Score E
Sequences producing significant alignments: (bits) Value
gb|AAD35269.1|AE001702_9 (AE001702) conserved hypothetical ... 587 e-167
gi|2983423 (AE000712) hypothetical protein [Aquifex aeolicus] 170 1e-41
gi|2622876 (AE000930) conserved protein [Methanobacterium t... 162 4e-39
sp|Q57655|Y202_METJA HYPOTHETICAL PROTEIN MJ0202 >gi|212817... 153 1e-36
dbj|BAA30687| (AP000006) 287aa long hypothetical protein [P... 150 1e-35
emb|CAB49508.1| (AJ248284) hypothetical protein [Pyrococcus... 145 3e-34
gi|2649480 (AE001027) conserved hypothetical protein [Archa... 137 1e-31
sp|Q58516|ASNH_METJA PUTATIVE ASPARAGINE SYNTHETASE [GLUTAM... 38 0.079
pir||C64439 asparagine synthetase (EC 6.3.-.-) - Methanococ... 38 0.079
emb|CAB50396.1| (AJ248287) PUTATIVE FLAGELLA-RELATED PROTEI... 38 0.10
emb|CAB49126.1| (AJ248283) hypothetical protein [Pyrococcus... 33 2.6
emb|CAA97417.1| (Z73102) cDNA EST EMBL:T00057 comes from th... 33 3.5
gi|2983748 (AE000734) hypothetical protein [Aquifex aeolicus] 32 4.5
gi|2983693 (AE000731) ferrous iron transport protein B [Aqu... 32 4.5
emb|CAA16972| (AL021811) putative protein [Arabidopsis thal... 32 4.5
sp|P31353|PMM_CANAL PHOSPHOMANNOMUTASE (PMM) >gi|170897 (M9... 32 4.5
sp|P44680|YOAA_HAEIN PROBABLE ATP-DEPENDENT HELICASE HI0387... 32 5.9
sp|Q04777|ALDC_BACSU ALPHA-ACETOLACTATE DECARBOXYLASE >gi|5... 32 5.9
gb|AAD35269.1|AE001702_9 (AE001702) conserved hypothetical protein [Thermotoga maritima]
Length = 293
Score = 587 bits (1498), Expect = e-167
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MRYLRADERCLICSLRQAENLLKKTITSPEKRWVIFREVFRIMSEMKWGMKPLEVNGEVH 60
MRYLRADERCLICSLRQAENLLKKTITSPEKRWVIFREVFRIMSEMKWGMKPLEVNGEVH
Sbjct: 1 MRYLRADERCLICSLRQAENLLKKTITSPEKRWVIFREVFRIMSEMKWGMKPLEVNGEVH 60
Query: 61 RFIMEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAVSGNLIDLGIP 120
RFIMEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAVSGNLIDLGIP
Sbjct: 61 RFIMEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAVSGNLIDLGIP 120
Query: 121 GWSVDEIFEKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKME 180
GWSVDEIFEKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKME
Sbjct: 121 GWSVDEIFEKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKME 180
Query: 181 NPSLEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFE 240
NPSLEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFE
Sbjct: 181 NPSLEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFE 240
Query: 241 FDVVISKGQGNFEGLYEEEKKNLFFLLTAKCDFVAEVLNVPLGGKVFISSSSL 293
FDVVISKGQGNFEGLYEEEKKNLFFLLTAKCDFVAEVLNVPLGGKVFISSSSL
Sbjct: 241 FDVVISKGQGNFEGLYEEEKKNLFFLLTAKCDFVAEVLNVPLGGKVFISSSSL 293
gi|2983423 (AE000712) hypothetical protein [Aquifex aeolicus]
Length = 283
Score = 170 bits (427), Expect = 1e-41
Identities = 102/285 (35%), Positives = 155/285 (53%), Gaps = 10/285 (3%)
Query: 4 LRADERCLICSLRQAENLLKKTITSPEKRWVIFREVFRIMSEMK-WGMKPLEVNGEVHRF 62
+RA C+ C + Q N +KK EK I + +S+ + P + +
Sbjct: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI 60
Query: 63 IMEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAVSGNLIDLGIPGW 122
+ E EEDPFK+ K+ +N+ A +L+ ++L + A KL+ GN ID I G
Sbjct: 61 VKEISGEEDPFKDLKKLANEKAQELLS----KVLKGTPDLKEALKLSAIGNFIDFAIKG- 115
Query: 123 SVDEIFEKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKMENP 182
V ++ +L ++ ++ F D++KF L NA ++F + DNAGEIVFDK ++ LK
Sbjct: 116 -VFDLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLK--GM 172
Query: 183 SLEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFEFD 242
EVV V+GKPI+NDAT+EDA+ + + + VI +G D+ G L+ EF + F+ D
Sbjct: 173 GKEVVYGVKGKPILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSD 232
Query: 243 VVISKGQGNFEGLYEEEKKNLFFLLTAKCDFVAEVLNVPLGGKVF 287
+VISKGQ NFE L + ++LFFLL AKCD + G +F
Sbjct: 233 IVISKGQANFETLSSAD-RDLFFLLVAKCDPIGRETGGKRGELIF 276
gi|2622876 (AE000930) conserved protein [Methanobacterium thermoautotrophicum]
Length = 286
Score = 162 bits (405), Expect = 4e-39
Identities = 96/282 (34%), Positives = 150/282 (53%), Gaps = 7/282 (2%)
Query: 10 CLICSLRQAENLLKKTITSPEKRWVIFREVFRIMSE-MKWGMKPLEVNGEVHRFIMEYIK 68
C C LRQA + E + + + ++SE + G E+ +HR I +
Sbjct: 7 CAPCFLRQAREAIDLATDDEELKLRVMENILELLSERFRRGQVSNELGTRMHRLIKDMTG 66
Query: 69 EEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAVSGNLIDLGIPGWSVDEIF 128
EDP+ +EKRR N++A++ + R + L + S K+A++GN+ID G G D
Sbjct: 67 SEDPYLDEKRRCNEIALRFLPTVR-DYLECHSDLESHVKVAITGNIIDFGALGLDFDHD- 124
Query: 129 EKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKMENPSLEVVV 188
+ E P + L AS + Y+ DN GEI+FD+ IE K+ + V V
Sbjct: 125 RGIQESLRAPLTINHVPLLEDRLREASEVLYLLDNTGEILFDRPLIE--KLAGYDVSVKV 182
Query: 189 AVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFEFDVVISKG 248
AV+G+PI+NDA +EDA GL+E+A ++++G D G++ S+EFR ++VI+KG
Sbjct: 183 AVKGEPILNDACMEDALEAGLDEVAEIVTTGTDSVGIVYSDLSDEFRDMLDGTELVIAKG 242
Query: 249 QGNFEGLYE--EEKKNLFFLLTAKCDFVAEVLNVPLGGKVFI 288
GN+EGL E + +++F LL AKC +A L V G V +
Sbjct: 243 MGNYEGLTEISDGSRDIFCLLNAKCSAIARDLGVARGDNVAV 284
sp|Q57655|Y202_METJA HYPOTHETICAL PROTEIN MJ0202 >gi|2128176|pir||C64325 hypothetical
protein MJ0202 - Methanococcus jannaschii >gi|1590945
(U67476) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 304
Score = 153 bits (384), Expect = 1e-36
Identities = 91/288 (31%), Positives = 159/288 (54%), Gaps = 13/288 (4%)
Query: 10 CLICSLRQAENLLKKTITSPEKRWVIFREVFRIMSEMKW-GMKPLEVNGEVHRFIMEYIK 68
C IC +RQ + + +++ + + ++ ++ P + VHR++ +
Sbjct: 19 CAICIIRQVVDAANEITDDEREQFRLIKSTMEVIKDVYGESAVPAWMGTVVHRYLKKISN 78
Query: 69 EEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAK---LAVSGNLIDLGIPGWSVD 125
DP+K K ++N +A++ ++ R E+ N+ D + K ++GN+ID G ++
Sbjct: 79 NNDPYKNLKEKANKIALQYLDKVR-EMSNTDDELERLRKKVLATIAGNVIDFGAYSTGIN 137
Query: 126 EIFEKLHEVYERPFDREDFEKFRNVLM--NASTLFYVADNAGEIVFDKFFIEVLKMENPS 183
I + + + ++ K N L N + Y+ DNAGEI+FD+ +E +K +
Sbjct: 138 -IEKLIEDTLNGELKIDNSRKLLNDLKDKNIKKILYICDNAGEIIFDRVLMEEIKKYDK- 195
Query: 184 LEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFEFDV 243
++V V+GKPI+NDAT+EDAK ++EIA VI++G D G++L++ SEEF K F D+
Sbjct: 196 -DIVAVVKGKPILNDATLEDAKIAKIDEIAKVITTGSDIIGIILEECSEEFLKEFESADL 254
Query: 244 VISKGQGNFEGLYEEE---KKNLFFLLTAKCDFVAEVLNVPLGGKVFI 288
+I+KG GN+E L E E K ++++L AKC VAE + V +G V +
Sbjct: 255 IIAKGMGNYESLTEYEDKIDKPIYYILKAKCKPVAENIGVDVGDNVLL 302
dbj|BAA30687| (AP000006) 287aa long hypothetical protein [Pyrococcus horikoshii]
Length = 287
Score = 150 bits (375), Expect = 1e-35
Identities = 93/284 (32%), Positives = 150/284 (52%), Gaps = 6/284 (2%)
Query: 4 LRADERCLICSLRQAENLLKKTITSPE-KRWVIFREVFRIMSEMKWGMKPLEVNGEVHRF 62
++ CL C Q + +++ + +R + + E P +
Sbjct: 1 MKVQYECLTCMANQCQRIVEMATQDMDIRRRAMILAAKLLAKEYNENAIPAIAGSLIFLE 60
Query: 63 IMEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAVSGNLIDLGIPGW 122
+ +++ +DPF E K +S +MA K+ ++ + ++ + A KLA+ GN+ID + G+
Sbjct: 61 LYKFLGNDDPFIEYKLKSEEMARKVADIIKRKLKLDFE---LAVKLAIIGNVIDFSV-GF 116
Query: 123 SVDEIFEKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKMENP 182
S +++ E++ ++ + +D ++ + A + Y+ DN GE FD IE ++ E
Sbjct: 117 SPEDLEEEVEKMLKDKLYIDDSKELFEEVKRAENILYITDNVGEHYFDAILIEKIR-EIS 175
Query: 183 SLEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFEFD 242
+ EV +A + PIINDAT+ED K GLE++ VIS+G GV L S EF +AF + D
Sbjct: 176 NAEVYIAGKEGPIINDATVEDLKRAGLEKLGKVISTGTRIVGVPLKLVSREFMEAFNKAD 235
Query: 243 VVISKGQGNFEGLYEEEKKNLFFLLTAKCDFVAEVLNVPLGGKV 286
V+I+KGQGNFE L E +FFLL AKC VA L VP G V
Sbjct: 236 VIIAKGQGNFETLSEINDSRIFFLLKAKCPAVARELKVPKGALV 279
emb|CAB49508.1| (AJ248284) hypothetical protein [Pyrococcus abyssi]
Length = 287
Score = 145 bits (363), Expect = 3e-34
Identities = 89/290 (30%), Positives = 153/290 (52%), Gaps = 6/290 (2%)
Query: 4 LRADERCLICSLRQAENLLKKTITSPE-KRWVIFREVFRIMSEMKWGMKPLEVNGEVHRF 62
++ CL C Q + + + E ++ +F I E P V
Sbjct: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
Query: 63 IMEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAVSGNLIDLGIPGW 122
+ +++ +DPFK+ K RSN +A +V++ + ++ +A KLA+ GN+ID + G+
Sbjct: 61 LYKFLGNDDPFKKYKERSNAIARDVVKLLKEKL---DIDFKTAVKLAIIGNVIDFSV-GF 116
Query: 123 SVDEIFEKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKMENP 182
S +++ E++ ++ ++ ++ + A ++ Y+ DN GE FD +E +K E
Sbjct: 117 SPEKLEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIK-EVS 175
Query: 183 SLEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFEFD 242
E+ +A + IIND T+ED K G E ++S+G GV ++ S+EFR+ F E D
Sbjct: 176 RAELYIAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEESD 235
Query: 243 VVISKGQGNFEGLYEEEKKNLFFLLTAKCDFVAEVLNVPLGGKVFISSSS 292
++I+KGQGNFE L E + + +FFLL AKC VA L VP G V + +++
Sbjct: 236 IIIAKGQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALVCMRNAT 285
gi|2649480 (AE001027) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 288
Score = 137 bits (341), Expect = 1e-31
Identities = 83/254 (32%), Positives = 146/254 (56%), Gaps = 10/254 (3%)
Query: 38 EVFRIMSEMKWGMKPLEVN--GEVHRFIMEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEI 95
E +I++E + +P+ + +HR + E + EDP+ E K R+N++A +++ + + +
Sbjct: 35 ESLKILAE-NYSSRPINAHLATRIHRRVYEILGVEDPYAEVKARANEVARQVLPLAKEIV 93
Query: 96 LNSPDPVYSAAKLAVSGNLIDLGIPGWSV--DEIFEKLHEVYERPFDREDFEKFRNVLMN 153
S DP +A +++ GN D G+ G V +E + L + D E+ + ++
Sbjct: 94 EGSDDPFKTAVIVSIVGNNFDYGVQGHKVVEEEFRDFLKRKVQEGLKINDTERIKE--LS 151
Query: 154 ASTLFYVADNAGEIVFDKFFIEVLKMENPSLEVVVAVRGKPIINDATIEDAKYIGLEEIA 213
+ + Y+ DNAGEI FD ++ +K L VV RG+PII+DATIEDA+ +++IA
Sbjct: 152 SGKVVYLTDNAGEIFFDTLLMKEIKRRCEKLTAVV--RGRPIISDATIEDARLARVDKIA 209
Query: 214 T-VISSGVDEPGVMLDKASEEFRKAFFEFDVVISKGQGNFEGLYEEEKKNLFFLLTAKCD 272
++++G G+++D+ +E RKA E D++++KG N+E L + K + FLLTAKC+
Sbjct: 210 DELLTNGKGAIGIIMDELPDETRKALEEADLIVAKGMANYECLSDGSLKPIAFLLTAKCE 269
Query: 273 FVAEVLNVPLGGKV 286
VA + V +G V
Sbjct: 270 PVARDIGVNVGDMV 283
sp|Q58516|ASNH_METJA PUTATIVE ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING]
Length = 541
Score = 38.3 bits (87), Expect = 0.079
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 31/191 (16%)
Query: 53 LEVNGEVHRFI--MEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAV 110
L NGE++ +I EY+K+ F+ + N++ I L E E L D Y+ A
Sbjct: 89 LVCNGEIYNYIELREYLKQNHEFRTDS--DNEVIIHLYE---EEKLEELDGDYAFAIYDK 143
Query: 111 SGNLIDLGIPGWSVDEIFEKLHEVY--------------------ERPFDREDFEKFRNV 150
S N++ L + V +F + Y ER D + K + +
Sbjct: 144 SKNVVRLARDMFGVKPLFYVDRDKYFAFASERKALWHLLINIDGCERDLDELN-SKIKTL 202
Query: 151 LMNASTLFYVADNAGEIVFDKFFIEVLKMENPSLEVVVAVRGKPIINDATIEDAKYIGLE 210
N+ ++Y+ DN EI+ +E+ M+ S E + + N + GL+
Sbjct: 203 KPNSQLIYYLDDNRFEIIEGFKKLELNYMKERSYEEAKEYLDRALKNSVL---KRVRGLD 259
Query: 211 EIATVISSGVD 221
++ + S GVD
Sbjct: 260 KVGIICSGGVD 270
pir||C64439 asparagine synthetase (EC 6.3.-.-) - Methanococcus jannaschii
>gi|1591755 (U67554) asparagine synthetase (asnB)
[Methanococcus jannaschii]
Length = 544
Score = 38.3 bits (87), Expect = 0.079
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 31/191 (16%)
Query: 53 LEVNGEVHRFI--MEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAV 110
L NGE++ +I EY+K+ F+ + N++ I L E E L D Y+ A
Sbjct: 92 LVCNGEIYNYIELREYLKQNHEFRTDS--DNEVIIHLYE---EEKLEELDGDYAFAIYDK 146
Query: 111 SGNLIDLGIPGWSVDEIFEKLHEVY--------------------ERPFDREDFEKFRNV 150
S N++ L + V +F + Y ER D + K + +
Sbjct: 147 SKNVVRLARDMFGVKPLFYVDRDKYFAFASERKALWHLLINIDGCERDLDELN-SKIKTL 205
Query: 151 LMNASTLFYVADNAGEIVFDKFFIEVLKMENPSLEVVVAVRGKPIINDATIEDAKYIGLE 210
N+ ++Y+ DN EI+ +E+ M+ S E + + N + GL+
Sbjct: 206 KPNSQLIYYLDDNRFEIIEGFKKLELNYMKERSYEEAKEYLDRALKNSVL---KRVRGLD 262
Query: 211 EIATVISSGVD 221
++ + S GVD
Sbjct: 263 KVGIICSGGVD 273
emb|CAB50396.1| (AJ248287) PUTATIVE FLAGELLA-RELATED PROTEIN D or E [Pyrococcus
abyssi]
Length = 419
Score = 37.9 bits (86), Expect = 0.10
Identities = 42/236 (17%), Positives = 105/236 (43%), Gaps = 29/236 (12%)
Query: 16 RQAENLLKKTITSPEKRWVIFREVFRIMSEMKWGMKPLEVNGEVHRFIMEYIKEEDPFKE 75
+Q + ++K+ + + + + ++ + + E+ G K E++ ++ R + EE F
Sbjct: 44 KQLDEIIKRVLDAYGSQAAKYEQISKRVDEL--GKKLSELSSQLSRLVEAL--EEKKFAV 99
Query: 76 EKRRSNDMAIKLVEMF----------------RPEILNSPDPVYSAAKLAVSGNLIDLGI 119
++++ ++A K VE+ RPEI+ + ++ + ++ I
Sbjct: 100 HEKKAEEIAEKAVEVTEKVSKIEELLEKKPEERPEIVKKLEEIHEKVEA------LEEKI 153
Query: 120 PGWSVDEIFEKLHEVYERPFDREDF--EKFRNVLMNASTLFYVADNAGEIVFDKFFIEVL 177
G ++E +++ E+ E+ E+ E+ + L A E+V ++ +E +
Sbjct: 154 AGEKLEEAKKRVEELEEKIEKGEEVTAEEVSELAEKVEALEEEAKKPEEVVPEEEVVEEV 213
Query: 178 KMENPSLEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEE 233
E P EVV KP + + E+ + + + + V++ ++P ++++A E
Sbjct: 214 IEEKPVEEVVEVEEEKPKVEEVVPEEVEVLEEKPVEEVVTE-EEKPVEVVEEAHPE 268
emb|CAB49126.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 483
Score = 33.2 bits (74), Expect = 2.6
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 128 FEKLHEVYERPFDRED--FEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKMENPSLE 185
F H+ Y +P E+ + +F N ++ S L Y+A +IV F V +EN +
Sbjct: 295 FNSHHDAYYKPRTEEEKLYHRFTNTIVGPSVLVYIAPPLVKIV-GTFGARVTSIENAGDK 353
Query: 186 VVVAVRGKPIIN--DATIEDAKY 206
++VA P DAT D Y
Sbjct: 354 LLVATNTTPNTGALDATPFDTGY 376
emb|CAA97417.1| (Z73102) cDNA EST EMBL:T00057 comes from this gene [Caenorhabditis
elegans]
Length = 283
Score = 32.8 bits (73), Expect = 3.5
Identities = 41/153 (26%), Positives = 71/153 (45%), Gaps = 20/153 (13%)
Query: 19 ENLLKKTI--TSPEKRWVIFREVFRIMSEMKWGMKPLEVNGEVHRFIMEYIKEEDPFKEE 76
EN+ K I T P +RW +++ SE P+ G + K++ FKE
Sbjct: 65 ENMNKMYIKSTDPVERWTSTKDLPTRESEFLHRNDPIWEYGFYEPPVERIPKDKLMFKE- 123
Query: 77 KRRSNDMAIKLVEMFRPEILN---SPDPVYSAAKLAVSGNLIDLGIPGWSVDEIFEKLHE 133
A++ + FR E+L+ SP AA+ V+ +++ + ++D+I+E
Sbjct: 124 -------ALEYLR-FRQELLSDSSSPAQKKQAAEF-VADHVVTSRVNAETLDDIYE---- 170
Query: 134 VYERPFDREDFEKFRNVLMNASTLFYVADNAGE 166
Y RPF+R+D +K N A+ +V N+ E
Sbjct: 171 -YFRPFERKDKQKVVNRHALAALQDHVQGNSDE 202
gi|2983748 (AE000734) hypothetical protein [Aquifex aeolicus]
Length = 764
Score = 32.5 bits (72), Expect = 4.5
Identities = 26/79 (32%), Positives = 38/79 (47%), Gaps = 4/79 (5%)
Query: 139 FDREDFEKFRNVLMNASTLFYVA--DNAGEIVFDKFFIEVLKMENPSLEVVVAVRGKPII 196
++ E+F KF + L Y D E + DK +IE K+ + +L V + G P I
Sbjct: 443 YEGENFRKFLERTYSLKELAYSPQIDEVYEWLKDKGYIEKGKLSDKALFCVRS--GMPPI 500
Query: 197 NDATIEDAKYIGLEEIATV 215
N KY+GLEEI +
Sbjct: 501 NYEEFLRRKYLGLEEIVYI 519
gi|2983693 (AE000731) ferrous iron transport protein B [Aquifex aeolicus]
Length = 689
Score = 32.5 bits (72), Expect = 4.5
Identities = 27/95 (28%), Positives = 39/95 (40%), Gaps = 7/95 (7%)
Query: 185 EVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFEFDVV 244
++ VAV G P + TI L IA + PGV ++K R +E V
Sbjct: 3 KITVAVAGNPNVGKTTI-------LNAIAGTALKVGNWPGVTVEKKEATVRYKDYEIHFV 55
Query: 245 ISKGQGNFEGLYEEEKKNLFFLLTAKCDFVAEVLN 279
G E + E+EK + FL D + VL+
Sbjct: 56 DLPGIYTLEPISEDEKIAVEFLEKGNVDVILTVLD 90
emb|CAA16972| (AL021811) putative protein [Arabidopsis thaliana]
Length = 838
Score = 32.5 bits (72), Expect = 4.5
Identities = 32/173 (18%), Positives = 72/173 (41%), Gaps = 30/173 (17%)
Query: 71 DPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKL------AVSGNLIDLGIPGW-- 122
D ++ K+R N+ ++ ++ P++L D + A+L ++ N+ D G
Sbjct: 608 DAYRSIKQRENEASLAVL----PDLLEELDSMSEEARLLTLIEGVLAANIFDWGSRACVD 663
Query: 123 -----SVDEIFEKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVL 177
++ EI+ +RP+ +DF+ F+ ++ + + G + + F+
Sbjct: 664 LYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGDVI-----LGMLPLAREFL--- 715
Query: 178 KMENPSLEVVVAVRGKPIINDATIEDAKYI--GLEEIATVISSGVDEPGVMLD 228
EVV+ P +ND T + I G + ++ + G+++D
Sbjct: 716 ---RRGTEVVLVANSLPALNDVTAMELPDIVAGAAKHCDILRRAAEMGGLLVD 765
sp|P31353|PMM_CANAL PHOSPHOMANNOMUTASE (PMM) >gi|170897 (M96770) phosphomannomutase
[Candida albicans]
Length = 252
Score = 32.5 bits (72), Expect = 4.5
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 19/127 (14%)
Query: 86 KLVEMFRPEILNSPDPVYSAAKLA---VSGNLIDLGIPGWSVDEIFEKLHEVYER----- 137
K VE P +LN D +S L + L W +E + KL + R
Sbjct: 55 KQVEQLGPNVLNDFDYCFSENGLTAYKLGKELASQSFINWIGNEKYNKLVKFILRYLSDI 114
Query: 138 --PFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKF---------FIEVLKMENPSLEV 186
P R F +FRN ++N S + A ++KF +E LK E P +
Sbjct: 115 DLPIRRGTFIEFRNGMINVSPIGRNASTQERNDYEKFDKQHHIRETMVEALKKEFPDFGL 174
Query: 187 VVAVRGK 193
++ G+
Sbjct: 175 TYSIGGQ 181
sp|P44680|YOAA_HAEIN PROBABLE ATP-DEPENDENT HELICASE HI0387 >gi|1075170|pir||A64065
probable ATP-dependent helicase (dinG) homolog -
Haemophilus influenzae (strain Rd KW20) >gi|1573357
(U32722) ATP-dependent helicase (dinG) [Haemophilus
influenzae Rd]
Length = 640
Score = 32.1 bits (71), Expect = 5.9
Identities = 20/61 (32%), Positives = 32/61 (51%), Gaps = 4/61 (6%)
Query: 227 LDKASEEFRKAFFEFDVVISKG---QGNFEGLYEEEK-KNLFFLLTAKCDFVAEVLNVPL 282
L S+ K +F +++ G +GN+ LY + K F LL K DF++EV+ + L
Sbjct: 274 LGTTSDTLLKVVQDFRLLLGNGSNVRGNWRELYTQSAVKKAFELLQEKIDFLSEVIKLAL 333
Query: 283 G 283
G
Sbjct: 334 G 334
sp|Q04777|ALDC_BACSU ALPHA-ACETOLACTATE DECARBOXYLASE >gi|538916|pir||B47126
acetolactate decarboxylase (EC 4.1.1.5) - Bacillus
subtilis >gi|142471 (L04470) acetolactate decarboxylase
[Bacillus subtilis] >gi|1929341|emb|CAB07786.1| (Z93767)
alpha-acetolactate decarboxylase protein, AlsD [Bacillus
subtilis] >gi|2636125|emb|CAB15617.1| (Z99122)
alpha-acetolactate decarboxylase [Bacillus subtilis]
Length = 255
Score = 32.1 bits (71), Expect = 5.9
Identities = 21/58 (36%), Positives = 32/58 (54%), Gaps = 3/58 (5%)
Query: 141 REDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKM-ENPSLEVVVAVRGKPIIN 197
REDFEK N ++ + LFY G +F K +++ E P + +V AV+ +PI N
Sbjct: 110 REDFEKEINSMLPSRNLFYAIRIDG--LFKKVQTRTVELQEKPYVPMVEAVKTQPIFN 165
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.321 0.140 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78320691
Number of Sequences: 444417
Number of extensions: 3352492
Number of successful extensions: 8569
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8541
Number of HSP's gapped (non-prelim): 20
length of query: 293
length of database: 136,724,657
effective HSP length: 55
effective length of query: 238
effective length of database: 112,281,722
effective search space: 26723049836
effective search space used: 26723049836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 70 (31.7 bits)