Score E
Sequences producing significant alignments: (bits) Value
sp|O67032|RF1_AQUAE PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 545 e-154
sp|P45872|RF1_BACSU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 333 1e-90
sp|P47849|RF1_COXBU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 318 5e-86
gb|AAD36433.1|AE001790_5 (AE001790) peptide chain release f... 306 2e-82
sp|P55998|RF1_HELPY PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 304 6e-82
sp|O51214|RF1_BORBU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 304 8e-82
gi|4154581 (AE001446) PEPTIDE CHAIN RELEASE FACTOR 1 [Helic... 303 2e-81
sp|P43917|RF1_HAEIN PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 300 9e-81
sp|O83090|RF1_TREPA PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 297 1e-79
pir||I83569 peptide chain release factor 1 - Escherichia co... 293 2e-78
sp|P07011|RF1_ECOLI PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 292 3e-78
sp|P13654|RF1_SALTY PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 292 3e-78
gi|147567 (M11519) peptide chain release factor 1 [Escheric... 290 1e-77
sp|Q9ZD21|RF1_RICPR PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 288 4e-77
sp|P96077|RF1_THETH PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 287 9e-77
sp|P71496|RF1_MYCCA PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 282 3e-75
sp|P74707|RF1_SYNY3 PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 272 2e-72
sp|Q9Z968|RF1_CHLPN PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 267 8e-71
gb|AAC67613.1| (AE001277) Peptide Chain Releasing Factor (R... 259 2e-68
sp|P47500|RF1_MYCGE PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 257 9e-68
gb|AAC34223.1| (AC004411) putative peptide chain release fa... 254 8e-67
sp|P75420|RF1_MYCPN PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 252 4e-66
pir||FCECR1 translation releasing factor RF-1 - Escherichia... 247 8e-65
sp|Q10605|RF1_MYCTU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 240 2e-62
sp|P45833|RF1_MYCLE PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 232 3e-60
gb|AAF10553.1|AE001950_5 (AE001950) peptide chain release f... 222 3e-57
sp|P41767|RF1M_KLULA MITOCHONDRIAL PEPTIDE CHAIN RELEASE FA... 222 4e-57
ref|NP_011372.1|MRF1| Mitochondrial polypeptide chain relea... 222 4e-57
sp|Q09691|RF1M_SCHPO PUTATIVE MITOCHONDRIAL PEPTIDE CHAIN R... 213 1e-54
ref|NP_004285.1|| mitochondrial translational release facto... 206 2e-52
gb|AAD36646.1|AE001802_15 (AE001802) peptide chain release ... 192 4e-48
sp|O67695|RF2_AQUAE PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 191 8e-48
emb|CAA60204| (X86479) prfA [Clostridium perfringens] 186 3e-46
sp|P28367|RF2_BACSU PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 183 1e-45
sp|O44568|RF1M_CAEEL PROBABLE MITOCHONDRIAL PEPTIDE CHAIN R... 180 2e-44
gi|4154673 (AE001454) PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2)... 176 2e-43
sp|P55999|RF2_HELPY PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 175 5e-43
pir||FCECR2 translation releasing factor RF-2 - Escherichia... 175 5e-43
sp|P07012|RF2_ECOLI PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 174 1e-42
sp|P28353|RF2_SALTY PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 173 2e-42
gi|887841 (U28375) peptide chain release factor 2 (RF-2) [E... 171 6e-42
gb|AAF13494.1|AF130466_1 (AF130466) peptide chain release f... 168 5e-41
pir||JN0146 hypothetical protein (div+ 3' region) - Bacillu... 168 7e-41
sp|P43918|RF2_HAEIN PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) 166 3e-40
sp|O51101|RF2_BORBU PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 162 3e-39
gb|AAC68059.1| (AE001320) Peptide Chain Release Factor 2 [C... 158 7e-38
sp|P96314|RF2_BACFI PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 152 3e-36
sp|Q53915|RF2_STRCO PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 149 3e-35
sp|O83585|RF2_TREPA PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 149 4e-35
sp|Q9ZDQ2|RF2_RICPR PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 146 2e-34
dbj|BAA18577| (D90915) peptide chain release factor [Synech... 145 5e-34
gi|407639 (U01800) unknown [Mycoplasma genitalium] 136 2e-31
sp|O32885|RF2_MYCLE PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 133 2e-30
sp|O05782|RF2_MYCTU PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >... 133 2e-30
pir||A31838 translation releasing factor RF-1 - Escherichia... 80 2e-14
gi|1552804 (U70214) PrfH [Escherichia coli] >gi|1786431 (AE... 63 3e-09
sp|P28369|RFH_ECOLI PEPTIDE CHAIN RELEASE FACTOR HOMOLOG (R... 63 3e-09
ref|NP_013383.1|YLR281C| Ylr281cp >gi|1077341|pir||S50367 h... 51 2e-05
emb|CAB62874.1| (AL035475) hypothetical protein, MAL4P2.33 ... 49 5e-05
sp|P40711|YAEJ_ECOLI HYPOTHETICAL 15.6 KD PROTEIN IN MESJ-C... 44 0.002
dbj|BAA77867.1| (D83536) Hypothetical 15.6 kd protein in me... 42 0.007
gi|619672 (U18345) ORF140 [Escherichia coli] 39 0.043
dbj|BAA31617| (AB014542) KIAA0642 protein [Homo sapiens] 38 0.17
sp|P42806|RF1_PSEAE PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >... 36 0.37
gi|1373144 (U44914) ErpD [Borrelia burgdorferi] 35 0.84
gi|146340 (J03795) peptide-chain-release factor 2 [Escheric... 35 1.1
gi|2984136 (AE000759) hypothetical protein [Aquifex aeolicus] 34 1.9
emb|CAB51811.1| (AJ244021) kinesin-II homologue [Tetrahymen... 34 2.5
gi|2330003 (U90567) glutamine rich protein [Gallus gallus] 33 3.2
ref|NP_006346.1|| Ro/SSA ribonucleoprotein homolog >gi|2062... 33 3.2
emb|CAB63523.1| (AL133504) BACH7M4.l [Drosophila melanogaster] 32 7.3
gb|AAD24480.1|AF134401_1 (AF134401) putative espin [Homo sa... 32 7.3
gb|AAD12213.1| (AC006135) putative vicilin storage protein ... 32 7.3
sp|P05693|LEGK_PEA LEGUMIN K >gi|81914|pir||S00337 legumin ... 32 9.5
pir||S26688 legumin K - garden pea 32 9.5
sp|O67032|RF1_AQUAE PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|2983407 (AE000711)
peptide chain release factor RF-1 [Aquifex aeolicus]
Length = 362
Score = 545 bits (1390), Expect = e-154
Identities = 285/348 (81%), Positives = 285/348 (81%)
Query: 1 MLKEAYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXX 60
MLKEAYISRLDKLQEKYRKLQEELSKPEVIQDV QEINELYERY
Sbjct: 1 MLKEAYISRLDKLQEKYRKLQEELSKPEVIQDVEKYKKLSKELKELQEINELYERYKKAQ 60
Query: 61 XXXXXXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXX 120
SSDKDLRELAEEEVNR VHLVPKDPNDTKNV
Sbjct: 61 KELKEAKELLKSSDKDLRELAEEEVNRLTEEMKKLEEELKVHLVPKDPNDTKNVILEIRA 120
Query: 121 XXXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKY 180
MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKY
Sbjct: 121 GAGGEEAALFAADLFRMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKY 180
Query: 181 ESGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVN 240
ESGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVN
Sbjct: 181 ESGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVN 240
Query: 241 TTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQV 300
TTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQV
Sbjct: 241 TTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQV 300
Query: 301 GTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDALRA 348
GTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDALRA
Sbjct: 301 GTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDALRA 348
sp|P45872|RF1_BACSU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|1075885|pir||S55437
peptide chain release factor 1 - Bacillus subtilis
>gi|853776|emb|CAA89884.1| (Z49782) peptide chain
release factor 1 [Bacillus subtilis]
>gi|2636226|emb|CAB15718.1| (Z99122) peptide chain
release factor 1 [Bacillus subtilis]
Length = 356
Score = 333 bits (846), Expect = 1e-90
Identities = 160/341 (46%), Positives = 219/341 (63%), Gaps = 1/341 (0%)
Query: 7 ISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXXX 66
+ RL ++E+Y KL E LS PEV+ D QE ++Y +Y
Sbjct: 2 LDRLKSIEERYEKLNELLSDPEVVNDPKKLREYSKEQSDIQETVDVYRQYRDASEQLADA 61
Query: 67 XXXXXSS-DKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXX 125
D ++R++ +EE++ V L+PKDPND KNV
Sbjct: 62 KAMLEEKLDAEMRDMVKEEISELQKETETLSERLKVLLIPKDPNDDKNVIMEIRGAAGGE 121
Query: 126 XXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVH 185
MY +YAE +GWK ++ +N TG GGYKE+I +I G GAYS+LKYE+G H
Sbjct: 122 EAALFAGNLYRMYSRYAELQGWKTEVMEANVTGTGGYKEIIFMITGSGAYSKLKYENGAH 181
Query: 186 RVQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETA 245
RVQRVP TES GRIHTSTATVA LPE +E ++ I ++++++TF +SG GGQ VNTT +A
Sbjct: 182 RVQRVPETESGGRIHTSTATVACLPEAEEVEVDIHEKDIRVDTFASSGPGGQSVNTTMSA 241
Query: 246 VRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGER 305
VR+TH+PTG+VV CQDE+SQ +NK+KA+K+L A++ D ++++ Q E + RK VG+G+R
Sbjct: 242 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDQTRKSAVGSGDR 301
Query: 306 SEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
SE+IRTYNFPQNRVTDHRI LT+ KL +LEGKLDE+++AL
Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEVVEAL 342
sp|P47849|RF1_COXBU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|623028|emb|CAA55563|
(X78969) orf 361; ranslated orf similarity to SW:
RF1_SALTY peptide chain release factor 1 of Salmonella
typhimurium [Coxiella burnetii]
Length = 361
Score = 318 bits (806), Expect = 5e-86
Identities = 165/346 (47%), Positives = 220/346 (62%), Gaps = 1/346 (0%)
Query: 2 LKEAYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXX 61
+K + I +L L +Y ++ LS VI D + I + ++++
Sbjct: 1 MKPSLIEKLKTLTYRYSEIGGLLSDSTVINDQDRYRELGKEYAQLEPIVKCFQQFQQNEK 60
Query: 62 XXXXXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXX 121
D +LR+LAEEE+ + + LVPKDPND +NV
Sbjct: 61 AIESAEEMQQEKDPELRKLAEEELEQLTLKKEELEDQLNLLLVPKDPNDERNVFLEIRAG 120
Query: 122 XXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYE 181
MY +YAE KGW+V+I+S+++ GG+KEVIA + GEG YS+LK+E
Sbjct: 121 TGGNEAAIFAGDLFRMYARYAETKGWRVNIVSAHEGEHGGFKEVIARVIGEGVYSQLKFE 180
Query: 182 SGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETD-IKIKPEELKIETFRASGAGGQYVN 240
SG HRVQRVPVTES GRIHTS TVA++PEVDE D IKI P EL+I+TFRASGAGGQ+VN
Sbjct: 181 SGAHRVQRVPVTESQGRIHTSACTVAIMPEVDEIDQIKINPAELRIDTFRASGAGGQHVN 240
Query: 241 TTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQV 300
T++A+RITH+PTG+VV+CQDERSQ +NK +A+ +L +KL K+ +E A +RK V
Sbjct: 241 RTDSAIRITHLPTGVVVECQDERSQHKNKARAMSLLQSKLLAAERAKQDQEQAAKRKSLV 300
Query: 301 GTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
G+G+RSE+IRTYNFPQ RVTDHRINLTLY+L +V+EG LD +I L
Sbjct: 301 GSGDRSERIRTYNFPQGRVTDHRINLTLYQLDEVIEGDLDPVIGPL 346
gb|AAD36433.1|AE001790_5 (AE001790) peptide chain release factor RF-1 [Thermotoga maritima]
Length = 342
Score = 306 bits (776), Expect = 2e-82
Identities = 145/210 (69%), Positives = 177/210 (84%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY +YAE KGW + + ++T LGG +EV+ ++G+ AY LKYESGVHRVQRVPVTES
Sbjct: 111 MYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESG 170
Query: 197 GRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGIV 256
GRIHTSTATVAVLPE++E DI+I+PE+LKIETFRASG GGQYVN TE+AVRITH+PTGIV
Sbjct: 171 GRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIV 230
Query: 257 VQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNFPQ 316
V CQ+ERSQ+QNKQ AL+IL A+L + +K+ EI+++RK Q+GTGERSEKIRTYNFPQ
Sbjct: 231 VSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQ 290
Query: 317 NRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
NRVTDHRIN T Y+LQ++L+G LDEII L
Sbjct: 291 NRVTDHRINYTSYRLQEILDGDLDEIISKL 320
sp|P55998|RF1_HELPY PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|2313158|gb|AAD07148.1|
(AE000529) peptide chain release factor RF-1 (prfA)
[Helicobacter pylori 26695]
Length = 352
Score = 304 bits (771), Expect = 6e-82
Identities = 160/341 (46%), Positives = 214/341 (61%), Gaps = 3/341 (0%)
Query: 9 RLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXXXXX 68
+L + ++Y +L LS EV+ D+ +EI+ + Y
Sbjct: 7 KLSSILKRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLENIKENKE 66
Query: 69 XXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXX 128
DK+L ELA+EE+ L+PKDPND KN+
Sbjct: 67 LL--EDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAG 124
Query: 129 XXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQ 188
Y +YA+ K WKV I+SS++ +GGYKE+IALI+G+G YSRLK+E+G HRVQ
Sbjct: 125 IFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQ 184
Query: 189 RVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRI 248
RVP TES GRIHTS TVA++PEVD+ ++ I P +LKIE FRA G GGQ VNTT++AVRI
Sbjct: 185 RVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRI 244
Query: 249 THIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEK 308
TH+PT I V QDE+SQ +NK KALKIL A+L + ++Q AK+RKEQVG+G+RSE+
Sbjct: 245 THLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSER 304
Query: 309 IRTYNFPQNRVTDHRINLTLYKLQDV-LEGKLDEIIDALRA 348
IRTYN+PQNR+++HRINLTLY L+++ L G LDE+I+ L A
Sbjct: 305 IRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIA 345
sp|O51214|RF1_BORBU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|2688096 (AE001130)
peptide chain release factor 1 (prfA) [Borrelia
burgdorferi]
Length = 357
Score = 304 bits (770), Expect = 8e-82
Identities = 148/341 (43%), Positives = 222/341 (64%), Gaps = 1/341 (0%)
Query: 7 ISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXXX 66
+ +L+ K + ++E+L +I+D ++IN Y
Sbjct: 3 LEKLNSATSKIKLIEEKLQDINLIKDQKKYSKIIKEYTYLEKINTKKIEYEKILSQINDT 62
Query: 67 XXXXXSSDK-DLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXX 125
D+ +++EL ++E+ + L+P+D ND+KN+
Sbjct: 63 KTILEKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGE 122
Query: 126 XXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVH 185
MY KY+E+K WK I++ N+T LGG+KE+I I+G+ + +LKYESGVH
Sbjct: 123 EAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVH 182
Query: 186 RVQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETA 245
RVQR+P+TES+GR+ TS ATVAVLP ++ET+I I ++L+I+ +R+SGAGGQ+VNTT++A
Sbjct: 183 RVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSA 242
Query: 246 VRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGER 305
VRITH+PTGIVVQCQ+ERSQ +NK +A+KIL A+L ++ + KKQE+ + RK+QVG+G+R
Sbjct: 243 VRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDR 302
Query: 306 SEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
SE+IRTYNFPQNR+TDHR N+TLYKL++ ++G+LD ++D L
Sbjct: 303 SERIRTYNFPQNRITDHRANITLYKLEEFMQGELDPLLDPL 343
gi|4154581 (AE001446) PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 303 bits (767), Expect = 2e-81
Identities = 159/341 (46%), Positives = 213/341 (61%), Gaps = 3/341 (0%)
Query: 9 RLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXXXXX 68
+L + ++Y +L LS EV+ D+ +EI+ + Y
Sbjct: 7 KLSSILKRYDELTALLSSVEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKENKE 66
Query: 69 XXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXX 128
DK+L ELA+EE+ L+PKDPND KN+
Sbjct: 67 LL--EDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAG 124
Query: 129 XXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQ 188
Y +YA+ K WKV I+SS++ +GGYKE+I LI+G+G YSRLK+E+G HRVQ
Sbjct: 125 IFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQ 184
Query: 189 RVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRI 248
RVP TES GRIHTS TVA++PEVD+ ++ I P +LKIE FRA G GGQ VNTT++AVRI
Sbjct: 185 RVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRI 244
Query: 249 THIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEK 308
TH+PT I V QDE+SQ +NK KALKIL A+L + ++Q AK+RKEQVG+G+RSE+
Sbjct: 245 THLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSER 304
Query: 309 IRTYNFPQNRVTDHRINLTLYKLQDV-LEGKLDEIIDALRA 348
IRTYN+PQNR+++HRINLTLY L+++ L G LDE+I+ L A
Sbjct: 305 IRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIA 345
sp|P43917|RF1_HAEIN PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|1075160|pir||I64129
polypeptide chain release factor 1 (prfA) homolog -
Haemophilus influenzae (strain Rd KW20) >gi|1574404
(U32830) peptide chain release factor 1 (prfA)
[Haemophilus influenzae Rd]
Length = 361
Score = 300 bits (761), Expect = 9e-81
Identities = 149/347 (42%), Positives = 218/347 (61%), Gaps = 3/347 (0%)
Query: 1 MLKEAYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXX 60
M+K++ I++L+ L+E+Y +L+ L VI D +E+ + + R+
Sbjct: 1 MMKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLN 60
Query: 61 XXXXXXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXX 120
D +++E+A+ E+ + L+PKDPND N
Sbjct: 61 QNIEEAEILL--DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIRA 118
Query: 121 XXXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKY 180
MY +YAE K W+V +LS+N++ GGYKEVI + GEG Y +LK+
Sbjct: 119 GTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVTGEGVYGQLKF 178
Query: 181 ESGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDI-KIKPEELKIETFRASGAGGQYV 239
ESG HRVQRVP TES GRIHTS TVAV+PE+ E+++ +I P +L+I+T+R+SGAGGQ+V
Sbjct: 179 ESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHV 238
Query: 240 NTTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQ 299
NTT++AVRITHIPTGIVV+CQDERSQ +NK KA+ +L +++ + ++ E R+
Sbjct: 239 NTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRNL 298
Query: 300 VGTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
+G+G+RS+KIRTYN+PQ RVTDHRINLT+Y+L +V+ GK+DE+I +
Sbjct: 299 LGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPI 345
sp|O83090|RF1_TREPA PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|3322309 (AE001190)
peptide chain release factor 1 (prfA) [Treponema
pallidum]
Length = 351
Score = 297 bits (752), Expect = 1e-79
Identities = 147/341 (43%), Positives = 207/341 (60%), Gaps = 1/341 (0%)
Query: 7 ISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXXX 66
I +L++L+ ++RKLQ+E+ P + + E Y+RY
Sbjct: 2 IEKLEELRAQWRKLQQEVENPSLFSSTQSYRERMRDHAYLSRLMEEYDRYLLTEKQLEDA 61
Query: 67 XXXXXS-SDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXX 125
SD D +++ +E+ L+P D KN+
Sbjct: 62 HVLIQDESDADFKDVIRQEIRTLEAALHTSQKRLKTLLIPPDSLQEKNIIMEIRGGTGGD 121
Query: 126 XXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVH 185
MY YAE K W+ +L+ ++T LGG+KE+ I G Y L+YESGVH
Sbjct: 122 EAALFAADLFRMYTHYAESKQWRYEVLAVSETELGGFKEITFSISGRDVYGSLRYESGVH 181
Query: 186 RVQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETA 245
RVQRVP TE+SGRIHTS TVAVLPE++ET++ I+ E+++++ RASG GGQ VNTT++A
Sbjct: 182 RVQRVPSTEASGRIHTSAVTVAVLPEMEETEVDIRAEDVRVDVMRASGPGGQCVNTTDSA 241
Query: 246 VRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGER 305
VR+TH+PTGIVV CQDE+SQ +NK KA+++L +++ D E K+Q A+ERK QVG+G+R
Sbjct: 242 VRLTHLPTGIVVVCQDEKSQIKNKAKAMRVLRSRVYDLEESKRQVARARERKSQVGSGDR 301
Query: 306 SEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
SE+IRTYNFPQNRVTDHR+ +TLYKL V++G LD+II+ L
Sbjct: 302 SERIRTYNFPQNRVTDHRVRVTLYKLDAVMQGALDDIIEPL 342
pir||I83569 peptide chain release factor 1 - Escherichia coli >gi|968930
(U18555) peptide chain release factor 1 [Escherichia
coli]
Length = 360
Score = 293 bits (742), Expect = 2e-78
Identities = 147/346 (42%), Positives = 214/346 (61%), Gaps = 3/346 (0%)
Query: 2 LKEAYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXX 61
+K + +++L+ L E++ ++Q L + I D +++ + +
Sbjct: 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQE 60
Query: 62 XXXXXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXX 121
D ++RE+A++E+ V L+PKDP+D +N
Sbjct: 61 DIETAQMML--DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAG 118
Query: 122 XXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYE 181
MY +YAE + W+V I+S+++ GGYKE+IA I G+G Y RLK+E
Sbjct: 119 TGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFE 178
Query: 182 SGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIK-IKPEELKIETFRASGAGGQYVN 240
SG HRVQRVP TES GRIHTS TVAV+PE+ E ++ I P +L+I+TFR+SGAGGQ+VN
Sbjct: 179 SGGHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVN 238
Query: 241 TTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQV 300
TT++A+RITH+PTGIVV+CQDERSQ +NK KAL +L A++ K+Q+ A R+ +
Sbjct: 239 TTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLL 298
Query: 301 GTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
G+G+RS++ RTYNFPQ RVTDHRINLTLY+L +V+EGKLD +I+ +
Sbjct: 299 GSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPI 344
sp|P07011|RF1_ECOLI PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|1651601|dbj|BAA36069|
(D90756) Peptide chain release factor 1 (rf-1).
[Escherichia coli] >gi|1651609|dbj|BAA36079| (D90757)
Peptide chain release factor 1 (rf-1). [Escherichia
coli] >gi|1787462 (AE000219) peptide chain release
factor RF-1 [Escherichia coli]
Length = 360
Score = 292 bits (739), Expect = 3e-78
Identities = 146/346 (42%), Positives = 214/346 (61%), Gaps = 3/346 (0%)
Query: 2 LKEAYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXX 61
+K + +++L+ L E++ ++Q L + I D +++ + +
Sbjct: 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQE 60
Query: 62 XXXXXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXX 121
D ++RE+A++E+ V L+PKDP+D +N
Sbjct: 61 DIETAQMML--DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAG 118
Query: 122 XXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYE 181
MY +YAE + W+V I+S+++ GGYKE+IA I G+G Y RLK+E
Sbjct: 119 TGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFE 178
Query: 182 SGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIK-IKPEELKIETFRASGAGGQYVN 240
SG HRVQRVP TES GRIHTS TVAV+PE+ + ++ I P +L+I+TFR+SGAGGQ+VN
Sbjct: 179 SGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVN 238
Query: 241 TTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQV 300
TT++A+RITH+PTGIVV+CQDERSQ +NK KAL +L A++ K+Q+ A R+ +
Sbjct: 239 TTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLL 298
Query: 301 GTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
G+G+RS++ RTYNFPQ RVTDHRINLTLY+L +V+EGKLD +I+ +
Sbjct: 299 GSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPI 344
sp|P13654|RF1_SALTY PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|96831|pir||B32890
translation releasing factor prfA protein - Salmonella
typhimurium >gi|154104 (J04243) release factor 1
[Salmonella typhimurium]
Length = 360
Score = 292 bits (739), Expect = 3e-78
Identities = 147/346 (42%), Positives = 212/346 (60%), Gaps = 3/346 (0%)
Query: 2 LKEAYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXX 61
+K + +++L+ L E++ ++Q L +I D +++ + +
Sbjct: 1 MKPSIVAKLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQD 60
Query: 62 XXXXXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXX 121
D ++RE+A+EE+ V L+PKDP+D +N
Sbjct: 61 DIETAQMML--DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAG 118
Query: 122 XXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYE 181
MY +YAE + W+V I+S ++ GGYKE+IA I G+G Y RLK+E
Sbjct: 119 TGGDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFE 178
Query: 182 SGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIK-IKPEELKIETFRASGAGGQYVN 240
SG HRVQRVP TES GRIHTS TVAV+PE+ E ++ I P +L+I+TFR+SGAGGQ+VN
Sbjct: 179 SGGHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVN 238
Query: 241 TTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQV 300
TT++A+RITH+PTGIVV+CQDERSQ +NK KAL +L A++ K+Q+ A R+ +
Sbjct: 239 TTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLL 298
Query: 301 GTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
G+G+RS++ RTYNFPQ RVTDHRINLTLY+L + +EGKLD +I+ +
Sbjct: 299 GSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPI 344
gi|147567 (M11519) peptide chain release factor 1 [Escherichia coli]
Length = 360
Score = 290 bits (735), Expect = 1e-77
Identities = 146/346 (42%), Positives = 213/346 (61%), Gaps = 3/346 (0%)
Query: 2 LKEAYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXX 61
+K + +++L+ L E++ ++Q L + I D +++ + +
Sbjct: 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQE 60
Query: 62 XXXXXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXX 121
D ++RE+A++E+ V L+PKDP+D +N
Sbjct: 61 DIETAQMML--DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAG 118
Query: 122 XXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYE 181
MY +YAE + W+V I+S+++ GGYKE+IA I G+G Y RLK+E
Sbjct: 119 TGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFE 178
Query: 182 SGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIK-IKPEELKIETFRASGAGGQYVN 240
SG HRVQRVP TES GRIHTS TVAV+PE+ + ++ I P +L+I+TFR+SGAGGQ+VN
Sbjct: 179 SGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVN 238
Query: 241 TTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQV 300
TT +A+RITH+PTGIVV+CQDERSQ +NK KAL +L A++ K+Q+ A R+ +
Sbjct: 239 TTGSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLL 298
Query: 301 GTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
G+G+RS++ RTYNFPQ RVTDHRINLTLY+L +V+EGKLD +I+ +
Sbjct: 299 GSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPI 344
sp|Q9ZD21|RF1_RICPR PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|3861078|emb|CAA14978|
(AJ235272) PEPTIDE CHAIN RELEASE FACTOR 1 (prfA)
[Rickettsia prowazekii]
Length = 355
Score = 288 bits (730), Expect = 4e-77
Identities = 145/276 (52%), Positives = 194/276 (69%), Gaps = 1/276 (0%)
Query: 74 DKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXXXXXXX 133
D E+ + E++ + L+PKD D+K+
Sbjct: 70 DNATLEMIDNEIHTLENLLPKLERAVRISLLPKDEADSKSAIIEVRAGSGGEEAALFAAV 129
Query: 134 XXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVT 193
MYQ+Y+E KGW+ IL+ + TG+GGYKE A I+G+ +S+LK+ESGVHRVQR+P T
Sbjct: 130 LFNMYQRYSEFKGWRFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRIPET 189
Query: 194 ESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPT 253
ES GRIHTS ATVAVLPE + DIKI+ ++L+I+T+RASGAGGQ+VNTT++AVRITHIPT
Sbjct: 190 ESQGRIHTSAATVAVLPEAEGIDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPT 249
Query: 254 GIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYN 313
GI V QDE+SQ +NK KALKIL A+L + R+K++E + R+ QVG+G+RSE+IRTYN
Sbjct: 250 GITVALQDEKSQHKNKAKALKILRARLYEEKRRQKEQERSDSRRGQVGSGDRSERIRTYN 309
Query: 314 FPQNRVTDHRINLTLYKLQDVLE-GKLDEIIDALRA 348
FPQ RV+DHRINLTLYK+ +V++ G+LDE I+AL A
Sbjct: 310 FPQGRVSDHRINLTLYKIDEVVKHGQLDEFIEALIA 345
sp|P96077|RF1_THETH PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|1785848|dbj|BAA13349|
(D87366) peptide chain release factor 1 [Thermus
thermophilus]
Length = 354
Score = 287 bits (727), Expect = 9e-77
Identities = 148/341 (43%), Positives = 204/341 (59%), Gaps = 2/341 (0%)
Query: 7 ISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXXX 66
+ +LD+L+E+YR+L+ LS PEV++D E+ L Y
Sbjct: 2 LDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQA 61
Query: 67 XXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXX 126
D +L+E+A+ E HL+PKDP D ++
Sbjct: 62 ESLL--DDPELKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEE 119
Query: 127 XXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHR 186
MY ++AEE G++ +L S+ T LGG+ +V+ + G GAY KYESGVHR
Sbjct: 120 AALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHR 179
Query: 187 VQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAV 246
VQRVPVTE+ GRIHTSTATVAVLP+ +E D + +E++I+ RASG GGQ VNTT++AV
Sbjct: 180 VQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAV 239
Query: 247 RITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERS 306
R+ H+PTGI+V CQD RSQ +N++KAL IL ++L + ++ E + K R Q+GTGERS
Sbjct: 240 RVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERS 299
Query: 307 EKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDALR 347
EKIRTYNFPQ+RVTDHRI T + L+ VL G L I++AL+
Sbjct: 300 EKIRTYNFPQSRVTDHRIGFTTHDLEGVLSGHLTPILEALK 340
sp|P71496|RF1_MYCCA PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|1526559|dbj|BAA08795.1|
(D50100) Peptide Termination Factor [Mycoplasma
capricolum]
Length = 370
Score = 282 bits (714), Expect = 3e-75
Identities = 148/338 (43%), Positives = 205/338 (59%), Gaps = 1/338 (0%)
Query: 10 LDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXXXXXX 69
L+ +Q++ ++Q++L +++D+ +E+ E + Y
Sbjct: 9 LETMQKRLFQIQKDLEDENILKDIKKFTELNKEKANLEEVVEKFVEYKKAVDHIKDAKAI 68
Query: 70 XXSS-DKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXX 128
+ D +L ELA+ E++ L+PKDPND KNV
Sbjct: 69 LENEKDSELIELAKIELDENNDKVEHLQQVIEEMLLPKDPNDEKNVIIEIRGAAGGDEAN 128
Query: 129 XXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQ 188
MY+ YAE + WK++IL ++ GGY +V+ +I+G+ YS+LK+ESG HRVQ
Sbjct: 129 IFAGDLLRMYKLYAETQNWKINILEASLGEAGGYSQVVFMIKGDRVYSKLKFESGAHRVQ 188
Query: 189 RVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRI 248
RVP TE+ GRI TSTATVAVLPE+ E +I+I+ +L+I+T+RASGAGGQ+VNTT++AVRI
Sbjct: 189 RVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRI 248
Query: 249 THIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEK 308
TH+PTGIVV QD RSQ NK A+ +L AK+ + K+Q + RK VGTG RSEK
Sbjct: 249 THLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQAQADATRKNAVGTGARSEK 308
Query: 309 IRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
RTYN+PQNRVTDHR+ LTL KL V+EG +DE I AL
Sbjct: 309 FRTYNYPQNRVTDHRVGLTLNKLDQVMEGNIDEFIIAL 346
sp|P74707|RF1_SYNY3 PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|1653916|dbj|BAA18826|
(D90917) peptide chain release factor [Synechocystis
sp.]
Length = 365
Score = 272 bits (689), Expect = 2e-72
Identities = 139/347 (40%), Positives = 207/347 (59%), Gaps = 4/347 (1%)
Query: 2 LKEAYI-SRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXX 60
+ E Y+ +L +++ Y++L L+ P++ + +E + YE +
Sbjct: 1 MAETYLLDKLASVEQTYQELTRMLADPDIATNPDELQRVAKARSSLEETVDTYETWKRSQ 60
Query: 61 XXXXXXXXXXXSS--DKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXX 118
S D ++RE+A+ EV + L+PKDPND KN+
Sbjct: 61 EDLKGARQIVKESGNDPEMREMAQLEVEELENAIGELEKRLTILLLPKDPNDEKNIMLEI 120
Query: 119 XXXXXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRL 178
MY +YAE +GWKVS+LS + +GG+KE I ++G+ YS+L
Sbjct: 121 RAGTGGDEASIWAGDLVRMYTRYAESQGWKVSLLSESLADMGGFKEAILEVKGDRVYSQL 180
Query: 179 KYESGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQY 238
K+E+GVHRVQRVPVTE+ GR+HTSTATVA++PEVD+ ++KI P+++++ T R+ GAGGQ
Sbjct: 181 KFEAGVHRVQRVPVTEAGGRVHTSTATVAIMPEVDDVEVKIDPKDIEMSTARSGGAGGQN 240
Query: 239 VNTTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKE 298
VN ETAV + H PTGI + C +ERSQ QN+++A++IL AKL D +++ + I+ R+
Sbjct: 241 VNKVETAVDLFHKPTGIRIFCTEERSQLQNRERAMQILRAKLYDMMLQEQNDAISSNRRS 300
Query: 299 QVGTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
QVGTG RSEKIRTYN+ NRVTDHR+ + L LEG++ II++
Sbjct: 301 QVGTGSRSEKIRTYNYKDNRVTDHRLGRN-FDLNTALEGEIHTIIES 346
sp|Q9Z968|RF1_CHLPN PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|4376376|gb|AAD18266|
(AE001598) Peptide Chain Releasing Factor [Chlamydia
pneumoniae]
Length = 357
Score = 267 bits (676), Expect = 8e-71
Identities = 145/344 (42%), Positives = 196/344 (56%), Gaps = 10/344 (2%)
Query: 6 YISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXX 65
Y++RL +++ K +S PE+ + E+ Y++
Sbjct: 8 YLNRLAEVEIK-------ISNPEIFSNSKEYSALSKEHSYLLELKNAYDKILNLEKVLAD 60
Query: 66 XXXXXX-SSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXX 124
D ++ + EE +N LVP DP+D NV
Sbjct: 61 DKQALAIEKDPEMVVMLEEGINENKVELEKLNKILESLLVPPDPDDDLNVIMELRAGTGG 120
Query: 125 XXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGV 184
MY YA KGWK +LS++++ L GYKE + I G G L+YE+G
Sbjct: 121 EEAALFVGDCVRMYHLYASSKGWKYEVLSASESDLKGYKEYVMGISGTGVKRLLQYEAGT 180
Query: 185 HRVQRVPVTESSGRIHTSTATVAVLPEVDE--TDIKIKPEELKIETFRASGAGGQYVNTT 242
HRVQRVP TE+ GR+HTS T+AVLPE E T++ I ++LKI+TFRASGAGGQ+VN T
Sbjct: 181 HRVQRVPETETQGRVHTSAITIAVLPEPSEEDTELLINEKDLKIDTFRASGAGGQHVNVT 240
Query: 243 ETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGT 302
++AVRITH+PTG+VV CQDERSQ +NK KA++IL A+++D +K+ E + R QVG+
Sbjct: 241 DSAVRITHLPTGVVVTCQDERSQHKNKDKAMRILKARIRDAEMQKRHNEASAMRSAQVGS 300
Query: 303 GERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
G+RSE+IRTYNF QNRVTDHRI LTLY L V+EG LD I A+
Sbjct: 301 GDRSERIRTYNFSQNRVTDHRIGLTLYNLDKVMEGDLDPITTAM 344
gb|AAC67613.1| (AE001277) Peptide Chain Releasing Factor (RF-1) [Chlamydia
trachomatis]
Length = 359
Score = 259 bits (655), Expect = 2e-68
Identities = 128/246 (52%), Positives = 171/246 (69%), Gaps = 2/246 (0%)
Query: 103 LVPKDPNDTKNVXXXXXXXXXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGY 162
L+P DP+D +V MY YA KGW+ +LS++++ LGGY
Sbjct: 99 LIPPDPDDDLSVIMELRAGTGGDEAALFVGDCVRMYHLYAASKGWQCEVLSTSESDLGGY 158
Query: 163 KEVIALIEGEGAYSRLKYESGVHRVQRVPVTESSGRIHTSTATVAVLPEV--DETDIKIK 220
KE + I G L+YE+G HRVQRVP TE+ GR+HTS TVAVLPE D+ ++ I
Sbjct: 159 KEYVMGISGASVKRFLQYEAGTHRVQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFID 218
Query: 221 PEELKIETFRASGAGGQYVNTTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKL 280
++L+I+TFR+SGAGGQ+VN T++AVRITHIP+G+VV CQDERSQ +NK KA+++L A++
Sbjct: 219 EKDLRIDTFRSSGAGGQHVNVTDSAVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARI 278
Query: 281 KDYYERKKQEEIAKERKEQVGTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLD 340
+D +K+ +E + R QVG+G+RSE+IRTYNFPQNRVTDHRI LTLY L V+EG+LD
Sbjct: 279 RDAEVQKRAQEASAMRSAQVGSGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVMEGELD 338
Query: 341 EIIDAL 346
I AL
Sbjct: 339 MITTAL 344
sp|P47500|RF1_MYCGE PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|1361739|pir||E64228
peptide chain release factor 1 - Mycoplasma genitalium
(SGC3) >gi|1045950 (U39704) peptide chain release factor
1 (prfA) [Mycoplasma genitalium]
Length = 359
Score = 257 bits (650), Expect = 9e-68
Identities = 134/277 (48%), Positives = 179/277 (64%), Gaps = 1/277 (0%)
Query: 72 SSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXXXXX 131
SS K+L E A++E+ + L+P D N+ KNV
Sbjct: 72 SSLKELHEEAKKELEKIKASLPSLEEEIKFLLLPVDENNQKNVIVEIRPAAGGDESCIFL 131
Query: 132 XXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVP 191
MY+ Y K W V + +G V + G +++LK+ESGVHRVQRVP
Sbjct: 132 SDLFNMYKNYCTSKNWTVELNEIIPASVG-INFVSFAVNGTDVFAKLKFESGVHRVQRVP 190
Query: 192 VTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHI 251
+TE+ GR+HTST TVAVLP+++E +I I P +L+I+T+RASGAGGQ+VN TE+AVRITH+
Sbjct: 191 LTEAKGRVHTSTVTVAVLPQLEEVEITINPSDLRIDTYRASGAGGQHVNRTESAVRITHL 250
Query: 252 PTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRT 311
PTGIVV CQ+ +SQF N+ KA+K+L AKL + + K+ A RK QVG+GER+EKIRT
Sbjct: 251 PTGIVVACQEGKSQFSNRDKAMKMLRAKLWENAQNKQLSTQADLRKSQVGSGERAEKIRT 310
Query: 312 YNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDALRA 348
YN+PQNR+TDHRI LT+ KL V+ G LDEII+AL+A
Sbjct: 311 YNYPQNRITDHRIKLTINKLNTVILGDLDEIIEALQA 347
gb|AAC34223.1| (AC004411) putative peptide chain release factor [Arabidopsis
thaliana]
Length = 395
Score = 254 bits (642), Expect = 8e-67
Identities = 121/276 (43%), Positives = 180/276 (64%), Gaps = 1/276 (0%)
Query: 72 SSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXXXXX 131
S DKD+ +LA E++ L+PKD D ++
Sbjct: 104 SDDKDMLDLAVGELDEAVEEEKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFA 163
Query: 132 XXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVP 191
MY++Y+++KGWK I+ ++ + GYKE A I G Y +LK+ESG+HRVQR+P
Sbjct: 164 MDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIP 223
Query: 192 VTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHI 251
+TE SGRIHTS +VA+LP+ DE D++++ E+L+I+T+R+ G+GGQ+ NTT +AVRI H+
Sbjct: 224 ITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHL 283
Query: 252 PTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRT 311
PTG++V QDERSQ N+ KALK+L A+L + + Q +K R +Q+G+G+RS +IRT
Sbjct: 284 PTGMMVSIQDERSQHMNRAKALKVLCARLYEIERLRIQSSRSKLRSDQIGSGDRSGRIRT 343
Query: 312 YNFPQNRVTDHRINLTLYKLQDVLEGK-LDEIIDAL 346
YNFPQ RVTDHR+ +T + ++D+++G+ LD IDAL
Sbjct: 344 YNFPQGRVTDHRVGITHHAIEDMMQGENLDMFIDAL 379
sp|P75420|RF1_MYCPN PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|2146487|pir||S73801
peptide chain release factor 1 - Mycoplasma pneumoniae
(SGC3) (ATCC 29342) >gi|1674166 (AE000047) Mycoplasma
pneumoniae, peptide chain release factor 1; similar to
GenBank Accession Number S55437, from B. subtilis
[Mycoplasma pneumoniae]
Length = 359
Score = 252 bits (636), Expect = 4e-66
Identities = 136/344 (39%), Positives = 205/344 (59%), Gaps = 4/344 (1%)
Query: 6 YISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXX 65
+ S ++K+ E +L+++L+KP++ + Q + ++ +
Sbjct: 7 FFSSVEKIVELAEQLEKDLNKPDLTFE--QIKAINKELKHKQPLVVKFKEFKRLIDQALE 64
Query: 66 XXXXXXSSD-KDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXX 124
+++ K+L + A++E+ R + L+P D N+ KNV
Sbjct: 65 AEAILENNELKELHDEAKKELERVRSVVPEYEEALKLLLLPIDENNQKNVIVELRPAAGG 124
Query: 125 XXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGV 184
MY+ + KGWK+ I + +G V + G +++LK+ESGV
Sbjct: 125 DESCIFLADLFNMYRNFCSNKGWKLQINEMIPSSVG-LNFVSFEVNGVDVFAKLKFESGV 183
Query: 185 HRVQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTET 244
HRVQRVP TES GR+HTST TVAVLP+++ ++ I P +L+++T+RASGAGGQ+VN TE+
Sbjct: 184 HRVQRVPATESKGRVHTSTVTVAVLPQLEAVEVHINPADLRVDTYRASGAGGQHVNRTES 243
Query: 245 AVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGE 304
AVRITH+PTGIVV CQ+ +SQF N+ A+K+L AKL + + ++ A RK QVG+G+
Sbjct: 244 AVRITHLPTGIVVSCQEGKSQFTNRDTAMKMLRAKLWEKAQNEQLSTQAGLRKSQVGSGD 303
Query: 305 RSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDALRA 348
R+EKIRTYN+PQNRVTDHRI LT+ KL ++ G LDEII+AL+A
Sbjct: 304 RAEKIRTYNYPQNRVTDHRIKLTVNKLNTIILGDLDEIIEALQA 347
pir||FCECR1 translation releasing factor RF-1 - Escherichia coli
Length = 323
Score = 247 bits (625), Expect = 8e-65
Identities = 126/316 (39%), Positives = 187/316 (58%), Gaps = 3/316 (0%)
Query: 2 LKEAYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXX 61
+K + +++L+ L E++ ++Q L + I D +++ + +
Sbjct: 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQE 60
Query: 62 XXXXXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXX 121
D ++RE+A++E+ V L+PKDP+D +N
Sbjct: 61 DIETAQMML--DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAG 118
Query: 122 XXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYE 181
MY +YAE + W+V I+S+++ GGYKE+IA I G+G Y RLK+E
Sbjct: 119 TGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFE 178
Query: 182 SGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIK-IKPEELKIETFRASGAGGQYVN 240
SG HRVQRVP TES GRIHTS TVAV+PE+ + ++ I P +L+I+TFR+SGAGGQ+VN
Sbjct: 179 SGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVN 238
Query: 241 TTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQV 300
TT +A+RITH+PTGIVV+CQDERSQ +NK KAL +L A++ K+Q+ A R+ +
Sbjct: 239 TTGSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLL 298
Query: 301 GTGERSEKIRTYNFPQ 316
G+G+RS++ RTYNFPQ
Sbjct: 299 GSGDRSDRNRTYNFPQ 314
sp|Q10605|RF1_MYCTU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|1322423|emb|CAA97732|
(Z73419) prfA [Mycobacterium tuberculosis]
Length = 357
Score = 240 bits (605), Expect = 2e-62
Identities = 120/252 (47%), Positives = 162/252 (63%), Gaps = 6/252 (2%)
Query: 103 LVPKDPNDTKNVXXXXXXXXXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGY 162
L P+DP+D ++ MY +YAE GW V++L + LGGY
Sbjct: 96 LAPRDPHDADDIVLEVKSGEGGEESALFAADLARMYIRYAERHGWAVTVLDETTSDLGGY 155
Query: 163 KEVIALIEG-----EGAYSRLKYESGVHRVQRVPVTESSGRIHTSTATVAVLPEVDET-D 216
K+ I +G +SR+K+E GVHRVQRVPVTES GR+HTS A V V PE +E
Sbjct: 156 KDATLAIASKADTPDGVWSRMKFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVGQ 215
Query: 217 IKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGIVVQCQDERSQFQNKQKALKIL 276
++I +L+I+ FR+SG GGQ VNTT++AVRITH+PTGIVV CQ+ERSQ QNK +AL++L
Sbjct: 216 VQIDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQNKTRALQVL 275
Query: 277 YAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLE 336
A+L+ E + + + +R Q+ T +RSE+IRTYNFP+NR+TDHRI + L VL+
Sbjct: 276 AARLQAMAEEQALADASADRASQIRTVDRSERIRTYNFPENRITDHRIGYKSHNLDQVLD 335
Query: 337 GKLDEIIDALRA 348
G LD + DAL A
Sbjct: 336 GDLDALFDALSA 347
sp|P45833|RF1_MYCLE PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) >gi|699334 (U15186) peptide
chain release factor 1 [Mycobacterium leprae]
Length = 357
Score = 232 bits (586), Expect = 3e-60
Identities = 118/256 (46%), Positives = 160/256 (62%), Gaps = 10/256 (3%)
Query: 103 LVPKDPNDTKNVXXXXXXXXXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGY 162
L P DP+ ++ MY +YAE GW V++L + LGGY
Sbjct: 92 LAPHDPHGPDDIVLEVKSGEGGEESALFAADLARMYIRYAERHGWTVTVLDETTSDLGGY 151
Query: 163 KEVIALIEGEGA---------YSRLKYESGVHRVQRVPVTESSGRIHTSTATVAVLPEVD 213
K+ I +GA +SR+K+E GVHRVQRVPVTES GR+HTS A V V PE +
Sbjct: 152 KDATLAISHKGASDGDAVDGVWSRMKFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPE 211
Query: 214 ET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGIVVQCQDERSQFQNKQKA 272
E ++ I +L+I+ +R+SG GGQ VNTT++AVRITH+PTG+VV CQ+ERSQ QNK +A
Sbjct: 212 EIGEVHIDESDLRIDVYRSSGKGGQGVNTTDSAVRITHLPTGVVVTCQNERSQLQNKTRA 271
Query: 273 LKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNFPQNRVTDHRINLTLYKLQ 332
L++L A+L+ E + + +R Q+ T +RSE+IRTYNFP+NR+TDHRI + L
Sbjct: 272 LQVLAARLQAMAEEQALANASADRASQIRTVDRSERIRTYNFPENRITDHRIGYKAHNLD 331
Query: 333 DVLEGKLDEIIDALRA 348
VL+G LD + DAL A
Sbjct: 332 QVLDGDLDALFDALSA 347
gb|AAF10553.1|AE001950_5 (AE001950) peptide chain release factor 1 [Deinococcus radiodurans]
Length = 375
Score = 222 bits (561), Expect = 3e-57
Identities = 130/350 (37%), Positives = 192/350 (54%), Gaps = 8/350 (2%)
Query: 5 AYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELY---ERYXXXXX 61
A +SRL++L ++ ++ L P+ + D + L E+
Sbjct: 2 ANMSRLNELVSEFGLVERRLGDPQALADGREYARLTRRHRELLPLVTLVREREQAEADLS 61
Query: 62 XXXXXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXX 121
D D++ELA+ EV V L+P DP+D K+V
Sbjct: 62 GARELLQDPDMRDPDMKELAQLEVGGLQARLAEIEAELEVLLLPTDPDDGKDVILELRAG 121
Query: 122 XXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYE 181
MY++YA K+++L + ++ LGG +V+A + G+ A+ LK+E
Sbjct: 122 AGGAEAGLFVMDLLRMYERYAAGLNLKLNVLDAAESDLGGASKVVAEVTGDFAFRALKWE 181
Query: 182 SGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNT 241
GVHRVQRVP TES GRIHTSTATVAVLPE + ++ + E++I+ FR+ GAGGQ VNT
Sbjct: 182 RGVHRVQRVPATESQGRIHTSTATVAVLPEAEPGEVNLDLSEVRIDVFRSQGAGGQGVNT 241
Query: 242 TETAVRITH---IPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKE 298
T++AVR + P I+V CQD RSQ +N++KAL++L A+L + ++ + +ER
Sbjct: 242 TDSAVRAVYRAGTPDEIMVICQDGRSQIKNREKALQVLTARLAERERAAREAQERQERAS 301
Query: 299 QVGTGERSEKIRTYNFPQNRVTDHRI--NLTLYKLQDVLEGKLDEIIDAL 346
QVG+G+RSEKIRTYN+PQNRVTDHR+ + L V+ G L ++ AL
Sbjct: 302 QVGSGDRSEKIRTYNYPQNRVTDHRLEGEDKNHPLDAVMAGGLAPVVSAL 351
sp|P41767|RF1M_KLULA MITOCHONDRIAL PEPTIDE CHAIN RELEASE FACTOR 1 PRECURSOR (MRF-1)
>gi|641909 (U19586) peptide termination factor
[Kluyveromyces lactis]
Length = 396
Score = 222 bits (559), Expect = 4e-57
Identities = 123/283 (43%), Positives = 166/283 (58%), Gaps = 8/283 (2%)
Query: 74 DKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXXXXXXX 133
D LRE AE ++ L+P P K
Sbjct: 98 DPSLREEAEADIAALLPDLNKTGDSLLNKLLPPHPFADKPSILELRPGVGGSEAMIFTQD 157
Query: 134 XXXMYQKYAEEKGWKVSILSSNKTGLG-GYKEVIALIEGEGAYSRLKYESGVHRVQRVPV 192
MY YA WK +++S + G G E I I+ G+Y +LK+E+GVHRVQRVP
Sbjct: 158 LLNMYINYANYHKWKWNLISKTENASGSGVLEAILNIDEPGSYDKLKFEAGVHRVQRVPA 217
Query: 193 TESSGRIHTSTATVAVLP------EVDETDIKIKPEELKIETFRASGAGGQYVNTTETAV 246
TES GR HTSTA V VLP E D + KP+E++I+ RASG GGQ+VNTT++AV
Sbjct: 218 TESKGRTHTSTAAVIVLPKMGEESESDAYERTFKPDEIRIDVMRASGKGGQHVNTTDSAV 277
Query: 247 RITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERS 306
R+TH P+GIV+ Q+ERSQ +NK KA IL A+L + +K+E+ RK+QV T +RS
Sbjct: 278 RLTHYPSGIVISMQEERSQHRNKAKAFAILRARLAEKERLEKEEKERNARKDQVSTTDRS 337
Query: 307 EKIRTYNFPQNRVTDHRINLTLYKLQDVLEG-KLDEIIDALRA 348
+KIRTYN+PQNR+TDHR TLY ++ V++G +LD++IDA+ A
Sbjct: 338 DKIRTYNYPQNRITDHRCGFTLYDIEGVMKGERLDDVIDAMDA 380
ref|NP_011372.1|MRF1| Mitochondrial polypeptide chain release factor; Mrf1p
>gi|400276|sp|P30775|RF1M_YEAST MITOCHONDRIAL PEPTIDE
CHAIN RELEASE FACTOR 1 PRECURSOR (MRF-1)
>gi|283202|pir||S28602 translation releasing factor
RF-1, mitochondrial - yeast (Saccharomyces cerevisiae)
>gi|3972|emb|CAA42932| (X60381) mitochondrial release
factor 1 [Saccharomyces cerevisiae]
>gi|1322722|emb|CAA96855| (Z72665) ORF YGL143c
[Saccharomyces cerevisiae] >gi|1498241|emb|CAA68219|
(X99960) YGL143c [Saccharomyces cerevisiae]
Length = 413
Score = 222 bits (559), Expect = 4e-57
Identities = 126/284 (44%), Positives = 163/284 (57%), Gaps = 10/284 (3%)
Query: 73 SDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXXXXXX 132
SD LR AE+E L+P P K
Sbjct: 114 SDPSLRAEAEQEYAELVPQYETTSSRLVNKLLPPHPFADKPSLLELRPGVGGIEAMIFTQ 173
Query: 133 XXXXMYQKYAEEKGWKVSILSSNKTGLG-GYKEVIALIEGEGAYSRLKYESGVHRVQRVP 191
MY YA + WK I+S N+ G G + I IE G+Y RL++E+GVHRVQR+P
Sbjct: 174 NLLDMYIGYANYRKWKYRIISKNENESGSGIIDAILSIEEAGSYDRLRFEAGVHRVQRIP 233
Query: 192 VTESSGRIHTSTATVAVLPEVDETDIK--------IKPEELKIETFRASGAGGQYVNTTE 243
TE+ GR HTSTA V VLP++ + K KP E++++ RASG GGQ+VNTT+
Sbjct: 234 STETKGRTHTSTAAVVVLPQIGDESAKSIDAYERTFKPGEIRVDIMRASGKGGQHVNTTD 293
Query: 244 TAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTG 303
+AVR+THIP+GIVV QDERSQ +NK KA IL A+L + +K+E+ K RK QV +
Sbjct: 294 SAVRLTHIPSGIVVSMQDERSQHKNKAKAFTILRARLAEKERLEKEEKERKARKSQVSST 353
Query: 304 ERSEKIRTYNFPQNRVTDHRINLTLYKLQDVLEG-KLDEIIDAL 346
RS+KIRTYNFPQNR+TDHR TL L VL G +LDE+I+A+
Sbjct: 354 NRSDKIRTYNFPQNRITDHRCGFTLLDLPGVLSGERLDEVIEAM 397
sp|Q09691|RF1M_SCHPO PUTATIVE MITOCHONDRIAL PEPTIDE CHAIN RELEASE FACTOR PRECURSOR
>gi|2130385|pir||S58161 hypothetical protein SPAC2F7.17
- fission yeast (Schizosaccharomyces pombe)
>gi|1052800|emb|CAA90504.1| (Z50142) mitochondrial
peptide chain release factor 1 precursor
[Schizosaccharomyces pombe]
Length = 396
Score = 213 bits (538), Expect = 1e-54
Identities = 113/216 (52%), Positives = 143/216 (65%), Gaps = 5/216 (2%)
Query: 137 MYQKYAEEKGWKVSILSSNKT-GLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTES 195
MY +YA KGW +S + GL E I IEGEGAY L E GVHRVQR P TE+
Sbjct: 167 MYFQYANFKGWNCKFISKSAVQGLEAITEAIFSIEGEGAYGHLMLEGGVHRVQRTPATET 226
Query: 196 SGRIHTSTATVAVLPEV--DETDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPT 253
GR+HTSTA+V VLP+V DE+ E+KIE R+ GAGGQ+VN TE+AVR+THIPT
Sbjct: 227 KGRVHTSTASVIVLPQVSNDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRLTHIPT 286
Query: 254 GIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYN 313
GI V QD RSQ QNK+KA +L ++L K+ E +RK QV + +RSEK+RTYN
Sbjct: 287 GITVSMQDSRSQHQNKEKAFLVLNSRLAALNAAKENEAERLKRKNQVTSSDRSEKLRTYN 346
Query: 314 FPQNRVTDHRINLTLYKLQDVLEG--KLDEIIDALR 347
F QNRVTDHRI L+++ L ++G K DE ++ +R
Sbjct: 347 FNQNRVTDHRIGLSMHDLSTFMQGEEKFDEFLEKIR 382
ref|NP_004285.1|| mitochondrial translational release factor 1
>gi|6093955|sp|O75570|RF1M_HUMAN MITOCHONDRIAL PEPTIDE
CHAIN RELEASE FACTOR 1 PRECURSOR (MRF-1) >gi|3328106
(AF072934) translational release factor 1 [Homo sapiens]
Length = 445
Score = 206 bits (520), Expect = 2e-52
Identities = 120/283 (42%), Positives = 160/283 (56%), Gaps = 13/283 (4%)
Query: 74 DKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXX--XXX 131
+K L ELA EE LVPK+ D +V
Sbjct: 145 EKQLLELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQQFT 204
Query: 132 XXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVP 191
MYQ Y+ K W+ L+ GG A I G+G Y LKYE G+HRVQR+P
Sbjct: 205 REIFDMYQNYSCYKHWQFEPLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIP 264
Query: 192 VTESSGR---IHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRI 248
S R IHT T +V VLP+ DE D+K+ P++L+I+TFRA GAGGQ+VN T++AVR+
Sbjct: 265 EVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRL 324
Query: 249 THIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEK 308
HIPTG+VV+CQ ERSQ +NK+ A ++L A+L K + + RK QVGT +SE+
Sbjct: 325 VHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQVGTRAQSER 384
Query: 309 IRTYNFPQNRVTDHRINLTLYKLQDVLE----GK-LDEIIDAL 346
IRTYNF Q+RV+DHRI Y+++D+ E GK LD++I L
Sbjct: 385 IRTYNFTQDRVSDHRI---AYEVRDIKEFLCGGKGLDQLIQRL 424
gb|AAD36646.1|AE001802_15 (AE001802) peptide chain release factor RF-2 [Thermotoga maritima]
Length = 369
Score = 192 bits (483), Expect = 4e-48
Identities = 107/211 (50%), Positives = 142/211 (66%), Gaps = 3/211 (1%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++AE KG+ V I+ G K+ LI+GE AY LK+ESGVHR+ R+ +++
Sbjct: 150 MYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAA 209
Query: 197 GRIHTSTATVAVLPEVDE-TDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
R HTS A+V V+PE+D+ DI+I+PE+LKIETFRASG GGQYVN TE+AVRITH+PTGI
Sbjct: 210 RRRHTSFASVNVIPEIDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGI 269
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNF- 314
VV CQ+ERSQ QNKQ ALKIL AKL KK+ EI +E + ++ +IR+Y F
Sbjct: 270 VVSCQNERSQHQNKQTALKILKAKLYQLEMEKKRREI-QEIQGELKDISWGNQIRSYIFH 328
Query: 315 PQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
P V DHR + + V++G +D I+A
Sbjct: 329 PYTMVKDHRTGVETANVDAVMDGDIDMFIEA 359
sp|O67695|RF2_AQUAE PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|2984119 (AE000758)
peptide chain release factor RF-2 [Aquifex aeolicus]
Length = 373
Score = 191 bits (480), Expect = 8e-48
Identities = 118/340 (34%), Positives = 175/340 (50%), Gaps = 13/340 (3%)
Query: 11 DKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXXXXXXXX 70
+KL+ + ++L +++S+P +D +E +
Sbjct: 27 EKLESELKELDQKMSEPNFWEDQEKAKQVIQRRKWVEETLNKLKNLEKSVKDLEELVEIT 86
Query: 71 XSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXXXX 130
D + + +EE+ + D KN
Sbjct: 87 SEEDTETWAMMDEEIKEVERTLRELELKTYL----SGEMDAKNAYLTIQAGAGGTEACDW 142
Query: 131 XXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRV 190
MY+++AE+KG++V ++ + G K V L++G AY LK E GVHR+ R+
Sbjct: 143 ADMLFRMYKRWAEKKGYEVELIDITPDDVAGIKSVTVLVKGPYAYGYLKGEQGVHRLVRI 202
Query: 191 PVTESSGRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRIT 249
+++ R HTS A V+V+P++DE I+IKPE+LKIETFRASGAGGQYVN T+TAVRIT
Sbjct: 203 SPFDANARRHTSFAAVSVMPQIDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVRIT 262
Query: 250 HIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKE---RKEQVGTGERS 306
HIPTGI V CQ ERSQ+QNK+KAL++L AKL E KK EE K+ K +G G
Sbjct: 263 HIPTGITVSCQQERSQYQNKRKALELLKAKLYQ-LEMKKLEEKKKQYEGEKTDIGWG--- 318
Query: 307 EKIRTYNF-PQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
+IR+Y F P + D R ++ V++G++DE I++
Sbjct: 319 HQIRSYVFHPYKLIKDLRTGYETGNVEAVMDGEIDEFIES 358
emb|CAA60204| (X86479) prfA [Clostridium perfringens]
Length = 136
Score = 186 bits (467), Expect = 3e-46
Identities = 87/135 (64%), Positives = 114/135 (84%)
Query: 203 TATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGIVVQCQDE 262
TATVAVLPEVD+ +I+I +++KI+ FRASG GGQ VNTT++AVRITH+P+G+VV CQDE
Sbjct: 1 TATVAVLPEVDDVEIEINDKDIKIDVFRASGNGGQCVNTTDSAVRITHLPSGLVVSCQDE 60
Query: 263 RSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNFPQNRVTDH 322
+SQ +NK+KA+K+L A+L + E ++ IA++RK QVGTG+RSE+IRTYN+PQ RVTDH
Sbjct: 61 KSQLKNKEKAMKVLRARLFEQAEAERLAGIAEDRKSQVGTGDRSERIRTYNYPQGRVTDH 120
Query: 323 RINLTLYKLQDVLEG 337
RIN+TLYKL LEG
Sbjct: 121 RINMTLYKLDSFLEG 135
sp|P28367|RF2_BACSU PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|2331287 (AF013188)
release factor 2 [Bacillus subtilis] >gi|2618874
(AF017113) putative peptide chain release factor RF-2
[Bacillus subtilis] >gi|2636055|emb|CAB15546.1| (Z99122)
peptide chain release factor 2 [Bacillus subtilis]
Length = 366
Score = 183 bits (461), Expect = 1e-45
Identities = 104/247 (42%), Positives = 146/247 (59%), Gaps = 3/247 (1%)
Query: 101 VHLVPKDPNDTKNVXXXXXXXXXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLG 160
+ L+ +P D N MY ++ E +G+KV L
Sbjct: 114 LQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWGERRGFKVETLDYLPGDEA 173
Query: 161 GYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESSGRIHTSTATVAVLPEV-DETDIKI 219
G K V LI+G AY LK E GVHR+ R+ +SSGR HTS + V+PE DE DI I
Sbjct: 174 GIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSCEVMPEFNDEIDIDI 233
Query: 220 KPEELKIETFRASGAGGQYVNTTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAK 279
+ E++K++T+RASGAGGQ+VNTT++AVRITH+PT +VV CQ ERSQ +N+++A+K+L AK
Sbjct: 234 RTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTERSQIKNRERAMKMLKAK 293
Query: 280 LKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNF-PQNRVTDHRINLTLYKLQDVLEGK 338
L ++Q E+ + R EQ G S+ IR+Y F P + V DHR N + +Q V++G
Sbjct: 294 LYQRRIEEQQAELDEIRGEQKEIGWGSQ-IRSYVFHPYSMVKDHRTNTEMGNVQAVMDGD 352
Query: 339 LDEIIDA 345
+D IDA
Sbjct: 353 IDTFIDA 359
sp|O44568|RF1M_CAEEL PROBABLE MITOCHONDRIAL PEPTIDE CHAIN RELEASE FACTOR 1 PRECURSOR
(MRF-1) >gi|2736385 (AF039041) similar to prokaryotic
peptide release factors [Caenorhabditis elegans]
Length = 389
Score = 180 bits (452), Expect = 2e-44
Identities = 95/199 (47%), Positives = 126/199 (62%), Gaps = 2/199 (1%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MYQK A WK L + LGG + + + GE Y+++++E+GVHRVQRVPV +S
Sbjct: 161 MYQKLAAVNSWKWDPLQVDNVPLGGVRSALIAVSGEKVYAKMRFEAGVHRVQRVPVNDS- 219
Query: 197 GRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGIV 256
R+HTSTA+++VLPE +E + + + +KIE RASG GGQ VN TAVR+TH TGI
Sbjct: 220 -RMHTSTASISVLPEPEEVSVVVPSDSVKIEAMRASGPGGQNVNKRSTAVRMTHKETGIA 278
Query: 257 VQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNFPQ 316
V C DER Q N Q A K L A L E+I +RK QVG+ R+EKIRTYNF
Sbjct: 279 VHCMDERFQHLNIQIAYKRLAAILMQKQVDAMLEKIVSKRKLQVGSKARAEKIRTYNFQH 338
Query: 317 NRVTDHRINLTLYKLQDVL 335
+RVTDHRI +++ + + L
Sbjct: 339 DRVTDHRIQMSITGVAEFL 357
gi|4154673 (AE001454) PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter
pylori J99]
Length = 363
Score = 176 bits (443), Expect = 2e-43
Identities = 108/344 (31%), Positives = 171/344 (49%), Gaps = 8/344 (2%)
Query: 5 AYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXX 64
A I + +K++++ ++++E P QDV +N L E Y
Sbjct: 21 ALIIKPEKIKQELERIEKEQEDPNFWQDVLKARDTNKEKV---RLNRLLETYQKMKNSLD 77
Query: 65 XXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXX 124
+ D E+ + + ++ ND N
Sbjct: 78 ESVELFELAQNDSDEVTLSLLYEEAPTLEHSVQKVEIEIMLSGENDASNAIITIQPGAGG 137
Query: 125 XXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGV 184
MY ++AE K +K IL G K V +I+GE AY LK E+GV
Sbjct: 138 TESQDWASILYRMYLRWAERKSFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGV 197
Query: 185 HRVQRVPVTESSGRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTE 243
HR+ R+ +++ + HTS A+V + PE+D+ DI+I ++++ + +RASGAGGQ+VN TE
Sbjct: 198 HRLVRISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTE 257
Query: 244 TAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTG 303
+AVRITH PTGIVVQCQ++RSQ +NK ALK+L +KL + K+Q E K ++G G
Sbjct: 258 SAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG 317
Query: 304 ERSEKIRTYNF-PQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
+IR+Y P +V D R N+ ++ +L+G +D I++ +
Sbjct: 318 ---HQIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGV 358
sp|P55999|RF2_HELPY PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|2313254|gb|AAD07236.1|
(AE000537) peptide chain release factor RF-2 (prfB)
[Helicobacter pylori 26695]
Length = 363
Score = 175 bits (439), Expect = 5e-43
Identities = 107/344 (31%), Positives = 171/344 (49%), Gaps = 8/344 (2%)
Query: 5 AYISRLDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQEINELYERYXXXXXXXX 64
A I + +K++++ ++++E P QDV +N L E Y
Sbjct: 21 ALIIKPEKIKQELERIEKEQEDPNFWQDVLKARDTNKEKV---RLNRLLETYQKTKNSLD 77
Query: 65 XXXXXXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXX 124
+ D E+ + + ++ ND N
Sbjct: 78 ESVELFELAQNDNDEVTLSLLYEEAPILENSVQKVEIEIMLSGENDASNAIITIQPGAGG 137
Query: 125 XXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGV 184
MY ++AE +G+K IL G K V +I+GE AY LK E+GV
Sbjct: 138 TESQDWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGV 197
Query: 185 HRVQRVPVTESSGRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTE 243
HR+ R+ +++ + HTS A+V + PE+D+ DI+I ++++ + +R+SGAGGQ+VN TE
Sbjct: 198 HRLVRISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRSSGAGGQHVNKTE 257
Query: 244 TAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTG 303
+AVRITH PTGIVVQCQ++RSQ +NK ALK+L +KL + K+Q E K ++G G
Sbjct: 258 SAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG 317
Query: 304 ERSEKIRTYNF-PQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
+IR+Y P +V D R N ++ +L+G +D I++ +
Sbjct: 318 ---HQIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGV 358
pir||FCECR2 translation releasing factor RF-2 - Escherichia coli >gi|147569
(M11520) peptide chain release factor 2 [Escherichia
coli]
Length = 365
Score = 175 bits (439), Expect = 5e-43
Identities = 94/212 (44%), Positives = 138/212 (64%), Gaps = 6/212 (2%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++AE +G+K I+ ++ + G K V I G+ AY L+ E+GVHRV R +S
Sbjct: 151 MYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRVVRKSPFDSG 210
Query: 197 GRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
GR HTS ++ V PEVD+ DI+I P +L+I+ +R SGAGGQ+VN TE+AVRITHIPTGI
Sbjct: 211 GRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGI 270
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKK--QEEIAKERKEQVGTGERSEKIRTYN 313
V QCQ++RSQ +NK +A+K + AKL + +KK +++ ++ K +G G +IR+Y
Sbjct: 271 VTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG---SQIRSYV 327
Query: 314 FPQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
+R+ D R + Q VL+G LD+ I+A
Sbjct: 328 LDDSRIKDLRTGVETRNTQAVLDGSLDQFIEA 359
sp|P07012|RF2_ECOLI PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|2367172 (AE000372)
peptide chain release factor RF-2 [Escherichia coli]
>gi|228558|prf||1806195A peptide chain-releasing
factor:ISOTYPE=2 [Escherichia coli]
Length = 365
Score = 174 bits (436), Expect = 1e-42
Identities = 93/212 (43%), Positives = 138/212 (64%), Gaps = 6/212 (2%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++AE +G+K I+ ++ + G K V I G+ AY L+ E+GVHR+ R +S
Sbjct: 151 MYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSG 210
Query: 197 GRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
GR HTS ++ V PEVD+ DI+I P +L+I+ +R SGAGGQ+VN TE+AVRITHIPTGI
Sbjct: 211 GRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGI 270
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKK--QEEIAKERKEQVGTGERSEKIRTYN 313
V QCQ++RSQ +NK +A+K + AKL + +KK +++ ++ K +G G +IR+Y
Sbjct: 271 VTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG---SQIRSYV 327
Query: 314 FPQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
+R+ D R + Q VL+G LD+ I+A
Sbjct: 328 LDDSRIKDLRTGVETRNTQAVLDGSLDQFIEA 359
sp|P28353|RF2_SALTY PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|96819|pir||A36480
translation releasing factor RF-2 - Salmonella
typhimurium >gi|154276 (M38590) peptide chain release
factor 2 [Salmonella typhimurium]
Length = 365
Score = 173 bits (434), Expect = 2e-42
Identities = 93/212 (43%), Positives = 137/212 (63%), Gaps = 6/212 (2%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++AE +G+K ++ ++ + G K I GE AY L+ E+GVHR+ R +S
Sbjct: 151 MYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAYGWLRTETGVHRLVRKSPFDSG 210
Query: 197 GRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
GR HTS ++ V PEVD+ DI I P +L+I+ +RASGAGGQ+VN TE+AVRITHIPTGI
Sbjct: 211 GRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGI 270
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKK--QEEIAKERKEQVGTGERSEKIRTYN 313
V QCQ++RSQ +NK +A+K + AKL + +KK +++ ++ K +G G +IR+Y
Sbjct: 271 VTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDTKSDIGWG---SQIRSYV 327
Query: 314 FPQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
+R+ D R + Q VL+G LD+ I+A
Sbjct: 328 LDDSRIKDLRTGVETRNTQAVLDGSLDQFIEA 359
gi|887841 (U28375) peptide chain release factor 2 (RF-2) [Escherichia coli]
Length = 365
Score = 171 bits (430), Expect = 6e-42
Identities = 92/212 (43%), Positives = 136/212 (63%), Gaps = 6/212 (2%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++AE +G+K I+ ++ + G K V I G+ AY L+ E+GVHR R +S
Sbjct: 151 MYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRXVRKSPFDSG 210
Query: 197 GRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
GR HTS ++ V PEVD+ DI+I P +L+I+ +R SGAGGQ+VN TE+AVRITHIPTGI
Sbjct: 211 GRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGI 270
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKK--QEEIAKERKEQVGTGERSEKIRTYN 313
V QCQ++RSQ +NK + +K + AKL + +KK +++ ++ K +G G +IR+Y
Sbjct: 271 VTQCQNDRSQHKNKDQXMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG---SQIRSYV 327
Query: 314 FPQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
+R+ D R + Q VL+G LD+ I+A
Sbjct: 328 LDDSRIKDLRTGVETRNTQAVLDGSLDQFIEA 359
gb|AAF13494.1|AF130466_1 (AF130466) peptide chain release factor 2 [Campylobacter jejuni]
Length = 269
Score = 168 bits (422), Expect = 5e-41
Identities = 92/240 (38%), Positives = 145/240 (60%), Gaps = 5/240 (2%)
Query: 109 NDTKNVXXXXXXXXXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIAL 168
ND KN MY ++ E +G+KV L + G K+V L
Sbjct: 26 NDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFL 85
Query: 169 IEGEGAYSRLKYESGVHRVQRVPVTESSGRIHTSTATVAVLPEVDET-DIKIKPEELKIE 227
++GE AY LK E+G+HR+ R +S+GR HTS ++V V PE+D+ +I+I+ ++++I+
Sbjct: 86 VKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRID 145
Query: 228 TFRASGAGGQYVNTTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERK 287
+RASGAGGQ+VN TE+AVRITH PTGIVVQCQ++RSQ +NK A K+L ++L + K
Sbjct: 146 YYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMK 205
Query: 288 KQEEIAKERKEQVGTGERSEKIRTY-NFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDAL 346
+Q+ K ++G G +IR+Y FP +V D+R ++ ++L+G + ++I+ +
Sbjct: 206 QQDSANTGEKSEIGWG---HQIRSYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGV 262
pir||JN0146 hypothetical protein (div+ 3' region) - Bacillus subtilis
(fragment) >gi|216335|dbj|BAA01123| (D10279) ORF3
[Bacillus subtilis]
Length = 299
Score = 168 bits (421), Expect = 7e-41
Identities = 96/225 (42%), Positives = 133/225 (58%), Gaps = 3/225 (1%)
Query: 101 VHLVPKDPNDTKNVXXXXXXXXXXXXXXXXXXXXXXMYQKYAEEKGWKVSILSSNKTGLG 160
+ L+ +P D N MY ++ E +G+KV L
Sbjct: 75 LQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWGERRGFKVETLDYLPGDEA 134
Query: 161 GYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESSGRIHTSTATVAVLPEV-DETDIKI 219
G K V LI+G AY LK E GVHR+ R+ +SSGR HTS + V+PE DE DI I
Sbjct: 135 GIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSCEVMPEFNDEIDIDI 194
Query: 220 KPEELKIETFRASGAGGQYVNTTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAK 279
+ E++K++T+RASGAGGQ+VNTT++AVRITH+PT +VV CQ ERSQ +N+++A+K+L AK
Sbjct: 195 RTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTERSQIKNRERAMKMLKAK 254
Query: 280 LKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNF-PQNRVTDHR 323
L ++Q E+ + R EQ G S+ IR+Y F P + V DHR
Sbjct: 255 LYQRRIEEQQAELDEIRGEQKEIGWGSQ-IRSYVFHPYSMVKDHR 298
sp|P43918|RF2_HAEIN PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2)
Length = 365
Score = 166 bits (415), Expect = 3e-40
Identities = 89/212 (41%), Positives = 135/212 (62%), Gaps = 6/212 (2%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++AE KG+K ++ + + G K + GE A+ L+ E+G+HR+ R +S+
Sbjct: 151 MYLRWAESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLVRKSPFDSN 210
Query: 197 GRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
R HTS + V PE+D+ DI+I P +L+I+ +RASGAGGQ+VN TE+AVRITH+P+GI
Sbjct: 211 NRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHMPSGI 270
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKK--QEEIAKERKEQVGTGERSEKIRTYN 313
VVQCQ++RSQ +NK +A+K L AKL + +KK ++ ++ K +G G +IR+Y
Sbjct: 271 VVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWG---SQIRSYV 327
Query: 314 FPQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
+R+ D R + Q VL+G LD I+A
Sbjct: 328 LDDSRIKDLRTGVENRNTQAVLDGDLDRFIEA 359
sp|O51101|RF2_BORBU PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|2687953 (AE001120)
peptide chain release factor 2 (prfB) [Borrelia
burgdorferi]
Length = 348
Score = 162 bits (407), Expect = 3e-39
Identities = 91/212 (42%), Positives = 136/212 (63%), Gaps = 8/212 (3%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY +YAE K +K ++ + GG K V I+GE AY LK E G+HR+ R+ +++
Sbjct: 132 MYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRISPFDAA 190
Query: 197 GRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
+ HTS A+V V P +D+ +I IKPE+++I+T+RASGAGGQ+VN T +AVRITHI TGI
Sbjct: 191 KKRHTSFASVFVDPVIDDKIEITIKPEDIRIDTYRASGAGGQHVNKTSSAVRITHIETGI 250
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKKQE--EIAKERKEQVGTGERSEKIRTYN 313
V Q Q +RSQ +NK A+K+L ++L +YY+ K+ E + ++ K+++ G +IR+Y
Sbjct: 251 VTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWG---NQIRSYV 307
Query: 314 F-PQNRVTDHRINLTLYKLQDVLEGKLDEIID 344
F P N V DHR V++G +D I+
Sbjct: 308 FQPYNLVKDHRTKFENSNTTSVMDGNIDNFIE 339
gb|AAC68059.1| (AE001320) Peptide Chain Release Factor 2 [Chlamydia trachomatis]
Length = 369
Score = 158 bits (395), Expect = 7e-38
Identities = 81/207 (39%), Positives = 133/207 (64%), Gaps = 7/207 (3%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++A W++ ++ + G K + + GE AY K ESGVHR+ R+ +S+
Sbjct: 150 MYMRWASSHSWRIEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRISPFDSN 209
Query: 197 GRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
+ HTS A+V V PE+D+ +++I+P +++I+T+R+SGAGGQ+VN T++AVRITH PTGI
Sbjct: 210 AKRHTSFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITHFPTGI 269
Query: 256 VVQCQDERSQFQNKQKALKILYAKL--KDYYERKKQEEIAKERKEQVGTGERSEKIRTYN 313
VV CQ+ERSQ QN++ + +L A++ K ER +++ I ++ K+++ G +IR Y
Sbjct: 270 VVSCQNERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQIRNYV 326
Query: 314 F-PQNRVTDHRINLTLYKLQDVLEGKL 339
F P V D R + +Q +++G+L
Sbjct: 327 FQPYTLVKDVRTGYEVGNIQAMMDGEL 353
sp|P96314|RF2_BACFI PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|1865700|emb|CAA67778|
(X99401) peptide release factor 2 [Bacillus firmus]
Length = 282
Score = 152 bits (381), Expect = 3e-36
Identities = 90/273 (32%), Positives = 138/273 (49%), Gaps = 6/273 (2%)
Query: 10 LDKLQEKYRKLQEELSKPEVIQDVXXXXXXXXXXXXXQE-INELYERYXXXXXXXXXXXX 68
L+ QE+ +L E ++ P+ D +E +N E
Sbjct: 14 LEAKQERMAELDEFMTAPDFWDDQEAAQTVINESNGLKEQVNVFLELEEKYENLEVSYEL 73
Query: 69 XXXSSDKDLRELAEEEVNRXXXXXXXXXXXXXVHLVPKDPNDTKNVXXXXXXXXXXXXXX 128
+D++L E+E+ + L+ +P D N
Sbjct: 74 VKEEADEEL----EKELEAGVKELISRLNDFELQLLLSEPYDKNNAILELHPGAGGTESQ 129
Query: 129 XXXXXXXXMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQ 188
MY +++E++G+KV + G K V LI+G AY LK E GVHR+
Sbjct: 130 DWASMLLRMYTRWSEQRGFKVETMDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLV 189
Query: 189 RVPVTESSGRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVR 247
R+ +SSGR HTS + V+PE+D+ +I I+ E+LK++T+RASGAGGQ++NTT++A+R
Sbjct: 190 RISPFDSSGRRHTSFVSCEVMPELDDNVEIDIRTEDLKVDTYRASGAGGQHINTTDSAIR 249
Query: 248 ITHIPTGIVVQCQDERSQFQNKQKALKILYAKL 280
ITH+PT VV CQ ERSQ +N+ +A+K+L AKL
Sbjct: 250 ITHLPTNTVVTCQSERSQIKNRDQAMKMLKAKL 282
sp|Q53915|RF2_STRCO PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|1402638|dbj|BAA13170|
(D86821) PrfB [Streptomyces coelicolor]
Length = 368
Score = 149 bits (373), Expect = 3e-35
Identities = 85/212 (40%), Positives = 126/212 (59%), Gaps = 6/212 (2%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++AE+ G+K + ++ G K ++ AY L E G HR+ R+ ++
Sbjct: 150 MYLRWAEQHGYKTEVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQ 209
Query: 197 GRIHTSTATVAVLPEVDETD-IKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
GR TS A V +LP V++TD I+I EL+++ +R+SG GGQ VNTT++AVR+THIPTGI
Sbjct: 210 GRRQTSFAGVEILPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGI 269
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAK-ERKEQVGTGERSEKIRTYNF 314
VV CQ+ERSQ QNK A+ +L AKL ER++QEE AK + + G ++R+Y
Sbjct: 270 VVSCQNERSQIQNKATAMNVLQAKL---LERRRQEEQAKMDALKGDGGNSWGNRVRSYVL 326
Query: 315 -PQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
P V D R + + V G++D ++A
Sbjct: 327 HPYQMVKDLRTEHEVGNPEAVFNGEIDGFLEA 358
sp|O83585|RF2_TREPA PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|3322871 (AE001233)
peptide chain release factor 2 (prfB) [Treponema
pallidum]
Length = 368
Score = 149 bits (372), Expect = 4e-35
Identities = 87/212 (41%), Positives = 132/212 (62%), Gaps = 10/212 (4%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++AE + + V I+ ++ GG K V I G A+ LK E+GVHR+ R+ +S+
Sbjct: 145 MYTRWAERRSFCVHIVDLLESE-GGVKSVTLKICGSHAFGFLKGETGVHRLVRISPFDSA 203
Query: 197 GRIHTSTATVAVLPEVDE-TDIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
R HTS + V P +D+ ++ I+ E+++++T+R+ GAGGQ+VN T++AVRITH+PTGI
Sbjct: 204 ARRHTSFTSTYVFPVLDDHVEVHIRSEDMRVDTYRSGGAGGQHVNKTDSAVRITHLPTGI 263
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEE---IAKERKEQVGTGERSEKIRTY 312
VV CQ+ERSQ N+ AL +L A+L Y +KKQ+E A E+K+ + G +IR+Y
Sbjct: 264 VVTCQNERSQISNRATALSLLRARLYAYERQKKQQEHQRFASEKKD-ISWG---NQIRSY 319
Query: 313 NF-PQNRVTDHRINLTLYKLQDVLEGKLDEII 343
F P V DHR + V++G L+ I
Sbjct: 320 VFHPYTMVKDHRSKCETGNIHAVMDGALEPFI 351
sp|Q9ZDQ2|RF2_RICPR PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) >gi|3860836|emb|CAA14736|
(AJ235271) PEPTIDE CHAIN RELEASE FACTOR 2 (prfB)
[Rickettsia prowazekii]
Length = 369
Score = 146 bits (366), Expect = 2e-34
Identities = 85/211 (40%), Positives = 126/211 (59%), Gaps = 3/211 (1%)
Query: 137 MYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHRVQRVPVTESS 196
MY ++AE G+K I++ G K I G+ AY K ESGVHR+ R+ ++
Sbjct: 149 MYLRFAERLGFKTKIINMINGEEVGIKSCTIRIIGKRAYGWFKTESGVHRLVRISPFNAA 208
Query: 197 GRIHTSTATVAVLPEVDET-DIKIKPEELKIETFRASGAGGQYVNTTETAVRITHIPTGI 255
G+ TS A+ + PE+D+ I I+ ++L+I+TFR+SGAGGQ+VNTT++AVRITHIPT
Sbjct: 209 GKRMTSFASSWIYPEIDDDIAITIEDKDLRIDTFRSSGAGGQHVNTTDSAVRITHIPTNT 268
Query: 256 VVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSEKIRTYNF- 314
V QCQ +RSQ +NK +A+K+L AKL +K+ E + K+ + +IR+Y
Sbjct: 269 VTQCQSDRSQHKNKAQAMKMLQAKLYKLEMQKRNENVDKQNANKT-DNSWGHQIRSYVLQ 327
Query: 315 PQNRVTDHRINLTLYKLQDVLEGKLDEIIDA 345
P V D R N + VL+G L++ + A
Sbjct: 328 PYQIVKDLRTNYETSDTKGVLDGNLEDFVSA 358
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.311 0.132 0.353
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73288796
Number of Sequences: 444417
Number of extensions: 2734769
Number of successful extensions: 8165
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7983
Number of HSP's gapped (non-prelim): 96
length of query: 362
length of database: 136,724,657
effective HSP length: 62
effective length of query: 300
effective length of database: 109,170,803
effective search space: 32751240900
effective search space used: 32751240900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 70 (31.7 bits)
