 (26%), Positives = 180/414 (42%), Gaps = 49/414 (11%) Query: 22 LLIGERVWLNWRNG--KVKGYVLERS--LSHENEATP--SERDGKSFLSEGHVEIAKWVS 75 L G RVW+ + G KV G V+ S ++ + P D L ++++KW++ Sbjct: 32 LQAGMRVWVQFGKGARKVSGMVVSVSDQSDYDGQLKPLLDVLDPAPVLDHELLKLSKWLA 91 Query: 76 ERFFSPLGMVFDLFFPQGIDDYKEEVVVSESPFLDFDRMT----LRDFLENFGEKALKEM 131 + +S P + + V V+E L D D L A +++ Sbjct: 92 QTTYSFWIACMQTMLPTMLKI--DAVKVAEPVKLTADEQQKYFGTADSLAIGSLNAEQQV 149 Query: 132 VKKGLVRVEK--NFYVKEPRPRVKKRLFLKKRIS----EIIREHL---TVKQ----RMVV 178 L + K F K+ R RVKK +L ++S REH+ KQ ++ Sbjct: 150 AVMKLAQAGKVSYFIFKKDRARVKKTFYLIPQLSLEQAAAEREHVRKNAAKQLKLLTLIG 209 Query: 179 EYLQFNDGVPXXXXXXXXXVSKSVIETLQRKNIVEIVSGDVF------------------ 220 E+ N ++K VI K +++ + + Sbjct: 210 EWAANNQHPALMTVEHQYGLTKPVINQAAEKGWLKLEGHETYRDPYPELQHQPLTKPLPL 269 Query: 221 -PKKRRI---LRGDFKGNISKENLFFGPTGSGKTEALFELI-DVYSRKGTVLFLVPEVSV 275 P+++ I + K L G TGSGKTE ++ V + T L LVPE+++ Sbjct: 270 TPEQQTIVTQINAAVAERDPKNFLLEGVTGSGKTEVYLQVTAQVLAAGQTALMLVPEIAL 329 Query: 276 LTHTLSRLKGAFPDLKIGIYHSYLSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSL 335 ++R+KG F + + HS LS K EW + A G+ V++G RSA F P+KN+ + Sbjct: 330 TPQMVNRVKGRF-GTHVAVMHSGLSDGEKYDEWRRIARGEAQVVVGARSAAFAPLKNIGV 388 Query: 336 LIVDEEHDESFYQHTRPSYDAIVVARKISEVFDVPIILSSATPDLWTYREAKEG 389 I+DEEH+ S+ Q + P Y A V K +++ P++L SATP L + A++G Sbjct: 389 FIMDEEHETSYKQDSGPRYHARDVLLKRAQIHHAPVVLGSATPSLESRARAEKG 442gi|2984070 (AE000755) putative protein [Aquifex aeolicus] Length = 678 Score = 86.2 bits (210), Expect = 8e-16 Identities = 148/722 (20%), Positives = 274/722 (37%), Gaps = 97/722 (13%) Query: 1 MYYKVAVS-GSGKVLNVFSSEELLIGERVWLNWRNGKVK-GYVLERSLSHENEATPSERD 58 M KVA+S G +L + IG RV ++GK G ++ S S D Sbjct: 1 MLVKVAISSGRTYLLECEDCPKNPIGYRVLFKGKSGKGSTGIIVGLSEGKAQGRVSSLPD 60 Query: 59 GKSFLSEGHVEIAKWVSERFFSPLGMVFDLFFPQGIDDYKEE-VVVSESPFLDFDRMTLR 117 ++ +EIAK + + + F P D Y+E V+++ + D+ +L+ Sbjct: 61 KLPLVNTKALEIAKDLGNYYLDIPWKILWSFIPASFDWYEENFVLLAPRNLKNLDKNSLQ 120 Query: 118 --------------DFLENFGEKALKEMVKKGLVRVEKNFYVKEPRPRVKKRLF-LKKRI 162 LE F + + + G++ + + + PRV++ ++ L + Sbjct: 121 VVEYIKKRRKVPYETLLERFDYRLIHLLKDHGIILKKTEWVI----PRVEEEVYSLNIPL 176 Query: 163 SEIIREHLTVKQRMVVEYLQFNDGVPXXXXXXXXXVSKSVIETLQR----------KNIV 212 E ++ + +++ ++E++ + V S + + L+R K + Sbjct: 177 EEALKRVRSKEKKELIEFINEREKVTKEELLEQGFKSSHINDLLKRGILKREILYPKALS 236 Query: 213 EIVSGDVFPKKRRILRGDFKGNISKENLFFGPTGSGKTEALFELIDVYSRKG-TVLFLVP 271 EI P +R ++ K L F L L+ G L L P Sbjct: 237 EIPLKQAPPLVKRKKGNEYLSTSFKRALDF----------LINLVAQNLGGGKNTLVLFP 286 Query: 272 EVSVLTHTLSRLKGAFPDLKIGIYHSYLSRARKNLE-WYKAASGKIDVLLGTRSAVFVPV 330 L L+ F + + I S + ++ E W++A V LG+ +VF+P Sbjct: 287 SKEELYRVSDELRNYFGEKVVEI--SARIKPKELYENWFRAHESGF-VFLGSFKSVFLPF 343 Query: 331 KNLSLLIVDEEHDESFYQHTRPSYDAIVVARKISEVFDVPIILSSATPDLWTYREAKEGR 390 L +++ E + + + D +A +S+ + +I +S P L ++ K+G Sbjct: 344 SELESVVLFNEQENTKFPAN--GVDLRRIAYLLSQKYASELIFTSPYPRLESFLLIKKG- 400 Query: 391 IRTFNFTRRFGSLSVEVVDMRNEEKIGSFAKKTLDRIEETLEEGKRVLIYVRRKGFWGRV 450 F + ++ + + + E K DR+EE R L V ++G+ Sbjct: 401 --IFKHRKEDFKANIYIHERKGEVITEETYKFINDRVEE------RTLFVVVKQGY-SYA 451 Query: 451 QCEVCGYVLKCENCDVSLVYHSDTHSLKCHQCGREYGLVE-SCPRCGGRLVGRTAGTERV 509 C C + +C C L + + + C + + YG CP CGG L G ER Sbjct: 452 YCPRCESLAECPECGSLLTFSKEKGEIFCPRVKKHYGSKAFECPSCGGELQEMGFGLERA 511 Query: 510 ERELKRYFPTRRIARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLV 569 +K +F R + N E Y + V Sbjct: 512 REVIKDFFSERE----NFSFTTNPKWFEEYEN---------------------------V 540 Query: 570 CIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNPEDTIIRKALEEDVN 629 I++ D+L+ P+Y S R LV+++L A ++ + + + I+ K EE Sbjct: 541 VILNADTLLSVPNYRSRERFLNLVLKSLRVAKNSLVIQSALISEEDKSLILNKNFEE--- 597 Query: 630 GFYAEELERRKALGYPPYRHLIQVAVKSKNPEVGKNSLTSLKEFLKGEEVLGPVEHWVFK 689 + EL+RRK PP+ L+ V + + E K ++ + F K E V ++ K Sbjct: 598 -LFERELKRRKEEFLPPFSRLVVVESEQEIDEFLKEKVS--ENFFKVYEEFREVYRYMLK 654 Query: 690 LR 691 + Sbjct: 655 FK 656emb|CAA26336| (X02499) URF2a [Rhodospirillum rubrum] Length = 220 Score = 84.7 bits (206), Expect = 2e-15 Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 8/210 (3%) Query: 528 EVVDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSL 587 + V E + ++ +ID+++GT+++ K P I LV ++D D + D +S Sbjct: 7 DTVTGPKEAAALATRIANHDIDLIIGTQIMAKGHHFPLITLVGVVDGDLGLTGGDLRASE 66 Query: 588 RTFQLVVQALGRASRGDQ-GKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPP 646 RT QL+ Q GRA R ++ G+ +IQT +P ++ D F E R+AL PP Sbjct: 67 RTHQLLHQVAGRAGRAERPGRVLIQTVDPGHPVMEALASGDPALFLEVEAAERQALAMPP 126 Query: 647 YRHLIQVAVK---SKNPEVGKNSLTSLKEFLKGEEVLGPVEHWVFKLRGFYRHHLIVKTE 703 + L+ + + S + +L G +VLGPV + LRG +RH L++K Sbjct: 127 FGRLVALVISGEDSARVQAVAAALGRAAPMGPGLDVLGPVPAPLAMLRGRHRHRLLLKAA 186 Query: 704 DLERVLPKLEKALRIL----GIDAIVRVDP 729 +V P + L ++ G+ V VDP Sbjct: 187 RGVKVQPVVRHWLSLVSIPPGVKVQVDVDP 216gi|2984128 (AE000759) repair excision nuclease subunit B [Aquifex aeolicus] Length = 663 Score = 68.3 bits (164), Expect = 2e-10 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 26/174 (14%) Query: 506 TERVERELKRYFPTRRIARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPE 565 T+R+ E+ Y R+I + +E I +L G ID++VG L+ + L +PE Sbjct: 457 TKRLAEEIADYLTERKIRAKYMHSELDAIERAQLIRELREGSIDVIVGVNLLREGLDLPE 516 Query: 566 IGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNPEDTIIRKALE 625 + LV IMD D F LR++Q ++Q +GRA+R GKAI+ I KA+E Sbjct: 517 VSLVAIMDADKEGF-------LRSYQALIQTIGRAARNIHGKAILYADR-----ITKAME 564 Query: 626 EDVNGFYAEELERRKALGYPPYRHLIQVAVKSKNPEVGKNSLTSLKEFLKGEEV 679 + + +E +RR+ IQ K+ K+ +KE L EE+ Sbjct: 565 KAI-----QETQRRRK---------IQEEFNKKHGITPKSIKKPVKELLAIEEL 604sp|Q55170|UVRB_SYNY3 EXCINUCLEASE ABC SUBUNIT B >gi|1001167|dbj|BAA10309| (D64001) excinuclease ABC subunit B [Synechocystis sp.] Length = 669 Score = 61.3 bits (146), Expect = 3e-08 Identities = 45/142 (31%), Positives = 77/142 (53%), Gaps = 11/142 (7%) Query: 486 YGLVESCPRCGGRLVGRTAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLI 544 YG +++ + R++ T T+R+ +L YF R I + + +I +E + L Sbjct: 436 YGEIQTRVKLKERVLITTL-TKRMAEDLTDYFSERGIKVQYLHSEIQSIQRIE-ILQALR 493 Query: 545 RGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGD 604 GE D+L+G L+ + L +PE+ LV IMD D F LR + ++Q +GRA+R Sbjct: 494 DGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGF-------LRAERSLIQTIGRAARHI 546 Query: 605 QGKAIIQTYNPEDTIIRKALEE 626 +G+AI+ N D+ ++KA+ E Sbjct: 547 RGQAILYADNFTDS-MQKAIAE 567sp|P71670|PRIA_MYCTU PUTATIVE PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) >gi|3256015|emb|CAB02196| (Z80108) priA [Mycobacterium tuberculosis] Length = 655 Score = 60.9 bits (145), Expect = 4e-08 Identities = 64/266 (24%), Positives = 100/266 (37%), Gaps = 13/266 (4%) Query: 265 TVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSYLSRARKNLEWYKAASGKIDVLLGTRS 324 TVL +VP+ L + + + L + W A G +++GTRS Sbjct: 171 TVLAIVPDQRDLDTLWQAATALVDEHSVVALSAGLGPEARYRRWLAALRGSARLVIGTRS 230 Query: 325 AVFVPVKNLSLLIVDEEHDESFYQHTRPSYDAIVVARKISEVFDVPIILSSATPDLWTYR 384 AVF P+ L L++V + D+S + P A VA + ++ + Sbjct: 231 AVFAPLSELGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAHA 290 Query: 385 EAKEGRIRTFNFTR---RFGSLSVEVVDMRNEEKIGSFAKKT-------LDRIEETLEEG 434 + G R R S V +D + A +T L L+ G Sbjct: 291 LVRSGWAHDVVAPRPEVRARSPRVVALDDSGYDDARDPAARTARLPSIALRAARSALQSG 350 Query: 435 KRVLIYVRRKGFWGRVQCEVCGYVLKCENCDVSL-VYHSDTHSLKCHQCGREYGLVESCP 493 VL+ V R+G+ + C C + +C +C L + + + C CGR + C Sbjct: 351 APVLVQVPRRGYIPSLACGRCRAIARCRSCTGPLSLQGAGSPGAVCRWCGRVDPTLR-CV 409 Query: 494 RCGGRLV-GRTAGTERVERELKRYFP 518 RCG +V G R EL R FP Sbjct: 410 RCGSDVVRAVVVGARRTAEELGRAFP 435gi|2688782 (AE001182) excinuclease ABC, subunit B (uvrB) [Borrelia burgdorferi] Length = 673 Score = 59.3 bits (141), Expect = 1e-07 Identities = 45/168 (26%), Positives = 83/168 (48%), Gaps = 17/168 (10%) Query: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+++ +L Y + A+ +D + +E I L + EID++VG L+ + L Sbjct: 455 TTLTKKMSEDLTEYLVNLGVRAKYLHSELDTLERVE-VISLLRKSEIDVIVGINLLREGL 513 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNPEDTIIR 621 +PE+ LV I+D D + F LR+ ++Q +GRA+R G +I Y+ +R Sbjct: 514 DIPEVSLVAILDADKVGF-------LRSTTSLIQTIGRAARNSNG-LVIMYYDKISLAMR 565 Query: 622 KALEEDVNGFYAEELERRKALGYPP------YRHLIQVAVKSKNPEVG 663 +A+EE N +++ K P +++++ + +KN VG Sbjct: 566 EAIEE-TNRRRQIQIDYNKKNNITPKTIVKKIQNILEKELNNKNKNVG 612sp|P72174|UVRB_PSEAE EXCINUCLEASE ABC SUBUNIT B >gi|1592818|emb|CAA63759| (X93486) uvrB [Pseudomonas aeruginosa] Length = 670 Score = 58.9 bits (140), Expect = 1e-07 Identities = 52/180 (28%), Positives = 81/180 (44%), Gaps = 28/180 (15%) Query: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+R+ +L Y + R +D + +E D L G D+LVG L+ + L Sbjct: 450 TTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVERVEIIRD-LRAGAFDVLVGINLLREGL 508 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNPEDTIIR 621 +PE+ LV I+D D F LR+ + ++Q +GRA+R GKAI+ N ++ R Sbjct: 509 DMPEVSLVAILDADKEGF-------LRSERSLIQTIGRAARNLHGKAILYADNVTGSMQR 561 Query: 622 KALEEDVNGFYAEELERRKALGYPPYRHLIQVAVKSKNPEVGKNSLTSLKEFLKGEEVLG 681 +E ERR+A Q+A + V K +K+ L+G V G Sbjct: 562 A----------IDETERRRAK---------QIAFNEAHGIVPKGVRKDIKDILEGAVVPG 602gb|AAD36825.1|AE001814_7 (AE001814) excinuclease ABC, subunit B [Thermotoga maritima] Length = 664 Score = 58.6 bits (139), Expect = 2e-07 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 22/193 (11%) Query: 534 MELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLV 593 +E + KL RG++D++VG L+ + L +PE+ LV IMD D LR+ + Sbjct: 478 IERVEVLKKLRRGDVDVVVGVNLLREGLDLPEVSLVAIMDA-------DVEGFLRSETTL 530 Query: 594 VQALGRASRGDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKALGYPPYRHLI-- 651 +Q +GR +R GK I+ Y T K E+ N +LE + G P R +I Sbjct: 531 IQIIGRTARNVNGKVIM--YADRITNAMKRAIEETNRRRRIQLEYNRKHGITP-RSVIKP 587 Query: 652 -------QVAVKSKNPEVGK--NSLTSLKEFLKGEEVLGPVEHWVFKLRGFYRHH-LIVK 701 Q VK + G ++ +K+ L EE + +E +++ R+ Sbjct: 588 LEIEVFEQFMVKEEPERYGDTVKNIFEMKKTLSPEEYMAVLEEEMYRAASELRYEDAAAL 647 Query: 702 TEDLERVLPKLEK 714 ++L R+ +++K Sbjct: 648 RDELFRIREEIKK 660sp|O26542|UVRB_METTH EXCINUCLEASE ABC SUBUNIT B >gi|2621508 (AE000828) excinuclease ABC subunit B [Methanobacterium thermoautotrophicum] Length = 646 Score = 58.6 bits (139), Expect = 2e-07 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 11/151 (7%) Query: 497 GRLVGRTAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTR 555 G V T T+R+ +L Y+ + R +D + +E ID L RGE D LVG Sbjct: 443 GERVLVTTLTKRMAEDLTDYYSRVGVKVRYLHSEIDTLERVE-IIDDLRRGEFDCLVGVN 501 Query: 556 LITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNP 615 L+ + L +PE+ LV I+D D F LR+ ++Q +GRA+R G+ +I Sbjct: 502 LLREGLDLPEVALVAILDADKEGF-------LRSETSLIQTIGRAARNVNGEVLIYAGRF 554 Query: 616 EDTIIRKALEEDVNGFYAEELERRKALGYPP 646 D+++ A E N ++E + G P Sbjct: 555 TDSVM--AAVETTNRRRKLQMEYNRRHGIKP 583emb|CAA27314| (X03678) uvrB [Escherichia coli] Length = 673 Score = 57.0 bits (135), Expect = 5e-07 Identities = 38/109 (34%), Positives = 57/109 (51%), Gaps = 9/109 (8%) Query: 503 TAGTERVERELKRYFPTR-RIARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+R+ +L Y R R +D + +E D L GE D+LVG L+ + L Sbjct: 452 TTLTKRMAEDLTEYLEEHGERVRYLRSDIDTVERMEIIRD-LRLGEFDVLVGINLLREGL 510 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610 +PE+ LV I+D D F LR+ + ++Q +GRA+R GKAI+ Sbjct: 511 DMPEVSLVAILDADKEGF-------LRSERSLIQTIGRAARNVNGKAIL 552gb|AAF11823.1|AE002060_2 (AE002060) excinuclease ABC, subunit B [Deinococcus radiodurans] Length = 730 Score = 56.2 bits (133), Expect = 9e-07 Identities = 46/182 (25%), Positives = 86/182 (46%), Gaps = 28/182 (15%) Query: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+R+ +L Y + + AR +D++ E + I L G D+LVG L+ + L Sbjct: 506 TTLTKRMSEDLTEYLLEKGVKARYLHSDIDSV-ERQVIIRDLRLGHYDVLVGINLLREGL 564 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNPEDTIIR 621 +PE+ LV I+D D F LR+ + ++Q +GRA+R G+ I+ ++ Sbjct: 565 DLPEVSLVAILDADKPGF-------LRSDRALIQTIGRAARNVNGEVILYA-----DVVT 612 Query: 622 KALEEDVNGFYAEELERRKALGYPPYRHLIQVAVKSKNPEVGKNSLTSLKEFLKGEEVLG 681 A+ F +E RR+ Q+A ++ + + +++ ++GEE+ G Sbjct: 613 PAMR-----FAMDETARRREK---------QLAYNEEHGITPRTVIKGVRDVIRGEELEG 658 Query: 682 PV 683 + Sbjct: 659 EI 660gi|4097425 (U59874) UvrB exinuclease subunit B [Mycoplasma pulmonis] Length = 660 Score = 56.2 bits (133), Expect = 9e-07 Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 506 TERVERELKRYFPTRRIARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPE 565 T++ EL + ++I I E + L G+ D++VG L+ + + +PE Sbjct: 455 TKKNAEELSLFLQEKKIKSAYIHDRFKIFERNEILKGLRMGKFDVVVGINLLKEGIDLPE 514 Query: 566 IGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNPEDTIIRKALE 625 + L+C+++ DS + +R + ++Q +GRA+R D GK I N + +R+ +E Sbjct: 515 VSLICVLNADS-------TGLMRDTRSLIQIVGRAARNDHGKVIFYA-NEITSSMRECIE 566 Query: 626 EDVNGFYAEELERRKALGYPPYRHLI--QVAVKSKNPEVGKNSLTSLKEFLKGEEVLGPV 683 ++ L +RK +H I + VK P + L+ GE+ L + Sbjct: 567 DN--------LFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNGILSEDHSKYYGEKDLSQM 618 Query: 684 EH 685 +H Sbjct: 619 KH 620dbj|BAA35437| (D90716) UvrB protein. [Escherichia coli] Length = 506 Score = 55.0 bits (130), Expect = 2e-06 Identities = 37/109 (33%), Positives = 56/109 (50%), Gaps = 9/109 (8%) Query: 503 TAGTERVERELKRYFPTR-RIARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+R+ +L Y R +D + +E D L GE D+LVG L+ + L Sbjct: 285 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD-LRLGEFDVLVGINLLREGL 343 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610 +PE+ LV I+D D F LR+ + ++Q +GRA+R GKAI+ Sbjct: 344 DMPEVSLVAILDADKEGF-------LRSERSLIQTIGRAARNVNGKAIL 385sp|P45125|UVRB_HAEIN EXCINUCLEASE ABC SUBUNIT B >gi|1074062|pir||G64112 excinuclease ABC subunit B (uvrB) homolog - Haemophilus influenzae (strain Rd KW20) >gi|1574178 (U32804) excinuclease ABC, subunit B (uvrB) [Haemophilus influenzae Rd] Length = 679 Score = 55.0 bits (130), Expect = 2e-06 Identities = 37/109 (33%), Positives = 57/109 (51%), Gaps = 9/109 (8%) Query: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+++ +L Y I R +D + +E D L GE D+LVG L+ + L Sbjct: 457 TTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTVERVEIIRD-LRLGEFDVLVGINLLREGL 515 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610 +PE+ LV I+D D F LR+ + ++Q +GRA+R GKAI+ Sbjct: 516 DIPEVSLVAILDADKEGF-------LRSERSLIQTIGRAARNLNGKAIL 557sp|P07025|UVRB_ECOLI EXCINUCLEASE ABC SUBUNIT B >gi|73010|pir||BVECUB uvrB protein - Escherichia coli >gi|43286|emb|CAA27357| (X03722) uvrB gene product (AA 1 - 673) [Escherichia coli] >gi|1786996 (AE000180) DNA repair; excision nuclease subunit B [Escherichia coli] Length = 673 Score = 55.0 bits (130), Expect = 2e-06 Identities = 37/109 (33%), Positives = 56/109 (50%), Gaps = 9/109 (8%) Query: 503 TAGTERVERELKRYFPTR-RIARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+R+ +L Y R +D + +E D L GE D+LVG L+ + L Sbjct: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD-LRLGEFDVLVGINLLREGL 510 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610 +PE+ LV I+D D F LR+ + ++Q +GRA+R GKAI+ Sbjct: 511 DMPEVSLVAILDADKEGF-------LRSERSLIQTIGRAARNVNGKAIL 552sp|P47319|UVRB_MYCGE EXCINUCLEASE ABC SUBUNIT B >gi|1361506|pir||A64208 excinuclease ABC chain B - Mycoplasma genitalium (SGC3) >gi|1045749 (U39687) excinuclease ABC subunit B (uvrB) [Mycoplasma genitalium] Length = 656 Score = 54.3 bits (128), Expect = 3e-06 Identities = 39/126 (30%), Positives = 64/126 (49%), Gaps = 12/126 (9%) Query: 503 TAGTERVERELKRYFPTRRI--ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKS 560 T T ++ L Y R+I A + +++ +E I+ L RGE + LVG L+ + Sbjct: 455 TVLTIKMAENLTEYLKERKIKVAYIHKDI--KALERLLLINDLRRGEYECLVGINLLREG 512 Query: 561 LSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNPEDTII 620 L VPE+ LVCI D D D S ++Q +GRA+R + G+ ++ N + Sbjct: 513 LDVPEVALVCIFDADIPGLPRDERS-------LIQIIGRAARNEHGRVVMYA-NHVTEQM 564 Query: 621 RKALEE 626 +KA++E Sbjct: 565 QKAIDE 570sp|P94846|UVRB_HELPY EXCINUCLEASE ABC SUBUNIT B >gi|2314265|gb|AAD08158.1| (AE000617) excinuclease ABC subunit B (uvrB) [Helicobacter pylori 26695] Length = 658 Score = 53.9 bits (127), Expect = 5e-06 Identities = 45/142 (31%), Positives = 67/142 (46%), Gaps = 17/142 (11%) Query: 497 GRLVGRTAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTR 555 G V T T+++ EL +Y+ + AR +D I E I L E DIL+G Sbjct: 448 GERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAI-ERNHIIRSLRLKEFDILIGIN 506 Query: 556 LITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNP 615 L+ + L +PE+ LV IMD D F LR+ ++Q +GRA+R GK ++ Sbjct: 507 LLREGLDLPEVSLVAIMDADKEGF-------LRSETSLIQTMGRAARNANGKVLLYAKKI 559 Query: 616 --------EDTIIRKALEEDVN 629 E T R+A +E+ N Sbjct: 560 TQSMQKAFEITSYRRAKQEEFN 581gb|AAD46146.2|AF102847_1 (AF102847) excinuclease ABC subunit B [Xanthomonas campestris pv. campestris] Length = 673 Score = 53.5 bits (126), Expect = 6e-06 Identities = 37/109 (33%), Positives = 57/109 (51%), Gaps = 9/109 (8%) Query: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+R+ L Y I R +D + +E D L G+ D+LVG L+ ++L Sbjct: 452 TTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVERVEIIRD-LRLGKFDVLVGINLLREAL 510 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610 +PE+ LV I+D D F LR+ ++Q +GRA+R +GKAI+ Sbjct: 511 DMPEVSLVAILDADKEGF-------LRSTGSLIQTIGRAARNLRGKAIL 552pir||S03812 uvrB protein - Micrococcus luteus Length = 709 Score = 53.5 bits (126), Expect = 6e-06 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 18/113 (15%) Query: 530 VDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRT 589 VD + +E + +L +G D+LVG L+ + L +PE+ LV I+D D F LR+ Sbjct: 487 VDTLRRVE-LLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGF-------LRS 538 Query: 590 FQLVVQALGRASRGDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKAL 642 ++Q +GRA+R G+ + N D+ +R+A+ EE ERR+A+ Sbjct: 539 TTSLIQTIGRAARNVSGEVHMYAGNVTDS-MRRAI---------EETERRRAV 581sp|P10125|UVRB_MICLU EXCINUCLEASE ABC SUBUNIT B >gi|44455|emb|CAA31090| (X12578) uvrB homologoue (AA 1-709) [Micrococcus luteus] Length = 709 Score = 53.5 bits (126), Expect = 6e-06 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 18/113 (15%) Query: 530 VDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRT 589 VD + +E + +L +G D+LVG L+ + L +PE+ LV I+D D F LR+ Sbjct: 487 VDTLRRVE-LLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGF-------LRS 538 Query: 590 FQLVVQALGRASRGDQGKAIIQTYNPEDTIIRKALEEDVNGFYAEELERRKAL 642 ++Q +GRA+R G+ + N D+ +R+A+ EE ERR+A+ Sbjct: 539 TTSLIQTIGRAARNVSGEVHMYAGNVTDS-MRRAI---------EETERRRAV 581sp|Q9ZDW2|UVRB_RICPR EXCINUCLEASE ABC SUBUNIT B >gi|3860767|emb|CAA14668| (AJ235270) EXCINUCLEASE ABC SUBUNIT B (uvrB) [Rickettsia prowazekii] Length = 662 Score = 53.1 bits (125), Expect = 8e-06 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 9/81 (11%) Query: 532 NIMELE--SYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRT 589 NI LE + L +G IDILVG L+ + + +PE GLV I+D D F LR+ Sbjct: 478 NIHTLERIEILRNLRQGTIDILVGINLLREGIDIPECGLVAILDADKEGF-------LRS 530 Query: 590 FQLVVQALGRASRGDQGKAII 610 ++Q +GRA+R +GK I+ Sbjct: 531 ETSLIQTIGRAARNSRGKVIL 551sp|O33395|UVRB_NEIME EXCINUCLEASE ABC SUBUNIT B >gi|2909345|emb|CAA74675| (Y14299) ultraviolet resistance protein [Neisseria meningitidis] Length = 675 Score = 53.1 bits (125), Expect = 8e-06 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 497 GRLVGRTAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTR 555 G V T T+R+ +L Y+ I R +D + +E D L G D+LVG Sbjct: 451 GERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRD-LRLGLFDVLVGIN 509 Query: 556 LITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNP 615 L+ + L +PE+ LV I+D D F LR+ + ++Q +GRA+R G AI+ Sbjct: 510 LLREGLDIPEVSLVAILDADKEGF-------LRSHRSLIQTIGRAARNVNGVAILYADKI 562 Query: 616 EDTIIRKALEE 626 D+ ++ A++E Sbjct: 563 TDS-MKAAIDE 572gi|4155631 (AE001532) EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99] Length = 658 Score = 52.7 bits (124), Expect = 1e-05 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 17/142 (11%) Query: 497 GRLVGRTAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTR 555 G V T T+++ EL +Y+ + R +D I E I L E D+L+G Sbjct: 448 GERVLITTLTKKMAEELCKYYAEWGLKVRYMHSEIDAI-ERNHIIRSLRLKEFDVLIGIN 506 Query: 556 LITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNP 615 L+ + L +PE+ LV IMD D F LR+ ++Q +GRA+R GK ++ Sbjct: 507 LLREGLDLPEVSLVAIMDADKEGF-------LRSETSLIQTMGRAARNANGKVLLYAKKT 559 Query: 616 --------EDTIIRKALEEDVN 629 E T R+A +E+ N Sbjct: 560 TQSMQKAFEITSYRRAKQEEFN 581sp|Q50939|UVRB_NEIGO EXCINUCLEASE ABC SUBUNIT B >gi|1084061|pir||B56262 uvrB protein - Neisseria gonorrhoeae >gi|555749 (U11547) UvrB [Neisseria gonorrhoeae] Length = 675 Score = 52.7 bits (124), Expect = 1e-05 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 497 GRLVGRTAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTR 555 G V T T+R+ +L Y+ I R +D + +E D L G D+LVG Sbjct: 451 GERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRD-LRLGLFDVLVGIN 509 Query: 556 LITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNP 615 L+ + L +PE+ LV I+D D F LR+ + ++Q +GRA+R G AI+ Sbjct: 510 LLREGLDIPEVSLVAILDADKEGF-------LRSHRSLIQTIGRAARNVNGVAILYADKI 562 Query: 616 EDTIIRKALEE 626 D+ ++ A++E Sbjct: 563 TDS-MKAAVDE 572gi|1737482 (U80807) UvrB [Helicobacter pylori] Length = 658 Score = 51.9 bits (122), Expect = 2e-05 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 17/142 (11%) Query: 497 GRLVGRTAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTR 555 G V T T+++ EL +Y+ + R +D I E I L E D+L+G Sbjct: 448 GERVLITTLTKKMAEELCKYYAEWGLKVRYMHSEIDAI-ERNHIIRSLRLKEFDVLIGIN 506 Query: 556 LITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNP 615 L+ + L +PE+ LV IMD D F LR+ ++Q +GRA+R GK ++ Sbjct: 507 LLREGLDLPEVSLVAIMDADKEGF-------LRSETSLIQTMGRAARNANGKVLLYAKKI 559 Query: 616 --------EDTIIRKALEEDVN 629 E T R+A +E+ N Sbjct: 560 TQSMQKAFEITSYRRAKQEEFN 581sp|Q54986|UVRB_STRPN EXCINUCLEASE ABC SUBUNIT B >gi|98054|pir||A42385 uvr-402 protein - Streptococcus pneumoniae plasmid pSB470 >gi|153854 (M80215) uvs402 protein [Streptococcus pneumoniae] Length = 668 Score = 51.2 bits (120), Expect = 3e-05 Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 16/182 (8%) Query: 503 TAGTERVERELKRYFPTRRIARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSLS 562 T T+++ +L YF I +E I L G D+LVG L+ + + Sbjct: 462 TTLTKKMAEDLTDYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGID 521 Query: 563 VPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQ----TYNPEDT 618 VPE+ LV I+D D F LR + ++Q +GRA+R +G I+ T + + Sbjct: 522 VPEVSLVAILDADKEGF-------LRNERGLIQTIGRAARNSEGHVIMYADTVTQSMQRA 574 Query: 619 IIRKALEEDVNGFYAEELERRKALGYPPYRHLIQV---AVKSKNPEVGKNSLT--SLKEF 673 I A + Y EE R LI V K ++ EV NSL KE Sbjct: 575 IDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIAVTKAVAKEEDKEVDINSLNKQERKEL 634 Query: 674 LK 675 +K Sbjct: 635 VK 636gi|3043868 (U95835) extracellular protein Exp5 precursor [Lactococcus lactis] Length = 455 Score = 50.8 bits (119), Expect = 4e-05 Identities = 37/125 (29%), Positives = 59/125 (46%), Gaps = 13/125 (10%) Query: 503 TAGTERVERELKRYFPTRRIARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSLS 562 T T+++ +L YF I +E I L G D+LVG L+ + + Sbjct: 344 TTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGID 403 Query: 563 VPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNPEDTIIRK 622 VPE+ LV I+D D F LR + ++Q +GRA+R +G I+ + + K Sbjct: 404 VPEVSLVAILDADKEGF-------LRNERGLIQTIGRAARNSEGHVILY------SDMAK 450 Query: 623 ALEED 627 AL+E+ Sbjct: 451 ALDEN 455gi|4156075 (AE001567) TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99] Length = 1001 Score = 50.4 bits (118), Expect = 5e-05 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 230 DFKGNISKENLFFGPTGSGKTEALFELIDVYSRKGTVLFLVPEVSVLTHT-LSRLKGAFP 288 D + + L G G GKTE I G LV ++L H LK F Sbjct: 499 DLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPTTLLAHQHFETLKARFE 558 Query: 289 D--LKIGIYHSYLSRARKNLEWYKAASGKIDVLLGTRSAVFVPVKNLSLLIVDEEH 342 + +K+ Y+ + K+ G +DVL+GT + + KNL L++VDEEH Sbjct: 559 NFGVKVARLDRYIKTSEKSKLLKAVELGLVDVLIGTHAILGTKFKNLGLMVVDEEH 614Score = 33.6 bits (75), Expect = 5.7 Identities = 21/81 (25%), Positives = 39/81 (47%), Gaps = 5/81 (6%) Query: 262 RKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYHSYLSRARKNLEWYKAASGKIDVLLG 321 R G + ++ ++ ++ ++L+ P LKI I HS ++ + A G VLL Sbjct: 690 RNGQIFYIHNHIASISKVKTKLEDLIPKLKIAILHSQINANESEEIMLEFAKGNYQVLLC 749 Query: 322 T---RSAVFVPVKNLSLLIVD 339 T S + +P N + +I+D Sbjct: 750 TSIVESGIHLP--NANTIIID 768sp|O06150|UVRB_MYCTU EXCINUCLEASE ABC SUBUNIT B >gi|2113917|emb|CAB08886| (Z95554) uvrB [Mycobacterium tuberculosis] Length = 698 Score = 50.0 bits (117), Expect = 7e-05 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 17/143 (11%) Query: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+++ +L Y I R VD + +E + +L G+ D+LVG L+ + L Sbjct: 453 TTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLRRVE-LLRQLRLGDYDVLVGINLLREGL 511 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAIIQTYNPEDTIIR 621 +PE+ LV I+D D F LR+ + ++Q +GRA+R G+ + D+ +R Sbjct: 512 DLPEVSLVAILDADKEGF-------LRSSRSLIQTIGRAARNVSGEVHMYADKITDS-MR 563 Query: 622 KALEEDVNGFYAEELERRKALGY 644 +A++E E R K + Y Sbjct: 564 EAIDE-------TERRRAKQIAY 579sp|Q56998|UVRB_ZYMMO EXCINUCLEASE ABC SUBUNIT B >gi|498140 (L33777) ABC excision endonuclease subunit [Zymomonas mobilis] >gi|1583684|prf||2121335A uvrB gene [Zymomonas mobilis] Length = 284 Score = 50.0 bits (117), Expect = 7e-05 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 9/109 (8%) Query: 503 TAGTERVERELKRYFPTRRI-ARVDREVVDNIMELESYIDKLIRGEIDILVGTRLITKSL 561 T T+R+ +L Y + R V+ I +E D L G D+L+G L+ + L Sbjct: 26 TTLTKRMAEDLTEYMYEAGLKVRYMHSDVETIERIELIRD-LRLGVYDVLIGINLLREGL 84 Query: 562 SVPEIGLVCIMDVDSLIFNPDYSSSLRTFQLVVQALGRASRGDQGKAII 610 +PE GLV ++D D F LR+ ++Q +GRA+R +G+ I+ Sbjct: 85 DIPECGLVAVLDADKEGF-------LRSETSLIQTIGRAARNAEGRVIL 126Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR Posted date: Jan 12, 2000 2:26 PM Number of letters in database: 136,724,657 Number of sequences in database: 444,417 Lambda K H 0.321 0.140 0.404 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 195264900 Number of Sequences: 444417 Number of extensions: 8392197 Number of successful extensions: 25343 Number of sequences better than 10.0: 143 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 78 Number of HSP's that attempted gapping in prelim test: 25034 Number of HSP's gapped (non-prelim): 266 length of query: 736 length of database: 136,724,657 effective HSP length: 57 effective length of query: 679 effective length of database: 111,392,888 effective search space: 75635770952 effective search space used: 75635770952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.8 bits) S2: 73 (32.8 bits)