Score E
Sequences producing significant alignments: (bits) Value
gb|AAD35270.1|AE001702_10 (AE001702) conserved hypothetical... 529 e-149
gi|2618831 (AF017113) YvjA [Bacillus subtilis] >gi|2636054|... 162 2e-39
dbj|BAA11720| (D83026) homologous to jojC gene product (B. ... 138 6e-32
sp|P39803|YITT_BACSU HYPOTHETICAL 30.5 KD PROTEIN IN IPI 5'... 135 5e-31
emb|CAB01834| (Z79580) putative ORF [Bacillus subtilis] >gi... 134 6e-31
sp|P42978|YPJC_BACSU HYPOTHETICAL 23.6 KD PROTEIN IN QCRC-D... 119 3e-26
gi|2687904 (AE001116) conserved hypothetical integral membr... 117 1e-25
sp|P54478|YQFU_BACSU HYPOTHETICAL 32.5 KD PROTEIN IN CCCA-S... 114 8e-25
gb|AAC67813.1| (AE001295) hypothetical protein [Chlamydia t... 107 1e-22
gb|AAD18412| (AE001611) YqfU hypothetical protein [Chlamydi... 106 2e-22
sp|P55815|YCCA_BACP3 HYPOTHETICAL PROTEIN IN CCCA 5'REGION 102 4e-21
pir||S43727 hypothetical protein - thermophilic bacterium PS-3 102 4e-21
emb|CAA66894| (X98238) orf2 [Lactobacillus sakei] 94 1e-18
dbj|BAA19362| (AB001488) SIMILAR TO YQFU, YXKD, YITB OF B. ... 92 4e-18
emb|CAA70660| (Y09476) YitE [Bacillus subtilis] >gi|2633432... 70 2e-11
gb|AAD33529.2|AF132117_6 (AF132117) unknown [Staphylococcus... 52 6e-06
gi|1916606 (U55381) P-glycoprotein E [Leishmania tropica] 34 1.2
gi|1537070 (U63840) nucleoporin p54 [Rattus norvegicus] 34 2.0
gnl|NCBI_MITO|CYTB_13186 cytochrome b >gi|2735939 (AF015193... 32 7.7
emb|CAB12152| (Z99105) similar to hypothetical proteins fro... 32 7.7
gb|AAD35270.1|AE001702_10 (AE001702) conserved hypothetical protein [Thermotoga maritima]
Length = 283
Score = 529 bits (1347), Expect = e-149
Identities = 271/283 (95%), Positives = 271/283 (95%)
Query: 1 MIEKIKEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVPIPVGVWMYILNG 60
MIEKIKEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVPIPVGVWMYILNG
Sbjct: 1 MIEKIKEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVPIPVGVWMYILNG 60
Query: 61 LLFLIAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIPLPKYTGDDLFLAVFFGTILTASG 120
LLFLIAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIPLPKYTGDDLFLAVFFGTILTASG
Sbjct: 61 LLFLIAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIPLPKYTGDDLFLAVFFGTILTASG 120
Query: 121 LAITFSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGV 180
LAITFSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGV
Sbjct: 121 LAITFSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGV 180
Query: 181 ILNGIMVDFMMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILL 240
ILNGIMVDFMMRG KCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILL
Sbjct: 181 ILNGIMVDFMMRGIEQSSEVIIISEKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILL 240
Query: 241 VVVRRRELNELIRFIKKADPKAFVIIKEVRQALGEGFKELEEL 283
VVVRRRELNELIRFIKKADPKAFVIIKEVRQALGEGFKELEEL
Sbjct: 241 VVVRRRELNELIRFIKKADPKAFVIIKEVRQALGEGFKELEEL 283
gi|2618831 (AF017113) YvjA [Bacillus subtilis] >gi|2636054|emb|CAB15545.1|
(Z99122) similar to hypothetical proteins [Bacillus
subtilis]
Length = 281
Score = 162 bits (407), Expect = 2e-39
Identities = 98/274 (35%), Positives = 146/274 (52%), Gaps = 5/274 (1%)
Query: 5 IKEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVPIPVGVWMYILNGLLFL 64
+++YV +G ITAV VFL+PN IAAGGVSG+S IL S+ +I+N LF+
Sbjct: 11 LRDYVYILIGAAITAVSFNVFLLPNKIAAGGVSGISTILQSY-GFEAAYVQWIINIPLFI 69
Query: 65 IAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIPLPKYTGDDLFLAVFFGTILTASGLAIT 124
+ +G F KT+ + V L I P + LA FG + G+ I
Sbjct: 70 AGVILLGGKFGLKTLAGSVFLPLVVFLTRDIQPATHHE----LLAAIFGGVGIGIGIGIV 125
Query: 125 FSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGVILNG 184
+ STGGT + A+I++KY +S+G L ++D I V A +VF+ G+YA+LGV ++
Sbjct: 126 YLGKGSTGGTALAAQIIHKYSGLSLGKCLAIIDGMIVVTAMIVFNIEQGLYAMLGVYVSS 185
Query: 185 IMVDFMMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILLVVVR 244
+D + G + +K+ VL + RG T I A G YT +R IL+ VV
Sbjct: 186 KTIDVVQVGFNRSKMALIITKQEQAVKEAVLQKIDRGVTKISAVGGYTDDDRPILMCVVG 245
Query: 245 RRELNELIRFIKKADPKAFVIIKEVRQALGEGFK 278
+ E +L + +K+ D AFVI+ + + LGEGFK
Sbjct: 246 QTEFTKLKQIVKQIDESAFVIVADASEVLGEGFK 279
dbj|BAA11720| (D83026) homologous to jojC gene product (B. subtilis;
prf:2111327a); hypothetical [Bacillus subtilis]
>gi|2636419|emb|CAB15910| (Z99123) similar to
hypothetical proteins [Bacillus subtilis]
Length = 278
Score = 138 bits (344), Expect = 6e-32
Identities = 79/283 (27%), Positives = 143/283 (49%), Gaps = 6/283 (2%)
Query: 1 MIEKIKEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVPIPVGVWMYILNG 60
M +++ + ++ +G A+ + +F IPND+ GGV+G+++IL+ GV +ILN
Sbjct: 1 MKKRMLDVLMLVIGAFFFALAVNLFAIPNDLGEGGVTGITLILYYLFQWSPGVTNFILNA 60
Query: 61 LLFLIAFLTIGFDFSAKTIYCTFVFNFFVDLFDR-IIPLPKYTGDDLFLAVFFGTILTAS 119
L LI + + + TI + F+ L IP D+L + F +
Sbjct: 61 FLLLIGYKFLDGKTTVYTIIAVAANSLFLHLTHGWSIP-----SDELIINTIFAGVFAGV 115
Query: 120 GLAITFSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLG 179
G+ + +T G+ ILARI NKY ++ LL D+ + + + A M+ ++
Sbjct: 116 GIGMIIRVGGTTAGSAILARIANKYLDWNISYALLFFDLIVVFSSYFIIGAEKMMFTIVM 175
Query: 180 VILNGIMVDFMMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKIL 239
+ + ++DF++ G +I + V ++ RG T + KG YTG+ ++IL
Sbjct: 176 LYIGTKVMDFIIEGLNTKKAITVISENKSEIAEQVNTLMDRGVTILSGKGNYTGQSKEIL 235
Query: 240 LVVVRRRELNELIRFIKKADPKAFVIIKEVRQALGEGFKELEE 282
+V+ ++EL+ L + I+ D KAFVI+ +VR GEGF ++ +
Sbjct: 236 YIVINKQELSMLKKIIRSCDKKAFVIVHDVRDVFGEGFVDISK 278
sp|P39803|YITT_BACSU HYPOTHETICAL 30.5 KD PROTEIN IN IPI 5'REGION (ORF1)
>gi|625883|pir||A49921 orf1 5' of ipi - Bacillus
subtilis >gi|451201|dbj|BAA03818| (D16311) ORF1
[Bacillus subtilis]
Length = 280
Score = 135 bits (336), Expect = 5e-31
Identities = 80/281 (28%), Positives = 152/281 (53%), Gaps = 14/281 (4%)
Query: 1 MIEKIKEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVP------IPVGVW 54
++++ K+ ++ +G L+ A GL +FLIP D+ A G +G++ +L S V I G
Sbjct: 2 VLDQTKKLLIVIIGALLNAAGLNLFLIPADVYASGFTGVAQLLSSVVDQYAPFYISTGTL 61
Query: 55 MYILNGLLFLIAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIPLPKYT-GDDLFLAVFFG 113
+++LN + ++ +L +G F+ +I + F+ + LP+ + D+ L FG
Sbjct: 62 LFLLNIPVGILGWLKVGKSFTVYSILSVALTTLFMGI------LPETSLSHDILLNAVFG 115
Query: 114 TILTASGLAITFSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTG 173
+++A G+ +T ASTGG DI+A +L K+ +GT +++ I + AGL+
Sbjct: 116 GVISADGIGLTLKYGASTGGLDIVAMVLAKWKDKPVGTYFFILNGIIILTAGLLQGWEKA 175
Query: 174 MYALLGVILNGIMVDFMMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTG 233
+Y L+ + + ++D + K D+IK+ + + RG T +PAKGA+T
Sbjct: 176 LYTLVTLYVTTRVID-AIHTRHMKLTAMIVTKKADEIKEAIYGKMVRGITTLPAKGAFTN 234
Query: 234 KERKILLVVVRRRELNELIRFIKKADPKAFVIIKEVRQALG 274
++++++++V+ R EL +L + +K+ DPKAF I + G
Sbjct: 235 EQKEMMIIVITRYELYDLEKIVKEVDPKAFTNIVQTTGIFG 275
emb|CAB01834| (Z79580) putative ORF [Bacillus subtilis] >gi|2145413|emb|CAA70630|
(Y09476) YitT [Bacillus subtilis]
>gi|2633448|emb|CAB12952| (Z99109) alternate gene name:
yuxA; similar to hypothetical proteins [Bacillus
subtilis]
Length = 280
Score = 134 bits (335), Expect = 6e-31
Identities = 80/281 (28%), Positives = 152/281 (53%), Gaps = 14/281 (4%)
Query: 1 MIEKIKEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVP------IPVGVW 54
++++ K+ ++ +G L+ A GL +FLIP D+ A G +G++ +L S V I G
Sbjct: 2 VLDQTKKLLIVIIGALLNAAGLNLFLIPADVYASGFTGVAQLLSSVVDQYAPFYISTGTL 61
Query: 55 MYILNGLLFLIAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIPLPKYT-GDDLFLAVFFG 113
+++LN + ++ +L +G F+ +I + F+ + LP+ + D+ L FG
Sbjct: 62 LFLLNIPVGILGWLKVGKSFTVYSILSVALTTLFMGI------LPETSLSHDILLNAVFG 115
Query: 114 TILTASGLAITFSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTG 173
+++A G+ +T ASTGG DI+A +L K+ +GT +++ I + AGL+
Sbjct: 116 GVISAVGIGLTLKYGASTGGLDIVAMVLAKWKDKPVGTYFFILNGIIILTAGLLQGWEKA 175
Query: 174 MYALLGVILNGIMVDFMMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTG 233
+Y L+ + + ++D + K D+IK+ + + RG T +PAKGA+T
Sbjct: 176 LYTLVTLYVTTRVID-AIHTRHMKLTAMIVTKKADEIKEAIYGKMVRGITTVPAKGAFTN 234
Query: 234 KERKILLVVVRRRELNELIRFIKKADPKAFVIIKEVRQALG 274
++++++++V+ R EL +L + +K+ DPKAF I + G
Sbjct: 235 EQKEMMIIVITRYELYDLEKIVKEVDPKAFTNIVQTTGIFG 275
sp|P42978|YPJC_BACSU HYPOTHETICAL 23.6 KD PROTEIN IN QCRC-DAPB INTERGENIC REGION
>gi|755601 (L38424) unknown [Bacillus subtilis]
>gi|1146232 (L47709) putative [Bacillus subtilis]
>gi|2634669|emb|CAB14167| (Z99115) alternate gene name:
jojC; similar to hypothetical proteins [Bacillus
subtilis]
Length = 215
Score = 119 bits (295), Expect = 3e-26
Identities = 69/202 (34%), Positives = 104/202 (51%), Gaps = 4/202 (1%)
Query: 78 TIYCTFVFNFFVDLFDRI-IPLPKYTGDDLFLAVFFGTILTASGLAITFSQNASTGGTDI 136
T+ T + F+ +F R I +P DL LA F + +GL I F +TGG DI
Sbjct: 5 TLVGTVALSLFLSIFQRYEIHMPLQ--HDLALAALFAGVFIGAGLGIIFKFGGTTGGVDI 62
Query: 137 LARILNKYFWISMGTGLLMVDVAIAVLAGLVF-SARTGMYALLGVILNGIMVDFMMRGXX 195
+AR++NKYF I MG + D + +L+ L + S + MY L+ V + ++DF+ G
Sbjct: 63 IARLVNKYFGIPMGRTMFAFDACVIILSLLTYLSYKEAMYTLVAVFVAARLIDFIQEGGY 122
Query: 196 XXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILLVVVRRRELNELIRFI 255
K D I+ +L ++RG T + +G+YT ++ +L VV + EL L I
Sbjct: 123 AAKGATIISSKNDLIQKKILEEMERGVTILKGQGSYTKEDIDVLYCVVPKNELVMLKSVI 182
Query: 256 KKADPKAFVIIKEVRQALGEGF 277
DP AFV + +V LGEGF
Sbjct: 183 NSIDPHAFVAVSDVHDVLGEGF 204
gi|2687904 (AE001116) conserved hypothetical integral membrane protein
[Borrelia burgdorferi]
Length = 319
Score = 117 bits (290), Expect = 1e-25
Identities = 68/263 (25%), Positives = 130/263 (48%), Gaps = 2/263 (0%)
Query: 12 TLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVPIPVGVWMYILNGLLFLIAFLTIG 71
TLG+ + A+ V IP+ + +GG+ G+S++LH + +G ++ LN LFLI +
Sbjct: 45 TLGSALMAISTNVLYIPHGLLSGGIGGISLMLHYLLSFNLGWTIFALNIPLFLIGIKFLN 104
Query: 72 FDFSAKTIYCTFVFNFFVDLFDRIIPLPKYTGDDLFLAVFFGTILTASGLAITFSQNAST 131
F ++ +++ ++ + + + D + +++ G +++ GL + F S+
Sbjct: 105 LTFIIQSWISMGLYSIIIN-HSQFLQNKIHLNDMMLVSILAG-LISGLGLGLIFKGKGSS 162
Query: 132 GGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGVILNGIMVDFMM 191
GG+DI+A I+ + + IS+GT +V++ + +LA F+ +Y L+ + IM D
Sbjct: 163 GGSDIIAMIIKEKYSISIGTTNFVVNLVVLILATFFFNIEIALYTLIASFVTSIMTDKTS 222
Query: 192 RGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILLVVVRRRELNEL 251
G K +I + N L+ AT I KGA+ G E+ I+ +VV L+ +
Sbjct: 223 TGFGNQKAILIISDKGKEIAYLLTNKLKLAATLIDGKGAWAGTEKTIVFIVVPIMRLSRI 282
Query: 252 IRFIKKADPKAFVIIKEVRQALG 274
+K DP F+ + + G
Sbjct: 283 KYISQKVDPNCFITVINTNEITG 305
sp|P54478|YQFU_BACSU HYPOTHETICAL 32.5 KD PROTEIN IN CCCA-SODA INTERGENIC REGION
>gi|1303842|dbj|BAA12498| (D84432) YqfU [Bacillus
subtilis] >gi|2634944|emb|CAB14441| (Z99116) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 293
Score = 114 bits (283), Expect = 8e-25
Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 4/268 (1%)
Query: 13 LGTLITAVGLVVFLIPNDIAAGGVSGLSIIL-HSFVPIPVGVWMYILNGLLFLIAFLTIG 71
+G AV + +FLIPND GG+ G+S+IL H F+ P + + ++ I F+ G
Sbjct: 24 VGAASAAVSIELFLIPNDFIDGGIIGVSLILDHLFMSNPF--LNFAFSVVILNIPFMIFG 81
Query: 72 FDFSAKT-IYCTFVFNFFVDLFDRIIPLPKYTGDDLFLAVFFGTILTASGLAITFSQNAS 130
+ + KT + TF+ + + + + + LA FG +L G+ + S
Sbjct: 82 YKYIGKTFLVSTFIGIVGLAVIESSLHHVEAITTQPILATVFGGLLLGFGVGLVIRNGGS 141
Query: 131 TGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGVILNGIMVDFM 190
GT+IL +L K S+G ++ ++V I + A VF MY+ + + +D +
Sbjct: 142 MDGTEILGILLTKKLPFSVGEFVMFINVFIFIWAVFVFGPEQAMYSFMTYYIAMKTIDAV 201
Query: 191 MRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILLVVVRRRELNE 250
++G + D+I D +L+ L RG T + KG YT +E+ ++ VV R E+ +
Sbjct: 202 IQGLDETKAVIIVSEQYDEISDAILHRLGRGTTKLKGKGGYTDEEKDVIYAVVTRLEVTK 261
Query: 251 LIRFIKKADPKAFVIIKEVRQALGEGFK 278
L + + D AF+ I + G FK
Sbjct: 262 LKSIVFEVDQNAFITIMNTHETRGGKFK 289
gb|AAC67813.1| (AE001295) hypothetical protein [Chlamydia trachomatis]
Length = 298
Score = 107 bits (265), Expect = 1e-22
Identities = 71/272 (26%), Positives = 136/272 (49%), Gaps = 12/272 (4%)
Query: 13 LGTLITAVGLVVFLIPNDIAAGGVSGLSIIL-HSFVPIPVGVWMYILNGLLFLIAFLTIG 71
+G + A G+ + L PND+ GG+ GLS+I HSF + V++ + N ++A+ IG
Sbjct: 25 IGGFLAACGVHMILAPNDLIDGGIVGLSMIAAHSFGHQFLPVFLVLFNLPFIILAYKRIG 84
Query: 72 FDFSAKTIYCTFVFNFFVDLFDRIIPLPKYTGDDLFL-------AVFFGTILTASGLAIT 124
F + I +F+ ++ L + LP++ G F+ + G ++ +G +
Sbjct: 85 KYFVVQMITAVIIFSCWLWLIE---VLPEWLGIQPFIFDGSEIETIVLGGVVLGAGGGLI 141
Query: 125 FSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVF-SARTGMYALLGVILN 183
+T GT+IL I+NK ++G +L V+ I L G+V+ + T +LL +
Sbjct: 142 IRHGGATDGTEILGIIVNKKRGYTVGQVILFVNFFIFSLGGIVYRNWHTAFMSLLTYAVA 201
Query: 184 GIMVDFMMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILLVVV 243
++D ++ G + + ++ L G TY+ A+G ++G+ R +L +VV
Sbjct: 202 IKVMDMVILGFEDTKSVTIITSSPRKLGNILMETLGVGLTYLHAEGGFSGEPRSLLYIVV 261
Query: 244 RRRELNELIRFIKKADPKAFVIIKEVRQALGE 275
R +L++L + + DP AF+ I+ + + + E
Sbjct: 262 ERLQLSQLKEIVHREDPSAFIAIENLHEVINE 293
gb|AAD18412| (AE001611) YqfU hypothetical protein [Chlamydia pneumoniae]
Length = 296
Score = 106 bits (262), Expect = 2e-22
Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 12/270 (4%)
Query: 13 LGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVPIPVGVWMYILNGLLFL-IAFLTIG 71
LG + A G+ + L+PN++ GG+ GLSII F+ + +L L F+ +AF IG
Sbjct: 25 LGGFLAACGVQMVLVPNELIDGGIVGLSIIASHFLGHKALPFCLVLFNLPFVFLAFKQIG 84
Query: 72 FDFSAKTIYCTFVFNFFVDLFDRIIPLPKYTGDDLFL-------AVFFGTILTASGLAIT 124
F + + +F+ + L D+ LP + G F+ V G + G +
Sbjct: 85 KYFVIQMLTAVIIFSCSLWLIDQ---LPSWLGMSPFVFKGSEMETVVLGGAIIGVGCGLI 141
Query: 125 FSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSA-RTGMYALLGVILN 183
ST GT+IL I+NK ++G +L V+ I L+G+V+ T + L +
Sbjct: 142 IRHGGSTDGTEILGIIINKKKGYTVGQIILFVNFFIFALSGIVYKNWHTAFVSFLTYGIA 201
Query: 184 GIMVDFMMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILLVVV 243
++D ++ G + ++ L G TYI A+G Y+G+ R +L VVV
Sbjct: 202 TKVMDMVILGLEDTKSVTIITSSPRKLGHILMETLGIGLTYIHAEGGYSGEPRNLLYVVV 261
Query: 244 RRRELNELIRFIKKADPKAFVIIKEVRQAL 273
R +L++L + + DP AF+ I+ + + +
Sbjct: 262 ERLQLSQLKEIVHREDPSAFIAIENLHEVI 291
sp|P55815|YCCA_BACP3 HYPOTHETICAL PROTEIN IN CCCA 5'REGION
Length = 150
Score = 102 bits (252), Expect = 4e-21
Identities = 49/149 (32%), Positives = 84/149 (55%)
Query: 130 STGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGVILNGIMVDF 189
STGGTD+ A+I++KY +S+G ++++D I + A VF +YAL+ + + +D
Sbjct: 1 STGGTDLAAQIIHKYTGLSLGMCVILIDGLIVLTAAFVFDIERALYALIALYVTSKTIDL 60
Query: 190 MMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILLVVVRRRELN 249
+ G + + ++ +L+ + RG T +PA G YT ER +L+ VV + E
Sbjct: 61 VQVGLGYSKIALIITNEEEKVRRAILHEIDRGVTRLPAYGGYTEHERPVLMCVVAQSEFT 120
Query: 250 ELIRFIKKADPKAFVIIKEVRQALGEGFK 278
+L + ++ DP AFVI+ + LGEGF+
Sbjct: 121 KLKQLVRTIDPTAFVIVANAAEVLGEGFQ 149
pir||S43727 hypothetical protein - thermophilic bacterium PS-3
Length = 151
Score = 102 bits (252), Expect = 4e-21
Identities = 49/149 (32%), Positives = 84/149 (55%)
Query: 130 STGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGVILNGIMVDF 189
STGGTD+ A+I++KY +S+G ++++D I + A VF +YAL+ + + +D
Sbjct: 1 STGGTDLAAQIIHKYTGLSLGMCVILIDGLIVLTAAFVFDIERALYALIALYVTSKTIDL 60
Query: 190 MMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILLVVVRRRELN 249
+ G + + ++ +L+ + RG T +PA G YT ER +L+ VV + E
Sbjct: 61 VQVGLGYSKIALIITNEEEKVRRAILHEIDRGVTRLPAYGGYTEHERPVLMCVVAQSEFT 120
Query: 250 ELIRFIKKADPKAFVIIKEVRQALGEGFK 278
+L + ++ DP AFVI+ + LGEGF+
Sbjct: 121 KLKQLVRTIDPTAFVIVANAAEVLGEGFQ 149
emb|CAA66894| (X98238) orf2 [Lactobacillus sakei]
Length = 283
Score = 94.0 bits (230), Expect = 1e-18
Identities = 66/275 (24%), Positives = 129/275 (46%), Gaps = 12/275 (4%)
Query: 6 KEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVP-----IPVGVWMYILNG 60
K V++ + + AV + +FLIP + GV+G++ +L + V + V ++ILN
Sbjct: 9 KRIVIAMVYGFLAAVSVNLFLIPAKTYSSGVTGVAQLLTALVSHLGGSLSVAALVFILNV 68
Query: 61 LLFLIAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIPLP-KYTGDDLFLAVFFGTILTAS 119
L ++A+ I ++ +I F F+ +IIP+P + + F FG L
Sbjct: 69 PLLVLAWFKINHQYAIFSIVAVFTSVIFL----KIIPVPVQPILTERFAGALFGGALIGL 124
Query: 120 GLAITFSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLG 179
G+ + F STGGTD++ ++ + +G +++ I + AG+ F +Y+++
Sbjct: 125 GVGLCFRAGFSTGGTDVIVTLVGRLTGKRVGAVNNVINGMIILAAGIFFGWGAALYSIVE 184
Query: 180 VILNGIMVDFMMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKIL 239
+ ++ +++D++ K + + GAT + G YT +E ++
Sbjct: 185 IFVSSLLMDYIY--TQQQKVTVTIFTKQPEALKKRMREFIHGATELDGTGLYTNQETSVI 242
Query: 240 LVVVRRRELNELIRFIKKADPKAFVIIKEVRQALG 274
+ VV + +L L ++ ADP AFV I+ G
Sbjct: 243 MTVVSKYDLTALKLVVQDADPNAFVNIQSTMNLWG 277
dbj|BAA19362| (AB001488) SIMILAR TO YQFU, YXKD, YITB OF B. SUBTILIS. [Bacillus
subtilis] >gi|2632828|emb|CAB12335| (Z99106) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 290
Score = 92.4 bits (226), Expect = 4e-18
Identities = 61/276 (22%), Positives = 120/276 (43%), Gaps = 3/276 (1%)
Query: 5 IKEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVPIPVGVWMYILNGLLFL 64
I + ++ +G +I A GL LIPN ++ GGV+GLSI+ +P+G+ + ++N
Sbjct: 15 ILQIIMVIIGGIIAAYGLETVLIPNSVSDGGVTGLSIVGSQLFNLPLGILIAVINIPFVW 74
Query: 65 IAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIPLPKYTGDDLFLAVFFGTILTASGLAIT 124
+ + IG F+ +I F P D L G I+ G+ +
Sbjct: 75 LGYKQIGKSFALLSIIGIVSLAAGTSFFHH---TPAIIEGDTLLITVVGGIILGFGMGLA 131
Query: 125 FSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGVILNG 184
+ G D+LA +L++ +L +++ + + VF + + +++ +
Sbjct: 132 LRNGGALDGIDMLAVLLSRKLPFGTSDLILFLNLFVFIFVSTVFGLQGALLSVIAYYIAS 191
Query: 185 IMVDFMMRGXXXXXXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERKILLVVVR 244
++ + G + + + + + + L R ATY A G ++ ++ K + V+
Sbjct: 192 KVIHVVEEGLSGSKTFQIITTQPELMVETIRDQLGRSATYKEAYGGFSHEKFKEITCVIN 251
Query: 245 RRELNELIRFIKKADPKAFVIIKEVRQALGEGFKEL 280
R E +L I D AFV + +V + G F+ L
Sbjct: 252 RLEETKLKEIINDIDKTAFVTVYDVAEVKGSNFRNL 287
emb|CAA70660| (Y09476) YitE [Bacillus subtilis] >gi|2633432|emb|CAB12936|
(Z99109) similar to hypothetical proteins from B.
subtilis [Bacillus subtilis]
Length = 209
Score = 70.2 bits (169), Expect = 2e-11
Identities = 45/190 (23%), Positives = 94/190 (48%), Gaps = 3/190 (1%)
Query: 1 MIEKIKEYVLSTLGTLITAVGLVVFLIPNDIAAGGVSGLSIILHSFVPIPVGVWMYILNG 60
++ K K + +G ++ +G+ +FL P+DI GG +G++++LH IP G ++ +N
Sbjct: 4 LLMKAKLTFMIVVGGVLQGLGMSLFLFPHDIPTGGAAGIAVLLHYLFQIPHGFSVWAVNV 63
Query: 61 LLFLIAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIPLPKYTGDDLFLAVFFGTILTASG 120
+ A + T+ V + V +FD + P +L+L + G +L G
Sbjct: 64 SMLFTALKWLEMRTFTGTLASITVTSVSVLIFDAVFP---DITSNLWLDLASGAVLLGLG 120
Query: 121 LAITFSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGV 180
+ + + S GG LA +++ Y + GT LL+++ I ++ + + AL+
Sbjct: 121 IGLLYKYKISNGGFGALALMISIYRGGNPGTILLIMNCIIFMVTASIIDWGIVIQALICQ 180
Query: 181 ILNGIMVDFM 190
+++ ++DF+
Sbjct: 181 VISTRVIDFI 190
gb|AAD33529.2|AF132117_6 (AF132117) unknown [Staphylococcus aureus]
Length = 175
Score = 51.9 bits (122), Expect = 6e-06
Identities = 35/160 (21%), Positives = 69/160 (42%), Gaps = 4/160 (2%)
Query: 78 TIYCTFVFNFFVDLFDRIIPLPKYTGDDLFLAVFFGTILTASGLAITFSQNASTGGTDIL 137
TI T + + F+ L + TG+ + A+F G + G+ + +T GT IL
Sbjct: 4 TILVTILISIFLSLTES---WQVETGNSIVNAIF-GGVSVGLGIGVIILAGGTTAGTTIL 59
Query: 138 ARILNKYFWISMGTGLLMVDVAIAVLAGLVFSARTGMYALLGVILNGIMVDFMMRGXXXX 197
ARI KY +S LL D+ + ++ V + ++ + + ++++++ G
Sbjct: 60 ARIATKYLDVSTPYALLFFDMIVVAISLTVIPLDKVLVTVISLYIGTKVMEYVIEGLNTK 119
Query: 198 XXXXXXXXKCDDIKDFVLNVLQRGATYIPAKGAYTGKERK 237
D + + + RG T + G YT +E++
Sbjct: 120 KAMTIISTNPDKLAKAIDEQIGRGLTILNGHGYYTREEKE 159
gi|1916606 (U55381) P-glycoprotein E [Leishmania tropica]
Length = 1677
Score = 34.4 bits (77), Expect = 1.2
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 2 IEKIKEYVLSTLGTLITAVGLVVFLI---PNDIAAGGVSGLSIILHSFVPIPVGVWMYIL 58
IEK++ LS L L A+ +V F P + A S+ H+ P V + +
Sbjct: 525 IEKLRSVELSHLKKLQQAIMMVFFQFNATPGFVIASVFFTFSVTGHTLTPTIVFPAIALF 584
Query: 59 NGLLFLIAFLTIGFDFSAKTIYCTFVFNFFVDLFDRIIP 97
N L+ L++ L + K N F D D ++P
Sbjct: 585 NLLMGLVSMLRLALQLMTKLFVSLRRLNMFFDADDELVP 623
gi|1537070 (U63840) nucleoporin p54 [Rattus norvegicus]
Length = 510
Score = 33.6 bits (75), Expect = 2.0
Identities = 17/41 (41%), Positives = 21/41 (50%)
Query: 112 FGTILTASGLAITFSQNASTGGTDILARILNKYFWISMGTG 152
FGT T +G A +FS +TG T +L NK F G G
Sbjct: 28 FGTTTTTAGSAFSFSAPTNTGSTGLLGGTQNKGFGFGTGFG 68
gnl|NCBI_MITO|CYTB_13186 cytochrome b >gi|2735939 (AF015193) cytochrome b [Onchocerca
volvulus]
Length = 360
Score = 31.7 bits (70), Expect = 7.7
Identities = 34/144 (23%), Positives = 62/144 (42%), Gaps = 37/144 (25%)
Query: 55 MYILNGLLFLIAFLTIGFDFSAKTIYCTFVFN-----FFVDLFDRIIPLPKYTGDDLFLA 109
M I N L+FL A T+ + ++ ++ + + FF+ + YT + F +
Sbjct: 1 MAIFNSLVFLPASFTLSYMWNFGSMLGIMLMSQILTGFFLTFY--------YTAGEAFSS 52
Query: 110 VFFGTILTASGLAITFSQNASTGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFS 169
V + I F N L RI++ S G + + + + + GL++
Sbjct: 53 VQY----------IMFEVNLGW-----LLRIMH-----SNGASMFFLFIYLHIFKGLIY- 91
Query: 170 ARTGMYALLGVILNGIMVDFMMRG 193
G Y L+GV L+GI + F++ G
Sbjct: 92 ---GSYRLIGVWLSGIFIYFLLMG 112
emb|CAB12152| (Z99105) similar to hypothetical proteins from B. subtilis
[Bacillus subtilis] >gi|2632659|emb|CAB12166| (Z99106)
similar to hypothetical proteins from B. subtilis
[Bacillus subtilis]
Length = 215
Score = 31.7 bits (70), Expect = 7.7
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 111 FFGTILTASGLAITFSQNA-STGGTDILARILNKYFWISMGTGLLMVDVAIAVLAGLVFS 169
F G I+ A G+++T A D L ++F +++G +++ I L
Sbjct: 13 FAGLIILAFGVSLTIEGKALGISPWDAFHYSLFQHFGLTVGQWSIIIGALIVGFTSLFTR 72
Query: 170 ARTGMYALLGVILNGIMVDF 189
A + ALL ++L G+ +DF
Sbjct: 73 AWPKIGALLNMVLIGVFIDF 92
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.330 0.148 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68465965
Number of Sequences: 444417
Number of extensions: 2733217
Number of successful extensions: 8620
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8579
Number of HSP's gapped (non-prelim): 25
length of query: 283
length of database: 136,724,657
effective HSP length: 51
effective length of query: 232
effective length of database: 114,059,390
effective search space: 26461778480
effective search space used: 26461778480
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 70 (31.7 bits)
