Score E
Sequences producing significant alignments: (bits) Value
gi|2983413 (AE000712) septum site-determining protein MinD ... 512 e-144
gb|AAF10331.1|AE001931_2 (AE001931) septum site-determining... 272 2e-72
sp|Q55900|MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND >... 268 3e-71
sp|Q01464|MIND_BACSU SEPTUM SITE-DETERMINING PROTEIN MIND >... 255 3e-67
sp|O78436|MIND_GUITH PUTATIVE SEPTUM SITE-DETERMINING PROTE... 249 2e-65
gb|AAD36932.1|AE001824_1 (AE001824) septum site-determining... 247 1e-64
sp|P18197|MIND_ECOLI SEPTUM SITE-DETERMINING PROTEIN MIND (... 242 2e-63
gb|AAD07400.1| (AE000551) cell division inhibitor (minD) [H... 240 9e-63
gi|4154852 (AE001468) cell division inhibitor [Helicobacter... 239 2e-62
gb|AAD54881.1|AF137379_104 (AF137379) septum-site determini... 230 1e-59
sp|P56346|MIND_CHLVU PUTATIVE SEPTUM SITE-DETERMINING PROTE... 225 4e-58
emb|CAB53105.1| (AJ245645) cell division inhibitor MinD [Pr... 220 9e-57
gi|2622975 (AE000937) cell division inhibitor [Methanobacte... 155 5e-37
sp|Q57967|Y547_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ054... 154 8e-37
gi|2649916 (AE001056) cell division inhibitor (minD-1) [Arc... 146 2e-34
emb|CAB49485.1| (AJ248284) cell division inhibitor (minD-1)... 126 2e-28
emb|CAB50342.1| (AJ248287) cell division inhibitor (minD-2)... 114 7e-25
sp|Q57633|Y169_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ016... 113 2e-24
dbj|BAA29701| (AP000003) 245aa long hypothetical cell divis... 113 2e-24
gi|1216385 (U36839) orf304 gene product [Treponema pallidum... 98 1e-19
sp|P40742|YLXH_BACSU HYPOTHETICAL 33.2 KD PROTEIN IN FLHF-C... 98 1e-19
gi|2688197 (AE001137) ATP-binding protein (ylxH-1) [Borreli... 97 2e-19
gi|1165254 (U43739) YlxH [Borrelia burgdorferi] 97 2e-19
gb|AAC62540.2| (AF052586) MotR [Pseudomonas aeruginosa] 96 3e-19
gi|4154927 (AE001473) putative [Helicobacter pylori J99] 93 2e-18
gb|AAD08077.1| (AE000611) ATP-binding protein (ylxH) [Helic... 93 2e-18
gb|AAF00142.1|AF149810_1 (AF149810) cell division inhibitor... 92 3e-18
gb|AAD19734.1| (AF124349) ATP-binding protein [Zymomonas mo... 90 2e-17
gi|2983660 (AE000729) septum site-determining protein MinD ... 87 1e-16
sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|2983325 (AE0007... 84 1e-15
sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|325736... 83 2e-15
gi|4154712 (AE001457) putative [Helicobacter pylori J99] 82 7e-15
sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|2313292|gb|AAD0... 81 9e-15
sp|P37522|SOJ_BACSU SOJ PROTEIN >gi|2127177|pir||I40444 pro... 81 9e-15
gi|2622843 (AE000928) nitrogenase reductase related protein... 80 3e-14
dbj|BAA30712| (AP000006) 217aa long hypothetical cell divis... 78 1e-13
emb|CAB49765.1| (AJ248285) MRP-FAMILY PUTATIVE NUCLEOTIDE-B... 77 1e-13
emb|CAA14529| (AJ235270) SOJ PROTEIN (soj) [Rickettsia prow... 77 1e-13
sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|212916... 77 1e-13
dbj|BAA30925.1| (AP000007) 252aa long hypothetical protein ... 76 3e-13
sp|Q58334|Y924_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ092... 75 5e-13
gb|AAD08185.1| (AE000620) SpoOJ regulator (soj) [Helicobact... 75 8e-13
gb|AAB51267.1| (U87804) ParA [Caulobacter crescentus] 74 1e-12
emb|CAB49287.1| (AJ248284) cell division inhibitor (minD-3)... 71 1e-11
gi|4155660 (AE001534) putative [Helicobacter pylori J99] 71 1e-11
sp|P50863|MRP_BACSU MRP PROTEIN HOMOLOG >gi|1177249|emb|CAA... 70 2e-11
sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|699143 (U15180)... 69 4e-11
gb|AAD35987.1|AE001755_10 (AE001755) conserved hypothetical... 68 1e-10
sp|P31856|YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN GIDB-U... 68 1e-10
gi|2688658 (AE001172) ATP-binding protein (ylxH-3) [Borreli... 66 2e-10
gb|AAD45242.1|AF118394_1 (AF118394) putative nucleotide bin... 65 6e-10
gi|2690050 (AE000784) conserved hypothetical protein [Borre... 65 6e-10
gb|AAD36660.1|AE001804_4 (AE001804) conserved hypothetical ... 65 7e-10
gi|3323165 (AE001255) ATP-binding protein (ylxH-2) [Trepone... 64 1e-09
ref|NP_012263.1|YIL003W| Yil003wp >gi|731773|sp|P40558|YIA3... 64 1e-09
gb|AAD18943| (AE001661) chromosome partitioning ATPase [Chl... 64 2e-09
gi|2689983 (AE000794) conserved hypothetical protein [Borre... 63 3e-09
gb|AAC68184.1| (AE001329) chromosome partitioning ATPase-CH... 62 4e-09
gi|2688275 (AE001142) ATP-binding protein (ylxH-2) [Borreli... 62 5e-09
gb|AAC78666.1| (AF094575) Cps19aD [Streptococcus pneumoniae] 62 6e-09
sp|Q93459|MRPL_CAEEL MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING... 62 6e-09
emb|CAA60657.1| (X87202) orfC [Borrelia burgdorferi] 62 6e-09
emb|CAB50199.1| (AJ248287) SOJ PROTEIN homolog [Pyrococcus ... 61 1e-08
emb|CAA06604| (AJ005576) MinD protein [Streptomyces griseus] 61 1e-08
sp|Q60392|Y084_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ008... 60 2e-08
gi|2648607 (AE000970) cell division inhibitor (minD-2) [Arc... 60 2e-08
sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|3261828|emb|CAB... 59 3e-08
sp|Q46631|AMSA_ERWAM AMYLOVORAN BIOSYNTHESIS PUTATIVE MEMBR... 59 3e-08
emb|CAB52836.1| (AL109848) putative partitioning or sporula... 59 5e-08
dbj|BAA29859| (AP000003) 256aa long hypothetical SOJ protei... 59 5e-08
gb|AAF07694.1|AE001582_2 (AE001582) plasmid partition prote... 57 1e-07
gb|AAF01785.1|AF114169_1 (AF114169) nucleotide-binding prot... 57 1e-07
gi|3322545 (AE001208) SpoOJ regulator (soj) [Treponema pall... 57 1e-07
emb|CAA63500| (X92946) soj [Lactococcus lactis] 57 2e-07
ref|NP_002475.1|| nucleotide binding protein 1 (E.coli MinD... 57 2e-07
sp|P72190|YCAB_PSEFR HYPOTHETICAL 30.2 KD PROTEIN IN CAPB 3... 57 2e-07
emb|CAA07397| (AJ006986) cap33fD [Streptococcus pneumoniae] 56 3e-07
gi|3320389 (AF030373) chain length regulator/exporter [Stre... 56 4e-07
gi|2853596 (AF031898) unknown [Pseudomonas putida] 56 4e-07
gi|886319 (L39923) ORF278; hypothetical 30.3 Kd protein; si... 56 4e-07
emb|CAB08981| (Z95558) hypothetical protein Rv0530 [Mycobac... 55 6e-07
emb|CAA57590.1| (X82078) ORF7 [Chlamydophila pneumoniae] 55 6e-07
gb|AAC82813.1| (AF016485) sojB [Halobacterium sp. NRC-1] 55 8e-07
gi|2690133 (AE000788) conserved hypothetical protein [Borre... 55 8e-07
emb|CAB08303| (Z95120) hypothetical protein Rv3213c [Mycoba... 55 8e-07
sp|P45135|MRP_HAEIN MRP PROTEIN HOMOLOG >gi|1075171|pir||A6... 55 8e-07
emb|CAA86248| (Z38113) incomplete orf, len: 160, CAI: 0.09 ... 55 8e-07
emb|CAB43607.1| (AJ239004) cap8D [Streptococcus pneumoniae] 54 1e-06
sp|Q50314|SOJ_MYCPN SOJ PROTEIN HOMOLOG >gi|2127659|pir||S6... 54 1e-06
gb|AAF01786.1|AF114170_1 (AF114170) nucleotide-binding prot... 53 2e-06
gi|2690179 (AE000787) conserved hypothetical protein [Borre... 53 2e-06
gi|2650714 (AE001112) nucleotide-binding protein [Archaeogl... 53 2e-06
emb|CAB10965| (Z98268) hypothetical protein Rv1708 [Mycobac... 53 2e-06
gb|AAF07709.1|AE001584_6 (AE001584) plasmid partition prote... 53 2e-06
gb|AAD10173.1| (AF026471) Cps2D [Streptococcus pneumoniae] 53 2e-06
emb|CAA59776| (X85787) capsular polysaccharide synthesis pr... 53 2e-06
pir||G39999 hypothetical protein 7 - Chlamydia psittaci 53 2e-06
pir||S18148 hypothetical protein 7 - Chlamydia psittaci >gi... 53 2e-06
gi|2648251 (AE000948) nucleotide-binding protein [Archaeogl... 53 3e-06
sp|Q60283|YZ24_METJA HYPOTHETICAL PROTEIN MJECL24 >gi|21292... 52 4e-06
gi|2983413 (AE000712) septum site-determining protein MinD [Aquifex aeolicus]
Length = 262
Score = 512 bits (1304), Expect = e-144
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI
Sbjct: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120
LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV
Sbjct: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEM 180
DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEM
Sbjct: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEM 180
Query: 181 VKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARRLM 240
VKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARRLM
Sbjct: 181 VKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARRLM 240
Query: 241 GESIPLKRYGEKKGLLSRLLGG 262
GESIPLKRYGEKKGLLSRLLGG
Sbjct: 241 GESIPLKRYGEKKGLLSRLLGG 262
gb|AAF10331.1|AE001931_2 (AE001931) septum site-determining protein [Deinococcus
radiodurans]
Length = 276
Score = 272 bits (688), Expect = 2e-72
Identities = 139/265 (52%), Positives = 198/265 (74%), Gaps = 5/265 (1%)
Query: 2 AEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDIL 61
A+VIV+TSGKGGVGKTT TANIG ALA+LG+KV++ID D+GLRNLD+++GLE+R+V+D++
Sbjct: 11 AKVIVVTSGKGGVGKTTTTANIGAALARLGEKVVVIDVDVGLRNLDVVMGLESRVVFDLV 70
Query: 62 DVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILVD 121
DVLEG+ +AL++DKR +L LLPA+Q +KD +D E + + V+ + +D +L+D
Sbjct: 71 DVLEGKCRMNQALIRDKRVENLHLLPASQTRDKDALDPEVFKEVVKGLLEEEGFDRVLID 130
Query: 122 SPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEMV 181
SPAGIE GF+ A +PA+ AL+VVNPEVSS+RDADR+IGLLE+ +++VNR++ +MV
Sbjct: 131 SPAGIESGFRTAAAPAEGALVVVNPEVSSVRDADRIIGLLEAQQITEIRLVVNRLRPKMV 190
Query: 182 KRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARRLMG 241
G MLS++D+VDIL + IGI+PE+ ++ TN GEP VL K A A + TA+R+ G
Sbjct: 191 ASGNMLSIDDMVDILGVKPIGIVPEDEGIIVSTNVGEPAVLG-KTKAGDAFMATAQRIQG 249
Query: 242 ESIPL-KRYGEKKGL---LSRLLGG 262
+ +P K E+KG+ + RL GG
Sbjct: 250 QDVPFPKLTEEEKGIWAAIRRLFGG 274
sp|Q55900|MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND >gi|1001783|dbj|BAA10662|
(D64005) septum site-determining protein MinD
[Synechocystis sp.]
Length = 266
Score = 268 bits (679), Expect = 3e-71
Identities = 144/268 (53%), Positives = 191/268 (70%), Gaps = 8/268 (2%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
M +IV+TSGKGGVGKTT TAN+G ALA+LGKKV+LIDAD GLRNLD++LGLE RIVY
Sbjct: 1 MNRIIVVTSGKGGVGKTTTTANLGAALARLGKKVVLIDADFGLRNLDLLLGLEQRIVYTA 60
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120
+DVL +KALVKDKR +L LLPA Q +KD I+ E+ VE++K+ +DYI++
Sbjct: 61 IDVLADECTIDKALVKDKRLPNLVLLPAAQNRSKDAINAEQMQSLVEQLKD--KFDYIII 118
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEM 180
D PAGIE GF+ AV+PA +A+IV PE+S++RDADRVIGLLE+ D +IVNR++ EM
Sbjct: 119 DCPAGIEAGFRNAVAPAQEAIIVTTPEMSAVRDADRVIGLLEAEDIGKISLIVNRLRPEM 178
Query: 181 VKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPA-SQAIIDTARRL 239
V+ M+SVEDI+D+L +IGI+P++ K++ TN+GEP+V++EK A + ARRL
Sbjct: 179 VQLNQMISVEDILDLLAVPLIGILPDDQKIIISTNKGEPLVMEEKLSVPGLAFQNIARRL 238
Query: 240 MGESIPLKRYGEKKGLL-----SRLLGG 262
G+ IP + L RLLGG
Sbjct: 239 EGQDIPFLDFMAAHNTLLNRIRRRLLGG 266
sp|Q01464|MIND_BACSU SEPTUM SITE-DETERMINING PROTEIN MIND >gi|322178|pir||G45239 cell
division inhibitor minD - Bacillus subtilis >gi|142859
(M96343) MinD protein [Bacillus subtilis] >gi|143216
(M95582) putative [Bacillus subtilis]
>gi|580893|emb|CAA78818| (Z15113) MinD [Bacillus
subtilis] >gi|2635264|emb|CAB14759| (Z99118) ATPase
activator of MinC [Bacillus subtilis]
Length = 268
Score = 255 bits (645), Expect = 3e-67
Identities = 129/262 (49%), Positives = 195/262 (74%), Gaps = 5/262 (1%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
M E IVITSGKGGVGKTT +AN+GTALA LGK+V L+D DIGLRNLD+++GLENRI+YD+
Sbjct: 1 MGEAIVITSGKGGVGKTTTSANLGTALAILGKRVCLVDTDIGLRNLDVVMGLENRIIYDL 60
Query: 61 LDVLEGRVPYEKALVKDKR-GLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYIL 119
+DV+EGR +ALVKDKR L+L+PA Q ++K + E+ V+E+K +DY++
Sbjct: 61 VDVVEGRCKMHQALVKDKRFDDLLYLMPAAQTSDKTAVAPEQIKNMVQELKQ--EFDYVI 118
Query: 120 VDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDK-RNYKVIVNRIKW 178
+D PAGIE+G++ AVS ADKA++V PE+S++RDADR+IGLLE + +++VNRI+
Sbjct: 119 IDCPAGIEQGYKNAVSGADKAIVVTTPEISAVRDADRIIGLLEQEENIEPPRLVVNRIRN 178
Query: 179 EMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARR 238
++K G + +++IV L +++GI+ ++ +++ +N GEPI +D K AS A + ARR
Sbjct: 179 HLMKNGDTMDIDEIVQHLSIDLLGIVADDDEVIKASNHGEPIAMDPKNRASIAYRNIARR 238
Query: 239 LMGESIPLKRYGEK-KGLLSRL 259
++GES+PL+ E+ KG+++++
Sbjct: 239 ILGESVPLQVLEEQNKGMMAKI 260
sp|O78436|MIND_GUITH PUTATIVE SEPTUM SITE-DETERMINING PROTEIN MIND
>gi|3602960|gb|AAC35621| (AF041468) inhibition of cell
division factor [Guillardia theta]
Length = 269
Score = 249 bits (629), Expect = 2e-65
Identities = 134/261 (51%), Positives = 182/261 (69%), Gaps = 4/261 (1%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
MA ++VITSGKGGVGKTT+TAN+G ALA+LG + LIDADIGLRNLD++LGLENR++Y
Sbjct: 1 MARIVVITSGKGGVGKTTVTANLGMALAQLGYRTALIDADIGLRNLDLLLGLENRVIYTA 60
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120
L+VL G E+AL+KDKR +L LLPA Q NKD + E+ V + N +YDY+L+
Sbjct: 61 LEVLSGECRLEQALIKDKRQPNLVLLPAAQNRNKDSVTEEQMKFLVNLLVN--DYDYLLI 118
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEM 180
D PAGIE GF A+ PA +A++V PE++++RDADRVIGLLE+ + K++VNR++ +M
Sbjct: 119 DCPAGIETGFHNAIGPAQEAIVVTTPEIAAVRDADRVIGLLEANGIKQIKLLVNRLRPQM 178
Query: 181 VKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFP-ASQAIIDTARRL 239
VK M+SV D+ +IL +IG+IPE+ ++ TNRGEP+VL++ A TA RL
Sbjct: 179 VKANDMMSVADVREILAIPLIGVIPEDECVIVSTNRGEPLVLEKNLSLPGLAFEHTACRL 238
Query: 240 MGESIP-LKRYGEKKGLLSRL 259
G+ I L +G L RL
Sbjct: 239 DGQEIEFLDLQSYSRGPLKRL 259
gb|AAD36932.1|AE001824_1 (AE001824) septum site-determining protein MinD [Thermotoga
maritima]
Length = 271
Score = 247 bits (623), Expect = 1e-64
Identities = 134/263 (50%), Positives = 185/263 (69%), Gaps = 6/263 (2%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
M VIV+TSGKGGVGKTT+TAN+G ALAKLG+KV LIDADIGL+NLD++LGLENRIVY +
Sbjct: 1 MGNVIVVTSGKGGVGKTTITANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYTM 60
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120
+DV+ G+V ++ALVK K +L+LLPA+Q A K++I V+E+ ++DYI++
Sbjct: 61 IDVVNGKVSPQEALVKHKMLKNLYLLPASQIATKEMISPNDMKAIVKEL--IPHFDYIII 118
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYK--VIVNRIKW 178
DSPAGIE+GF+ AV+PA++ L+V PE+ +I DADRVIGLLE+ + K VI+NR K
Sbjct: 119 DSPAGIERGFRNAVAPAERVLVVTTPELPAISDADRVIGLLENFGFSDEKINVIINRFKP 178
Query: 179 EMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARR 238
MVK+G ML+ +DI L EII +IP+ ++ +N G P+ L+ S+ + ARR
Sbjct: 179 HMVKKGEMLTTDDIKHTLSLEIIAVIPDSEDIIVASNTGIPVSLNGNSRISKNFENLARR 238
Query: 239 LMGESIPLKR--YGEKKGLLSRL 259
+ GE +PL+ KGL+ L
Sbjct: 239 IRGEGVPLENDFVTVSKGLIDTL 261
sp|P18197|MIND_ECOLI SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|72935|pir||CCECID cell division inhibitor minD -
Escherichia coli >gi|146867 (J03153) MinD protein
[Escherichia coli] >gi|1651574|dbj|BAA36009| (D90751)
Cell division inhibitor MinD. [Escherichia coli]
>gi|1651578|dbj|BAA36022| (D90752) Cell division
inhibitor MinD. [Escherichia coli] >gi|1787423
(AE000216) cell division inhibitor, a membrane ATPase,
activates minC [Escherichia coli]
Length = 270
Score = 242 bits (611), Expect = 2e-63
Identities = 125/271 (46%), Positives = 188/271 (69%), Gaps = 10/271 (3%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
MA +IV+TSGKGGVGKTT +A I T LA+ GKK ++ID DIGLRNLD+I+G E R+VYD
Sbjct: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF 60
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120
++V++G +AL+KDKR +L++LPA+Q +KD + E K ++++K + ++++I+
Sbjct: 61 VNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLK-AMDFEFIVC 119
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKR--------NYKVI 172
DSPAGIE G +A+ AD+A+I NPEVSS+RD+DR++G+L S +R ++
Sbjct: 120 DSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLL 179
Query: 173 VNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAI 232
+ R V RG MLS+ED+++IL+ +++G+IPE+ ++ +N+GEP++LD A +A
Sbjct: 180 LTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAY 239
Query: 233 IDTARRLMGESIPLKRY-GEKKGLLSRLLGG 262
DT RL+GE P + EKKG L RL GG
Sbjct: 240 ADTVERLLGEERPFRFIEEEKKGFLKRLFGG 270
gb|AAD07400.1| (AE000551) cell division inhibitor (minD) [Helicobacter pylori
26695]
Length = 268
Score = 240 bits (606), Expect = 9e-63
Identities = 125/268 (46%), Positives = 184/268 (68%), Gaps = 10/268 (3%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
MA V+ ITSGKGGVGK+T TAN+ LA+ GKKV+ +D DIGLRNLDMILGLENRIVYD+
Sbjct: 1 MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDV 60
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120
+DV+E +AL+ DK+ +L L A+Q +K+++D EK + ++ ++DYIL+
Sbjct: 61 VDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALR--ADFDYILI 118
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYK-------VIV 173
DSPAGIE GF+ A+ AD AL+VV PEVSS+RD+DRV+G++++ R K +I+
Sbjct: 119 DSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGMEVHKHLII 178
Query: 174 NRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAII 233
NR+K E+V G M+S+E+++ IL +IGIIPE+ ++ TN+GEP++ + +++A
Sbjct: 179 NRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTD-CESAKAYQ 237
Query: 234 DTARRLMGESIPLKRYGEKKGLLSRLLG 261
RR++GE + + K+G S L G
Sbjct: 238 RITRRILGEEVEYVEFKAKRGFFSALKG 265
gi|4154852 (AE001468) cell division inhibitor [Helicobacter pylori J99]
Length = 268
Score = 239 bits (604), Expect = 2e-62
Identities = 125/268 (46%), Positives = 184/268 (68%), Gaps = 10/268 (3%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
MA V+ ITSGKGGVGK+T TAN+ LA+ GKKV+ +D DIGLRNLDMILGLENRIVYD+
Sbjct: 1 MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDV 60
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120
+DV+E +AL+ DK+ +L L A+Q +K+++D EK + ++ ++DYIL+
Sbjct: 61 VDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALR--ADFDYILI 118
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKR-------NYKVIV 173
DSPAGIE GF+ A+ AD AL+VV PEVSS+RD+DRVIG++++ R + +I+
Sbjct: 119 DSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKSGEEVHKHLII 178
Query: 174 NRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAII 233
NR+K E+V G M+S+E+++ IL +IGIIPE+ ++ TN+GEP++ + +++A
Sbjct: 179 NRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTD-CESAKAYQ 237
Query: 234 DTARRLMGESIPLKRYGEKKGLLSRLLG 261
RR++GE + + K+G S L G
Sbjct: 238 RITRRILGEEVEYVEFKAKRGFFSALKG 265
gb|AAD54881.1|AF137379_104 (AF137379) septum-site determining protein [Nephroselmis olivacea]
>gi|5880815|gb|AAD54908.1|AF137379_131 (AF137379)
septum-site determining protein [Nephroselmis olivacea]
Length = 274
Score = 230 bits (580), Expect = 1e-59
Identities = 117/243 (48%), Positives = 172/243 (70%), Gaps = 2/243 (0%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDV 63
VIVITSGKGGVGKTT TAN+G +A+LG +V LIDADIGLRNLD++LGLENR+VY ++V
Sbjct: 15 VIVITSGKGGVGKTTATANLGMCIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAMEV 74
Query: 64 LEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILVDSP 123
+EG+ E+AL++DKR +L +L ++ + + + V+ IK G Y YIL+D P
Sbjct: 75 IEGQCRLEQALIRDKRWKNLSMLAMSKNRQRYNMTRKNMMMIVDSIKERG-YQYILIDCP 133
Query: 124 AGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEMVKR 183
AGI+ GF A++PAD+A++V PE+++IRDADRV GLLE+ D N +++ NR++ EM+++
Sbjct: 134 AGIDAGFVNAIAPADEAILVTTPEITAIRDADRVAGLLEANDFYNVRLVANRVRPEMIQQ 193
Query: 184 GAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFP-ASQAIIDTARRLMGE 242
M+SV+D+ ++ ++G IPE+ ++ TNRGEP+V + A A + ARRL+G
Sbjct: 194 NDMMSVDDVQGMIGVPLLGAIPEDKNVIISTNRGEPLVCQKTITLAGVAFEEAARRLVGL 253
Query: 243 SIP 245
P
Sbjct: 254 PSP 256
sp|P56346|MIND_CHLVU PUTATIVE SEPTUM SITE-DETERMINING PROTEIN MIND
>gi|2224467|dbj|BAA57951| (AB001684) cell division
inhibitor MinD [Chlorella vulgaris]
Length = 282
Score = 225 bits (567), Expect = 4e-58
Identities = 112/243 (46%), Positives = 175/243 (71%), Gaps = 2/243 (0%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
+ VIVITSGKGGVGKTT TAN+G ++A+LG +V LIDADIGLRNLD++LGLENR++Y
Sbjct: 15 LERVIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTA 74
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILV 120
+D++EG+ ++AL++DKR +L LL ++ K + + ++ +K G + ++L+
Sbjct: 75 MDIVEGQCRLDQALIRDKRWKNLALLAISKNRQKYNVTRKNMQNLIDSVKELG-FQFVLI 133
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEM 180
D PAGI+ GF A++ A +A+IV PE+++IRDADRV GLLE+ N K++VNR++ +M
Sbjct: 134 DCPAGIDVGFINAIASAQEAVIVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDM 193
Query: 181 VKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQ-AIIDTARRL 239
+++ M+SV D+ ++L ++G IPE+ ++ TN+GEP+VL++K S A + ARRL
Sbjct: 194 IQKNDMMSVRDVQEMLGIPLLGAIPEDTSVIISTNKGEPLVLNKKLTLSGIAFENAARRL 253
Query: 240 MGE 242
+G+
Sbjct: 254 IGK 256
emb|CAB53105.1| (AJ245645) cell division inhibitor MinD [Prototheca wickerhamii]
Length = 359
Score = 220 bits (555), Expect = 9e-57
Identities = 115/240 (47%), Positives = 170/240 (69%), Gaps = 2/240 (0%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDV 63
VIVITSGKGGVGKTT TAN+G ++A+ G +V LIDADIGLRNLD++LGLENRI + +D+
Sbjct: 95 VIVITSGKGGVGKTTTTANLGMSIARFGYRVALIDADIGLRNLDLLLGLENRITFTAMDI 154
Query: 64 LEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILVDSP 123
+EGR ++ALV++KR +L LL ++ K + + + V IK G + IL+D P
Sbjct: 155 IEGRCRLDQALVREKRWKNLALLAVSKNHQKYNVTQQHMRQLVFSIKELG-INSILIDCP 213
Query: 124 AGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEMVKR 183
AGI+ GF A++PA +A+IV PE+++IRDADRV GLLE+ + K+++NR++ +M++
Sbjct: 214 AGIDVGFINAIAPAQEAIIVTTPEITAIRDADRVAGLLEANTIVDTKLLLNRVRMDMIQN 273
Query: 184 GAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQ-AIIDTARRLMGE 242
MLS+ D+ + L ++G IPE+ ++ TN+GEP+VLD+K S A + ARRL+G+
Sbjct: 274 STMLSIMDVQETLGIPLLGAIPEDTNVIISTNKGEPLVLDKKLTLSGIAFENAARRLIGK 333
gi|2622975 (AE000937) cell division inhibitor [Methanobacterium
thermoautotrophicum]
Length = 259
Score = 155 bits (387), Expect = 5e-37
Identities = 98/270 (36%), Positives = 165/270 (60%), Gaps = 24/270 (8%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
M VI + SGKGGVGKTT+TAN+G AL+ G++V+++DADI + NL++ILG+E + V +
Sbjct: 1 MTRVITVASGKGGVGKTTITANLGVALSTYGERVVVLDADIAMANLELILGMEGKSV-TL 59
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKW-NKTVEEIKNSGNY---- 115
DVL G E A+ + G+ ++PA I +E N ++ ++++ Y
Sbjct: 60 HDVLAGNASIEDAVYEGPNGVR--VVPAG-------ISLEGLRNVKLDRLEDALAYLIED 110
Query: 116 -DYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVN 174
D +L+D+PAG+EK A++ AD+ L+V PEV SI DA + + +D V++N
Sbjct: 111 TDILLIDAPAGLEKDAVAALAAADELLLVTTPEVPSISDALKTKIVASKLDINIIGVVIN 170
Query: 175 RIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVL-DEKFPASQAII 233
R +++ LSVE++ IL+ +I +IP++P++ GEPIV+ + K PAS A++
Sbjct: 171 REQYDK----TFLSVEEVETILEVPVIAVIPDDPEVSRAAAFGEPIVIKNPKSPASNALM 226
Query: 234 DTARRLMGESI-PLKRYGEKKGLLSRLLGG 262
+ A L+GE P++ +K+G++++L+ G
Sbjct: 227 ELAADLIGEEYQPIE--PDKQGVIAKLISG 254
sp|Q57967|Y547_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0547 >gi|2144955|pir||C64368
cell division inhibitor MinD homolog MJ0547 -
Methanococcus jannaschii >gi|1591252 (U67504) cell
division inhibitor minD [Methanococcus jannaschii]
Length = 264
Score = 154 bits (385), Expect = 8e-37
Identities = 96/269 (35%), Positives = 158/269 (58%), Gaps = 21/269 (7%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
MA I I SGKGG GKTT++AN+ ALAK GKKV ++DADI + NL++I+GLE + V +
Sbjct: 5 MAIAIAIASGKGGTGKTTISANLAVALAKFGKKVAVLDADIAMANLELIMGLEGKPV-TL 63
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKT----VEEIKNSGN-- 114
DVL G+ + A+ + G + ++PA + +EK+ + +EE+ + +
Sbjct: 64 NDVLAGKADIKDAIYEGPEG--VLVIPAG-------VSLEKFRRAKPEKLEEVLKAIHDL 114
Query: 115 YDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVN 174
+ +++D PAGI K IA+S AD ++VVNPE+SSI DA ++I + + + IVN
Sbjct: 115 VEILIIDCPAGIGKETLIAISSADGLIVVVNPEISSISDALKIIAITKRLGTDIIGAIVN 174
Query: 175 RIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEP-IVLDEKFPASQAII 233
R+ E + L V+ I IL+ +IG++PE+P + G P +++ PA+QAI+
Sbjct: 175 RVSNESTE----LGVKAIETILEVPVIGVVPEDPHVRKAAAFGTPLVIMYPDSPAAQAIM 230
Query: 234 DTARRLMGESIPLKRYGEKKGLLSRLLGG 262
+ A +L+G + +K+ +S+ + G
Sbjct: 231 EIAAKLIGAKYEAQLKKKKESFISKFIKG 259
gi|2649916 (AE001056) cell division inhibitor (minD-1) [Archaeoglobus
fulgidus]
Length = 263
Score = 146 bits (364), Expect = 2e-34
Identities = 96/271 (35%), Positives = 160/271 (58%), Gaps = 25/271 (9%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
M I + SGKGG GKTT+TAN+G ALA+LG V ++DADI + NL++ILG+E + +
Sbjct: 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEG-LPVTL 59
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPAN------QRANKDVIDIEKWNKTVEEIKNSGN 114
+VL G ++A+ G+ ++PA ++AN EK + +I S
Sbjct: 60 QNVLAGEARIDEAIYVGPGGVK--VVPAGVSLEGLRKANP-----EKLEDVLTQIMES-- 110
Query: 115 YDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVN 174
D +L+D+PAG+E+ IA++ A + L+VVNPE+SSI D + + E + + V+VN
Sbjct: 111 TDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVN 170
Query: 175 RIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVL-DEKFPASQAII 233
RI G ++ +I IL+A++IG+IPE+P++ G+P+VL PA++AI+
Sbjct: 171 RI----TTLGIEMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIV 226
Query: 234 DTARRLMG---ESIPLK-RYGEKKGLLSRLL 260
+ A + G + +P + + +K+G L+++L
Sbjct: 227 ELANYIAGGAKKKVPAEVKEKKKEGALAKML 257
emb|CAB49485.1| (AJ248284) cell division inhibitor (minD-1) [Pyrococcus abyssi]
Length = 260
Score = 126 bits (314), Expect = 2e-28
Identities = 85/239 (35%), Positives = 133/239 (55%), Gaps = 11/239 (4%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
IV SGKGG GKTT ANIG ALA+ GK V+LIDADI + NL +ILG+E+ I + DVL
Sbjct: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMED-IPVTLHDVL 64
Query: 65 EGRVPYEKALVKDKRGLSLWLLPANQRANK-DVIDIEKWNKTVEEIKNSGNYDYILVDSP 123
G + A+ + G+ ++P K E+ + EI G D+IL+D+P
Sbjct: 65 AGEADLKDAIYEGPAGVK--VIPGGLSLEKIKKARAERLRDLIREISQMG--DFILIDAP 120
Query: 124 AGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEMVKR 183
AG+E A+ + +IV NPE+++I D+ + + E + I+NR+ E +
Sbjct: 121 AGLELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGAILNRVTSEKTE- 179
Query: 184 GAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVL-DEKFPASQAIIDTARRLMG 241
LS E+I +L+ ++G +PE+P++ + G P+V+ + PA+ A + A +L G
Sbjct: 180 ---LSREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKNPTSPAAIAYKEIAAKLAG 235
emb|CAB50342.1| (AJ248287) cell division inhibitor (minD-2) [Pyrococcus abyssi]
Length = 245
Score = 114 bits (283), Expect = 7e-25
Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 9/222 (4%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
MA +I I SGKGG GKTT+TAN+ AL ++GKKVL +D D+ + NL ++LG+++ + +
Sbjct: 1 MARIISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDD-VDVTL 59
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLP-ANQRANKDVIDIEKWNKTVEEIKNSGNYDYIL 119
DVL G + A+ + ++++LP A + D K + ++ +K G+YD+IL
Sbjct: 60 HDVLAGEAKLQDAIYMTQFD-NVYVLPGAVDWEHVMKADPRKLPEVIKSLK--GDYDFIL 116
Query: 120 VDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWE 179
+D PAG++ A+ ++AL+V NPE+S + D +V +L I+NR
Sbjct: 117 IDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLRKAGLAILGFILNRYG-- 174
Query: 180 MVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIV 221
+ + + D++ ++ +IPE+P + + T G P V
Sbjct: 175 --RTENDIPPDAAQDVMDVPLLAVIPEDPAIREGTLEGIPAV 214
sp|Q57633|Y169_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0169 >gi|2144954|pir||B64321
cell division inhibitor MinD homolog MJ0169 -
Methanococcus jannaschii >gi|1590922 (U67474) cell
division inhibitor minD [Methanococcus jannaschii]
Length = 263
Score = 113 bits (280), Expect = 2e-24
Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 11/243 (4%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDV 63
+I I SGKGGVGKTT +A++ ALAKLGKKVL ID DI + NL ++ +E + + +V
Sbjct: 5 IITIASGKGGVGKTTTSASLAVALAKLGKKVLAIDGDISMANLGILFNMEKK-KPSLHEV 63
Query: 64 LEGRVPYEKALVKDKRGLSLWLLPAN-QRANKDVIDIEKWNKTVEEIKNSGNYDYILVDS 122
L A+ K K G +++LP + DI+ V E+ + ++DY+++D+
Sbjct: 64 LSEEADVRDAIYKHKTG--VYVLPTSLSLEGYKKSDIDLLPDVVNEV--ADDFDYVIIDA 119
Query: 123 PAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEMVK 182
PAG+ + ++ ADK L+VV PE+ SI DA R+ E V++NR+ + +
Sbjct: 120 PAGLNREMATHLAIADKLLLVVTPEMFSIIDAVRLKESAEMAGTPLMGVVLNRVGRDFGE 179
Query: 183 RGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEK-FPASQAIIDTARRLMG 241
G ++I ++K +++ +PE+ + + ++ K PASQA + A + G
Sbjct: 180 MGR----DEIEMLIKGKVLVEVPEDENVRSAALKKMSVIEYRKNSPASQAYMKLASIIAG 235
Query: 242 ESI 244
I
Sbjct: 236 VPI 238
dbj|BAA29701| (AP000003) 245aa long hypothetical cell division inhibitor MinD
[Pyrococcus horikoshii]
Length = 245
Score = 113 bits (279), Expect = 2e-24
Identities = 71/222 (31%), Positives = 123/222 (54%), Gaps = 9/222 (4%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
M +I I SGKGG GKTT+TAN+ AL ++G+KVL +D D+ + NL ++LG+++ + +
Sbjct: 1 MTRIISIVSGKGGTGKTTVTANLSVALGEMGRKVLAVDGDLTMANLSLVLGVDD-VNITL 59
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLP-ANQRANKDVIDIEKWNKTVEEIKNSGNYDYIL 119
DVL G E A+ + ++++LP A + D K + ++ +K G YD+IL
Sbjct: 60 HDVLAGDAKLEDAIYMTQFE-NVYILPGAVDWEHVIKADPRKLPEVIKSLK--GKYDFIL 116
Query: 120 VDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWE 179
+D PAG++ A+ ++A++V NPE+S + D +V +L+ I+NR
Sbjct: 117 IDCPAGLQLDAMSAMLSGEEAILVTNPEISCLTDTMKVGMVLKKAGLAILGFILNRYG-- 174
Query: 180 MVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIV 221
+ + E D++ ++ +IPE+P + + T G P V
Sbjct: 175 --RSERDIPPEAAQDVMDVPLLAVIPEDPVIREGTLEGIPAV 214
gi|1216385 (U36839) orf304 gene product [Treponema pallidum] >gi|3323014
(AE001244) ATP-binding protein (ylxH-1) [Treponema
pallidum]
Length = 304
Score = 97.5 bits (239), Expect = 1e-19
Identities = 76/268 (28%), Positives = 139/268 (51%), Gaps = 18/268 (6%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDV 63
V+V+TSGKGGVGKT + N+ A +GKKV+LIDAD+GL N+++I+ + + Y++ V
Sbjct: 41 VVVVTSGKGGVGKTNIATNMAIAYGYMGKKVVLIDADLGLANVNVIMNVVPQ--YNLYHV 98
Query: 64 LEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILVDSP 123
++ + ++ G+ L + A+ + ++ E+ ++E+ + D I++D+
Sbjct: 99 IKKQKKMSDIIIDTNFGIKL-IAGASGFSKIANLNEEERAAFIQELYSLSETDIIIIDTS 157
Query: 124 AGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLES-MDKR--NYKVIVNRIKWEM 180
AG+ K V+ AD ++V E ++I DA +I ++ + +D R N K+IVNR+
Sbjct: 158 AGVSKNVVSFVASADDVIVVTTAEPTAITDAYGMIKIIATEVDNRDMNLKMIVNRV--NS 215
Query: 181 VKRGAMLSVEDIVDI------LKAEIIGIIPEEPKLVDFTNRGEPIVLDE-KFPASQAII 233
G +S E ++ I LK + +G I ++ + R P ++ E + AS +
Sbjct: 216 AAEGRRIS-ERMIQIAAQFLNLKLDYLGFIYDDTSVGASVLRQVPFLIHEPRGKASVCLR 274
Query: 234 DTARRLMGESIPLKRYGEKKGLLSRLLG 261
+L E + G G + R+ G
Sbjct: 275 HIVAKL--EKTEIAETGGLSGFIRRIFG 300
sp|P40742|YLXH_BACSU HYPOTHETICAL 33.2 KD PROTEIN IN FLHF-CHEB INTERGENIC REGION
(ORF298) >gi|2127066|pir||I40434 hypothetical protein
298 (che/fla locus) - Bacillus subtilis
>gi|580903|emb|CAA52034| (X73682) orf298 [Bacillus
subtilis] >gi|2634013|emb|CAB13514| (Z99112) similar to
flagellar biosynthesis switch protein [Bacillus
subtilis]
Length = 298
Score = 97.5 bits (239), Expect = 1e-19
Identities = 66/181 (36%), Positives = 99/181 (54%), Gaps = 11/181 (6%)
Query: 2 AEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDIL 61
A+ + + SGKGGVGK+ +T N+ AL GKKVLLID DIG+ N+D+++G N I+
Sbjct: 31 AKTLAVISGKGGVGKSNITLNMALALQDKGKKVLLIDLDIGMGNIDILIG--NSSSATII 88
Query: 62 DVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDV---IDIEKWNKTVEEIKNS-GNYDY 117
DVL R P ++L +GL + DV +D KW E+ ++ +DY
Sbjct: 89 DVLTDRKPLLQSLSVGPKGLRY----ISGGTGLDVMFQLDQRKWTFFANELSHALSQFDY 144
Query: 118 ILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDA-DRVIGLLESMDKRNYKVIVNRI 176
+L D AG+ K + A+ LI+ PE ++I DA V L+ + +K + KV VNR
Sbjct: 145 VLFDMGAGLSKDQLPFILSAEDILIITTPEPTAIMDAYSAVKHLVLTENKLSMKVAVNRC 204
Query: 177 K 177
+
Sbjct: 205 R 205
gi|2688197 (AE001137) ATP-binding protein (ylxH-1) [Borrelia burgdorferi]
Length = 295
Score = 96.7 bits (237), Expect = 2e-19
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 8/223 (3%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
I ++SGKGGVGK+ + + ++LGKKVL++DADIG+ N++++LG+ + Y I ++
Sbjct: 34 IAVSSGKGGVGKSNIAIGLALKYSELGKKVLILDADIGMANVNILLGVIPK--YSIYHMI 91
Query: 65 EGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILVDSPA 124
+ + K + + L + D+ D++ NK ++E+ YD +++D+ A
Sbjct: 92 AQSRDIREVITKTEYNIDLLAGASGTMELLDLSDVDV-NKFIKELLKIYEYDIVVIDTSA 150
Query: 125 GIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLL--ESMDKRNYKVIVNRIKWEMVK 182
GI + + +D +IV PE +SI DA +I +L + + +N ++IVNR+
Sbjct: 151 GISRQVISFLLSSDDVVIVTTPEPTSITDAYGIIKVLSYKMENLKNLRLIVNRVANVSEA 210
Query: 183 RGAMLSVEDIVD---ILKAEIIGIIPEEPKLVDFTNRGEPIVL 222
+G V DI L + +G I E+ + + +P VL
Sbjct: 211 KGVAKKVIDISGQFLNLNIDYLGHIYEDQNIRSSVFKQKPFVL 253
gi|1165254 (U43739) YlxH [Borrelia burgdorferi]
Length = 281
Score = 96.7 bits (237), Expect = 2e-19
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 8/223 (3%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
I ++SGKGGVGK+ + + ++LGKKVL++DADIG+ N++++LG+ + Y I ++
Sbjct: 20 IAVSSGKGGVGKSNIAIGLALKYSELGKKVLILDADIGMANVNILLGVIPK--YSIYHMI 77
Query: 65 EGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILVDSPA 124
+ + K + + L + D+ D++ NK ++E+ YD +++D+ A
Sbjct: 78 AQSRDIREVITKTEYNIDLLAGASGTMELLDLSDVDV-NKFIKELLKIYEYDIVVIDTSA 136
Query: 125 GIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLL--ESMDKRNYKVIVNRIKWEMVK 182
GI + + +D +IV PE +SI DA +I +L + + +N ++IVNR+
Sbjct: 137 GISRQVISFLLSSDDVVIVTTPEPTSITDAYGIIKVLSYKMENLKNLRLIVNRVANVSEA 196
Query: 183 RGAMLSVEDIVD---ILKAEIIGIIPEEPKLVDFTNRGEPIVL 222
+G V DI L + +G I E+ + + +P VL
Sbjct: 197 KGVAKKVIDISGQFLNLNIDYLGHIYEDQNIRSSVFKQKPFVL 239
gb|AAC62540.2| (AF052586) MotR [Pseudomonas aeruginosa]
Length = 275
Score = 96.0 bits (235), Expect = 3e-19
Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 11/265 (4%)
Query: 3 EVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILD 62
+VI +T GKGGVGKT ++ N+ ALA LG++V+L+DAD+GL N+D++LGL + + D
Sbjct: 7 QVIAVTGGKGGVGKTNVSVNLSLALADLGRRVMLLDADLGLANVDVLLGLSPK--RTLAD 64
Query: 63 VLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILVDS 122
V+EG +++ G+ + + ++ + ++ S N D ++VD+
Sbjct: 65 VIEGECDLRDVILQGPGGIRIVPAASGTQSMVHLTPMQHAGLIQAFSDISDNIDVLVVDT 124
Query: 123 PAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLL-ESMDKRNYKVIVNRIKWEMV 181
AGI V A + L+VV E +SI DA +I LL ++V+ N
Sbjct: 125 AAGIGDSVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRHYGMTRFRVLANMAHSPQE 184
Query: 182 KRGAMLSVEDIVD---ILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAII---DT 235
R + + D + + +G IP + + + + E FP S+A +
Sbjct: 185 GRNLFAKLTKVTDRFLDVALQYVGAIPYDESVRKAVQKQRSVY--EAFPRSKASLAFRAV 242
Query: 236 ARRLMGESIPLKRYGEKKGLLSRLL 260
A+++ +P G + + RL+
Sbjct: 243 AQKVDSWPLPANPRGHLEFFVERLV 267
gi|4154927 (AE001473) putative [Helicobacter pylori J99]
Length = 294
Score = 93.2 bits (228), Expect = 2e-18
Identities = 61/172 (35%), Positives = 97/172 (55%), Gaps = 3/172 (1%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
I ITSGKGGVGK+ ++AN+ +L K G KV + DADIGL NLD+I G++ +IL L
Sbjct: 30 IAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTH--KNILHAL 87
Query: 65 EGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILVDSPA 124
+G ++ + + + GL L + + K + E ++ V+E + DYI++D+ A
Sbjct: 88 KGEAKLQEIICEIEPGLCLIPGDSGEEILKYISGAEALDRFVDEEGVLSSLDYIVIDTGA 147
Query: 125 GIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRI 176
GI Q ++ +D +IV P+ S+I DA I + S +K +I N +
Sbjct: 148 GIGATTQAFLNASDCVVIVTTPDPSAITDAYACI-KINSKNKDELFLIANMV 198
gb|AAD08077.1| (AE000611) ATP-binding protein (ylxH) [Helicobacter pylori 26695]
Length = 294
Score = 93.2 bits (228), Expect = 2e-18
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 3/172 (1%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
I ITSGKGGVGK+ ++AN+ +L K G KV + DADIGL NLD+I G++ +IL L
Sbjct: 30 IAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTH--KNILHAL 87
Query: 65 EGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDYILVDSPA 124
+G ++ + + + GL L + + K + E ++ V+E + DYI+VD+ A
Sbjct: 88 KGEAKLQEIICEIEPGLCLIPGDSGEEILKYISGAEALDQFVDEEGVLSSLDYIVVDTGA 147
Query: 125 GIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRI 176
GI Q ++ +D +IV P+ S+I DA I + S +K +I N +
Sbjct: 148 GIGATTQAFLNASDCVVIVTTPDPSAITDAYACI-KINSKNKDELFLIANMV 198
gb|AAF00142.1|AF149810_1 (AF149810) cell division inhibitor MinD homolog [Oryza sativa]
Length = 179
Score = 92.4 bits (226), Expect = 3e-18
Identities = 54/127 (42%), Positives = 81/127 (63%), Gaps = 7/127 (5%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDV 63
V+V+TSGKGGVGKTT TAN+ +LA+L + +DAD GLRNLD++LGLENR+ DV
Sbjct: 38 VVVVTSGKGGVGKTTTTANLAASLARLSLSAVAVDADAGLRNLDLLLGLENRVHLTAADV 97
Query: 64 LEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTV----EEIKNSGNYD-YI 118
L G ++ALV+ + L LL ++ +K + + +KT+ + ++ + N +I
Sbjct: 98 LAGDCRLDQALVRHRALHDLQLLCLSKPRSK--LPLAFGSKTLTWVADALRRAANPPAFI 155
Query: 119 LVDSPAG 125
L+D PAG
Sbjct: 156 LIDCPAG 162
gb|AAD19734.1| (AF124349) ATP-binding protein [Zymomonas mobilis]
Length = 273
Score = 90.1 bits (220), Expect = 2e-17
Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 12/235 (5%)
Query: 3 EVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILD 62
+VI + SGKGGVGKT + AN+ AL+K+ ++ LL+D D+G+ + ++LG+ + I D
Sbjct: 10 QVIAVASGKGGVGKTNVIANLTAALSKIKQRTLLLDCDLGMADAGIVLGMNSD--RTIED 67
Query: 63 VLEGRVPYEKALVKDKRGLSLWLLPANQRANKDV-IDIEKWNKTVEEIKN-SGNYDYILV 120
+L GR YE + + GL+ L+P A + + +D + V+ ++ + ++DYIL+
Sbjct: 68 ILTGRRQYEDVVQQGVFGLN--LVPGVNGAGRIMEMDAVAKRRLVDSLRPWTKSFDYILL 125
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDK-RNYKVIVNRIKWE 179
D+P+G ++ AD+ ++V++ E +S D +I LL K + V+ N ++ E
Sbjct: 126 DNPSGASSSSLSLMASADQVILVLSSEPTSFMDGYALIKLLALEYKVKEILVVTNMVEDE 185
Query: 180 MVKRGAMLSVEDIVDI---LKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQA 231
R D+ +K +G +P + + + R + + FP S+A
Sbjct: 186 TEGRDLFRRFSDVSARFLGIKLHHLGSVPRDSHIREAVLRKRCCL--DLFPRSRA 238
gi|2983660 (AE000729) septum site-determining protein MinD [Aquifex aeolicus]
Length = 278
Score = 87.0 bits (212), Expect = 1e-16
Identities = 55/176 (31%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
I ++SGKGGVGKT ++ NIG L++ GK+VL+ D D+GL N+ ++ G+ D+ D++
Sbjct: 25 ISVSSGKGGVGKTLVSINIGEILSERGKRVLIFDGDLGLSNVHLMYGIAP--TKDLSDLI 82
Query: 65 EGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKT--VEEIKN--SGNYDYILV 120
+G E+ VK L + +++ D+ K T V+++ N+DY+++
Sbjct: 83 KGFATIEELPVKVNEHL---YFISGGSGFQELADLPKERLTTIVQKLYEYAEDNFDYVVI 139
Query: 121 DSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMD-KRNYKVIVNR 175
D+P GI + + S AD +I+ PE +++ DA +I ++ + N+ VI+N+
Sbjct: 140 DTPPGIHRTTVMLTSCADIPIILTTPEPTALMDAYALIKVINREEGVENFYVIINK 195
sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|2983325 (AE000705) hypothetical protein
[Aquifex aeolicus]
Length = 364
Score = 83.9 bits (204), Expect = 1e-15
Identities = 66/241 (27%), Positives = 119/241 (48%), Gaps = 39/241 (16%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDV 63
+I + SGKGGVGK+T+ AN+ AL++LG KV L+DAD+ ++ + GL+ V +D
Sbjct: 114 IIAVGSGKGGVGKSTVAANLAVALSQLGYKVGLLDADVYGPSVPTLFGLKGERV--TVDQ 171
Query: 64 LEGRVPYEK---------ALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGN 114
+ +P EK ++ + +W P +A + + KW GN
Sbjct: 172 FQRIIPVEKYGLKILSIGFMLPSEDTPIIWRGPMLMKALTEFLFSTKW----------GN 221
Query: 115 YDYILVDSPAGIE------------KGFQIAVSPADKALIVVNPEVSSIRDAD-RVIGLL 161
D++++D P G G + +P D AL V VS R+ + V+G++
Sbjct: 222 LDFLVMDLPPGTGDVQITLAQNVELTGAVVVTTPQDVALADVKKAVSMFREVNIPVLGVI 281
Query: 162 ESMDKRNYKVIVNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIV 221
E+M + ++ K+ + +G V + + +I+G IP +P++ + +++GEPIV
Sbjct: 282 ENM--AYFICPSDKQKYYIFGKG---KVAEFANAYGLKILGSIPIDPEVAEKSDKGEPIV 336
Query: 222 L 222
+
Sbjct: 337 I 337
sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|3257363|dbj|BAA30046| (AP000004)
295aa long hypothetical MRP protein [Pyrococcus
horikoshii]
Length = 295
Score = 83.5 bits (203), Expect = 2e-15
Identities = 68/273 (24%), Positives = 122/273 (43%), Gaps = 34/273 (12%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVY------ 58
I + SGKGGVGK+T+ N+ ALAK+G V ++DADI N+ +LG++ VY
Sbjct: 33 IAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVDKEEVYAEKFDD 92
Query: 59 ----------DILDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEE 108
D + + ++ + +W P +A K ++ KW
Sbjct: 93 GHFEMIPPTTDFMGQVTPIKVMSMGMMVPEDQPVIWRGPLVTKAIKQLLGDVKW------ 146
Query: 109 IKNSGNYDYILVDSPAGIEKGFQIAVS--PADKALIVVNPEVSSIRDADRVIGLLESMDK 166
G+ D++++D P G V D A+IV P+ ++ D + + +++ M+
Sbjct: 147 ----GSLDFMIIDFPPGTGDEILTVVQSIKLDAAIIVTTPQEVALLDTGKAVNMMKKMEV 202
Query: 167 RNYKVIVNRIKWEMVKRGAMLSV------EDIVDILKAEIIGIIPEEPKLVDFTNRGEPI 220
V+ N G + + E + + +G IP + K + ++ G PI
Sbjct: 203 PYVAVVENMSYLICPHCGNKIDIFGEGGGEKLAQKEGVDFLGKIPIDLKAREASDLGIPI 262
Query: 221 VLDEKFPASQAIIDTARRLMGESIPLKRYGEKK 253
VL E PA++A ++ A +L+ + +K G K+
Sbjct: 263 VLYEDTPAAKAFMELAEKLVNKLKEIKGDGGKE 295
gi|4154712 (AE001457) putative [Helicobacter pylori J99]
Length = 368
Score = 81.5 bits (198), Expect = 7e-15
Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 31/249 (12%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDV 63
V++I+SGKGGVGK+T + N+ ALA L +KV L+DAD+ N+ ++GL+N V I+D
Sbjct: 99 VVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQNADV--IMDP 156
Query: 64 LEGRVPYEKA---------LVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGN 114
++ KA L+ D+ +W P RA + ++ W G+
Sbjct: 157 SGKKLIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDIIW----------GD 206
Query: 115 YDYILVDSPAGIEKGFQIAVS---PADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKV 171
D ++VD P G Q+ ++ P + V P++ S+ DA R + + + + +
Sbjct: 207 LDVLVVDMPPGTGDA-QLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHIPIAGI 265
Query: 172 IVNRIKW--EMVKRGAML----SVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEK 225
+ N + E K+ + + S+ +++ +I+ +P EPK+ ++GEPIV+
Sbjct: 266 VENMGSFVCEHCKKESEIFGSNSMSGLLEAYNTQILAKLPLEPKVRLGGDKGEPIVISHP 325
Query: 226 FPASQAIID 234
S I +
Sbjct: 326 TSVSAKIFE 334
sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|2313292|gb|AAD07271.1| (AE000540)
ATP-binding protein (mpr) [Helicobacter pylori 26695]
Length = 412
Score = 81.1 bits (197), Expect = 9e-15
Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 31/249 (12%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDV 63
V++I+SGKGGVGK+T + N+ ALA L +KV L+DAD+ N+ ++GL++ V I+D
Sbjct: 143 VVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQSADV--IMDP 200
Query: 64 LEGRVPYEKA---------LVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGN 114
++ KA L+ D+ +W P RA + ++ W G+
Sbjct: 201 SGKKLIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDIIW----------GD 250
Query: 115 YDYILVDSPAGIEKGFQIAVS---PADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKV 171
D ++VD P G Q+ ++ P + V P++ S+ DA R + + + + +
Sbjct: 251 LDVLVVDMPPGTGDA-QLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHIPIAGI 309
Query: 172 IVNRIKW--EMVKRGAML----SVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEK 225
+ N + E K+ + + S+ ++++ +I+ +P EPK+ +RGEPIV+
Sbjct: 310 VENMGSFVCEHCKKESEIFGSNSMSELLEAYHTQILAKLPLEPKVRLGGDRGEPIVISHP 369
Query: 226 FPASQAIID 234
S I +
Sbjct: 370 NSVSAKIFE 378
sp|P37522|SOJ_BACSU SOJ PROTEIN >gi|2127177|pir||I40444 probable Spo0J regulation
protein - Bacillus subtilis >gi|467381|dbj|BAA05227|
(D26185) regulation of Spo0J and Orf283 (probable)
[Bacillus subtilis] >gi|580906|emb|CAA44408| (X62539)
unnamed protein product [Bacillus subtilis]
>gi|2636644|emb|CAB16134| (Z99124) soj [Bacillus
subtilis]
Length = 253
Score = 81.1 bits (197), Expect = 9e-15
Identities = 69/260 (26%), Positives = 128/260 (48%), Gaps = 32/260 (12%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLE----NRI 56
M ++I IT+ KGGVGKTT + N+G LA +GK+VLL+D D N LG+E +
Sbjct: 1 MGKIIAITNQKGGVGKTTTSVNLGACLAYIGKRVLLVDID-PQGNATSGLGIEKADVEQC 59
Query: 57 VYDIL----DVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDI-------EKWNKT 105
VYDIL DV++ ++K +L ++PA + I++ + +
Sbjct: 60 VYDILVDDADVID--------IIKATTVENLDVIPATIQLAGAEIELVPTISREVRLKRA 111
Query: 106 VEEIKNSGNYDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMD 165
+E +K NYDYI++D P + A++ +D +I V E ++ +++ + +
Sbjct: 112 LEAVKQ--NYDYIIIDCPPSLGLLTINALTASDSVVIPVQCEYYALEGLSQLLNTVRLVQ 169
Query: 166 KR-NYKVIVNRIKWEMVKRGAMLSVEDIVDILK----AEIIGIIPEEPKLVDFTNRGEPI 220
K N +++ + M+ L ++ I ++ K +IP +L + + G+PI
Sbjct: 170 KHLNTDLMIEGVLLTMLDARTNLGIQVIEEVKKYFRDKVYKTVIPRNVRLSEAPSHGKPI 229
Query: 221 VL-DEKFPASQAIIDTARRL 239
+L D + ++ +D A+ +
Sbjct: 230 ILYDPRSRGAEVYLDLAKEV 249
gi|2622843 (AE000928) nitrogenase reductase related protein [Methanobacterium
thermoautotrophicum]
Length = 252
Score = 79.6 bits (193), Expect = 3e-14
Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 31/257 (12%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLE-NRIVYDILD 62
VI+ SGKGG GKT +A++ LA G VL IDAD NL LG+ + V D+ +
Sbjct: 5 VIIAVSGKGGTGKTMFSASLIRVLASTGADVLAIDADPD-SNLPEALGVPVSGTVGDVRE 63
Query: 63 VLE-----GRVPYE-----------KALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTV 106
L+ GR+P A + + R L ++ + + + +
Sbjct: 64 QLKRDTAAGRIPPSANKWDMLDYRIMASITETRDFDLLVMGRPEGSGCYCAVNTMLRRII 123
Query: 107 EEIKNSGNYDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDK 166
E I + NYDYI++D+ AG+E + D ++V +P I A R++ L + ++
Sbjct: 124 ENI--AENYDYIVIDTEAGLEHLSRRTTQNVDIMIVVTDPSKRGILTARRIVELSQELEI 181
Query: 167 RNYKV--IVNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIV-LD 223
+ KV ++NR++ + R L ++D E+IG+IPE+P + + G P+ L
Sbjct: 182 KFKKVFLVLNRVREGDLDR---LELDD-----GLEVIGVIPEDPLVSSYDMEGRPLYELP 233
Query: 224 EKFPASQAIIDTARRLM 240
E + +AI A +++
Sbjct: 234 EDSESFRAIKKVAEKIL 250
dbj|BAA30712| (AP000006) 217aa long hypothetical cell division inhibitor
[Pyrococcus horikoshii]
Length = 217
Score = 77.6 bits (188), Expect = 1e-13
Identities = 64/223 (28%), Positives = 113/223 (49%), Gaps = 12/223 (5%)
Query: 43 LRNLDMILGLENRIVYDILDVLEGRVPYEKALVKDKRGLSLWLLPANQRANK-DVIDIEK 101
+ NL +ILG+E+ I + DVL G + A+ + G+ + +P K E+
Sbjct: 1 MANLSLILGMED-IPVTLHDVLAGEAELKDAIYEGPAGVKV--IPGGLSLEKVKKARPER 57
Query: 102 WNKTVEEIKNSGNYDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLL 161
+ + EI G D+IL+D+PAG+E A+ + +IV NPE+++I D+ + +
Sbjct: 58 LRELIREISQMG--DFILIDAPAGLELTSVTALLIGKELIIVTNPEIAAITDSLKTKLVA 115
Query: 162 ESMDKRNYKVIVNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIV 221
E + I+NR+ E + LS E+I +L+ ++GI+PE+P++ + G P+V
Sbjct: 116 EKLGTLPLGAILNRVTNEKTE----LSREEIEALLEVPVLGIVPEDPEVKRASAYGVPLV 171
Query: 222 L-DEKFPASQAIIDTARRLMG-ESIPLKRYGEKKGLLSRLLGG 262
+ + PA+ A A +L G + P + K + L GG
Sbjct: 172 VKNPTSPAAIAYKQIAAKLAGIKWKPPEPESPVKRIFKALFGG 214
emb|CAB49765.1| (AJ248285) MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING PROTEIN
[Pyrococcus abyssi]
Length = 295
Score = 77.3 bits (187), Expect = 1e-13
Identities = 65/273 (23%), Positives = 122/273 (43%), Gaps = 36/273 (13%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVY------ 58
+ + SGKGGVGK+T+ N+ ALAK+G V ++DADI N+ +LG+E +Y
Sbjct: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
Query: 59 ----------DILDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEE 108
D + + ++ + +W +A K ++ KW
Sbjct: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKW------ 146
Query: 109 IKNSGNYDYILVDSPAGIEKGFQIAVS--PADKALIVVNPEVSSIRDADRVIGLLESMDK 166
G+ D++++D P G V D A+IV P+ ++ D + + +++ M+
Sbjct: 147 ----GSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEV 202
Query: 167 RNYKVIVNRIKWEMVKRGAMLSV------EDIVDILKAEIIGIIPEEPKLVDFTNRGEPI 220
V+ N G + + E + + + +G IP + K + ++ G PI
Sbjct: 203 PYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPI 262
Query: 221 VLDEKFPASQAIIDTARRLMGESIPLKRYGEKK 253
VL PA++A ++ A +L+ + +K G++K
Sbjct: 263 VLYGDTPAAKAFMEIAEKLVNKLKEMK--GDEK 293
emb|CAA14529| (AJ235270) SOJ PROTEIN (soj) [Rickettsia prowazekii]
Length = 255
Score = 77.3 bits (187), Expect = 1e-13
Identities = 71/263 (26%), Positives = 127/263 (47%), Gaps = 22/263 (8%)
Query: 3 EVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILD 62
++I I + KGGV KTT T N+ TA A + KK+L+ID D + ++ + I
Sbjct: 2 KIISIVNQKGGVAKTTTTVNLATAFASVNKKILVIDLDPQGNSSTGFGIIQQQRKNTIYQ 61
Query: 63 VLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWN-------KTVEEIKNSGNY 115
VL + + A++ +L ++ +N + +D+ K +EE+K Y
Sbjct: 62 VLTNLIELKDAIIATNIP-NLEIITSNTNLSAAELDLTTLKEREYVLMKLLEEVKIL--Y 118
Query: 116 DYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKR-NYKVIVN 174
DYI++D P + A+ +D+ LI + + S+ ++ +E ++K+ N K+ +
Sbjct: 119 DYIIIDCPPSLNLLTVNALVASDEVLIPMQCDFYSLEGLSHLLKTIEIVEKKLNPKIKIA 178
Query: 175 RIKWEMVKRGAMLS--VEDIVDILKAEII--GIIPEEPKLVDFTNRGEPIVL-DEKFPAS 229
I + M + L+ VED V E++ +IP KL + + G+P +L D K +
Sbjct: 179 GILFTMYDKRNRLTEQVEDDVRKCLGELVFKTVIPRNIKLSEAPSYGKPAILYDYKCAGA 238
Query: 230 QAIIDTARRLMGESIPLKRYGEK 252
A I+ + + L+RYGEK
Sbjct: 239 VAYIELTKEI------LERYGEK 255
sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|2129169|pir||D64335
nucleotide-binding protein - Methanococcus jannaschii
>gi|1591007 (U67483) nucleotide-binding protein
[Methanococcus jannaschii]
Length = 290
Score = 77.3 bits (187), Expect = 1e-13
Identities = 65/234 (27%), Positives = 108/234 (45%), Gaps = 26/234 (11%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRI-------V 57
IVI SGKGGVGK+T+T N+ AL +GKKV ++DADI N+ +LG+EN +
Sbjct: 42 IVILSGKGGVGKSTVTVNLAAALNLMGKKVGVLDADIHGPNIPKMLGVENTQPMAGPAGI 101
Query: 58 YDILDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNSGNYDY 117
+ I+ + L+ D + +W P A + + W G DY
Sbjct: 102 FPIVTKDGIKTMSIGYLLPDDKTPVIWRGPKVSGAIRQFLSDVVW----------GELDY 151
Query: 118 ILVDSPAGI---EKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVN 174
+L+D+P G + ++ D A+IV PE S+ D + I + + ++ +I N
Sbjct: 152 LLIDTPPGTGDEQLTIMQSIPDIDGAIIVTTPEEVSVLDVKKSIMMAKMLNIPIIGIIEN 211
Query: 175 RIKWEMVKRGAMLSV------EDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVL 222
+ ++ + E L E +G IP + K + +++G P+VL
Sbjct: 212 MSGFVCPYCNKVVDIFGRGGGEKAAKELGVEFLGRIPLDIKAREASDKGIPMVL 265
dbj|BAA30925.1| (AP000007) 252aa long hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 76.1 bits (184), Expect = 3e-13
Identities = 62/232 (26%), Positives = 119/232 (50%), Gaps = 25/232 (10%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
+++ +G+GG GKTT TAN+ T A+ G +VL ID D+ L NL + L+N + Y + ++
Sbjct: 3 VIVVTGRGGAGKTTTTANLSTYFAQSGYRVLAIDGDLYLPNLGLHFALDN-VKYTLHSIV 61
Query: 65 EG-RVPYEKALVKDKRGLSLWLLPANQRANKDVIDI--EKWNKTVEEIKNSGNYDYILVD 121
+ + E A+ + ++ ++++P + R +DV+ + ++ +E +K Y I VD
Sbjct: 62 KNPNMDPEWAIYRHEQ-TGVYVMPGSPRL-EDVLGVSGQRLKDIIEHLKY--KYPLIFVD 117
Query: 122 SPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVI-------GLLESMDKRNYKVIVN 174
SP GI A + +IVV E S I + ++ L K V++N
Sbjct: 118 SPTGIPFDTLPAFESFNYQIIVVEVERSPIYSFETMVENEVLKLKALGDKFKLEVGVVIN 177
Query: 175 RIKWEMVKRGAMLSVEDIVDILKAEI----IGIIPEEPKLVDFTNRGEPIVL 222
++ R A ++ IV++++ +I +G+IP + + + N G P+++
Sbjct: 178 KV------REAADVMDKIVEVIEEDIGVPVLGVIPFDDSVPESINIGIPVLV 223
sp|Q58334|Y924_METJA HYPOTHETICAL ATP-BINDING PROTEIN MJ0924 >gi|2127790|pir||D64415
capsular polysaccharide biosynthesis protein homolog -
Methanococcus jannaschii >gi|1591597 (U67536) capsular
polysaccharide biosynthesis protein, putative (cap8B)
[Methanococcus jannaschii]
Length = 263
Score = 75.3 bits (182), Expect = 5e-13
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 11/137 (8%)
Query: 3 EVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILD 62
+VI + KGG GKT +TAN ALAK GKK+LLID D+G ++L +L +++ I + D
Sbjct: 9 KVITFSIAKGGTGKTIITANAAAALAKKGKKILLIDGDVGSKSLSHLLNVKSNIF--LAD 66
Query: 63 VLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWN-KTVEEIKNSGNYDYILVD 121
++E P + A+V ++ LL K + D K++ ++ K G+YDY+ +D
Sbjct: 67 IIEEERPIKDAIVNTPIE-NIELL----AVGKSLADYLKFDINILKRFKELGDYDYVFID 121
Query: 122 SP---AGIEKGFQIAVS 135
+P +G+E + +S
Sbjct: 122 APSTSSGVETYLALGLS 138
gb|AAD08185.1| (AE000620) SpoOJ regulator (soj) [Helicobacter pylori 26695]
Length = 264
Score = 74.5 bits (180), Expect = 8e-13
Identities = 68/244 (27%), Positives = 110/244 (44%), Gaps = 24/244 (9%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
M+E+I + + KGGVGKTT N+ +LA KK+LLID D + ++I YDI
Sbjct: 2 MSEIIAVANQKGGVGKTTTAVNLAASLAVHEKKILLIDFDPQANATSSLGFRRDKIDYDI 61
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPAN---QRANKDVIDIEKWNKTVE-EIKNS---- 112
VL GR + ++K + L L+P+N K D + NK E +KN+
Sbjct: 62 YHVLIGRKQISQVILKTQMPF-LDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESV 120
Query: 113 -GNYDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKV 171
G YDYI++DSP + ++S A +I + E ++ ++ + + K
Sbjct: 121 VGLYDYIIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIRMLQKSTNPK 180
Query: 172 I-------------VNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGE 218
+ +N K + + E D E I +IP+ KL + + G+
Sbjct: 181 LKIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATGEYI-MIPKSVKLAESPSFGK 239
Query: 219 PIVL 222
PI+L
Sbjct: 240 PILL 243
gb|AAB51267.1| (U87804) ParA [Caulobacter crescentus]
Length = 266
Score = 74.1 bits (179), Expect = 1e-12
Identities = 72/254 (28%), Positives = 126/254 (49%), Gaps = 23/254 (9%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDAD-IGLRNLDMILGLENRIVYDILD 62
V+ I + KGGVGKTT N+GTA A LG++VLLIDAD G + + +G R + D
Sbjct: 8 VLAIANQKGGVGKTTTAINLGTAWA-LGERVLLIDADPQGNCSTGLGIGRTQRRT-TLYD 65
Query: 63 VLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIE---------KWNKTVEEIKNSG 113
VL G P A VK + L ++PA+ A+ ++IE + +E I+ +G
Sbjct: 66 VLMGEAPVVDAAVKTELP-GLDVIPAD--ADLSGVEIELGQTARRSYRLRDALEAIRANG 122
Query: 114 NYDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKR-NYKVI 172
Y Y+L+D P + A++ AD + + E ++ +++ +E + + N ++
Sbjct: 123 PYTYVLIDCPPSLNVLTVNAMTAADAVFVPLQCEFFALEGLTQLMRTIERVARSLNPRLE 182
Query: 173 VNRIKWEMVKRGAMLSVEDIVDILKAEI-----IGIIPEEPKLVDFTNRGEPIVL-DEKF 226
+ + + R LS E + ++A +IP ++ + + G+P++L D K
Sbjct: 183 IQGVVLTIYDRRNSLS-EQVAKDVRAHFGDKVYDAVIPRNVRVSEAPSFGKPVLLYDLKC 241
Query: 227 PASQAIIDTARRLM 240
SQA + AR ++
Sbjct: 242 AGSQAYLKLAREVI 255
emb|CAB49287.1| (AJ248284) cell division inhibitor (minD-3) [Pyrococcus abyssi]
Length = 251
Score = 71.0 bits (171), Expect = 1e-11
Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 26/232 (11%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
+++ +G+GG GKTT TAN+ T A+ G +VL ID D+ L NL + L+N + Y + ++
Sbjct: 3 VIVVTGRGGAGKTT-TANLSTYFAQAGYRVLAIDGDLYLPNLGLHFALDN-VKYTLHSIV 60
Query: 65 EG-RVPYEKALVKDKRGLSLWLLPANQRANKDVIDI--EKWNKTVEEIKNSGNYDYILVD 121
+ + E A+ + ++ ++++P + R +DV+ + ++ +E +K Y I VD
Sbjct: 61 KNPNMDPEWAIYRHEQ-TGVYVMPGSPRL-EDVLGVSGQRLKDVIENLKY--KYPVIFVD 116
Query: 122 SPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVI-------GLLESMDKRNYKVIVN 174
SP G+ A + +IVV E S I + ++ L K + V++N
Sbjct: 117 SPTGVPFDTLPAFESFNYQIIVVEIERSPIYSFETMVENEVLKLKALGDRFKLDVGVVIN 176
Query: 175 RIKWEMVKRGAMLSVEDIVDILKAEI----IGIIPEEPKLVDFTNRGEPIVL 222
++ R A ++ IV+ ++ +I +G+IP + + + N G P+++
Sbjct: 177 KV------REAADVIDKIVETIEEDIGVPVLGVIPFDDAVPESINVGIPVLV 222
gi|4155660 (AE001534) putative [Helicobacter pylori J99]
Length = 264
Score = 71.0 bits (171), Expect = 1e-11
Identities = 67/244 (27%), Positives = 108/244 (43%), Gaps = 24/244 (9%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
M E+I + + KGGVGKTT N+ +LA KK+LLID D + ++I YDI
Sbjct: 2 MNEIIAVANQKGGVGKTTTAVNLAASLAAHEKKILLIDFDPQANATSSLGFRRDKIDYDI 61
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPAN---QRANKDVIDIEKWNKTVE-EIKNSGN-- 114
VL GR + ++K + L L+P+N K D + NK E +KN+
Sbjct: 62 YHVLIGRKQISQVILKTQMPF-LDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALGSV 120
Query: 115 ---YDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKV 171
YDYI++DSP + ++S A +I + E ++ ++ + + K
Sbjct: 121 VKLYDYIIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIRMLQKSTNPK 180
Query: 172 I-------------VNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGE 218
+ +N K + + E D E I +IP+ KL + + G+
Sbjct: 181 LKIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATGEYI-MIPKSVKLAESPSFGK 239
Query: 219 PIVL 222
PI+L
Sbjct: 240 PILL 243
sp|P50863|MRP_BACSU MRP PROTEIN HOMOLOG >gi|1177249|emb|CAA52756| (X74737) rec233
[Bacillus subtilis] >gi|1644213|dbj|BAA10994| (D64126)
unknown [Bacillus subtilis] >gi|2632421|emb|CAB11930|
(Z99104) alternate gene name: ybxI; similar to
ATP-binding Mrp-like protein [Bacillus subtilis]
Length = 352
Score = 69.9 bits (168), Expect = 2e-11
Identities = 70/252 (27%), Positives = 115/252 (44%), Gaps = 33/252 (13%)
Query: 5 IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDVL 64
+ + SGKGGVGK+T++ N+ +LA+LGKKV LIDADI ++ ++G+ R +
Sbjct: 109 LAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVR------PTI 162
Query: 65 EGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKW---------NKTVEEIKNSGNY 115
EG EK L ++ G+ + + N V+ W N E++ G
Sbjct: 163 EG----EKLLPVERFGVKVMSMGFFVEENAPVV----WRGPMLGKMLNNFFHEVE-WGEV 213
Query: 116 DYILVDSPAGI-EKGFQI-AVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIV 173
DYI++D P G + + + P+ K +IV P ++ A R + D VI
Sbjct: 214 DYIVLDLPPGTGDVALDVHTMLPSCKEIIVSTPHPTAAFVAARAGSMAIKTDHEVVGVIE 273
Query: 174 NRIKWEMVKRGAMLSV------EDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFP 227
N +E K G V + + + L ++G IP + D ++ P V DE P
Sbjct: 274 NMAYYESAKTGEREYVFGKGGGDKLAEELNVPLLGRIPLKQPDWD-KDQFAPSVYDENHP 332
Query: 228 ASQAIIDTARRL 239
+ D A+++
Sbjct: 333 IGEIYQDIAKKI 344
sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|699143 (U15180) MRP protein [Mycobacterium
leprae]
Length = 435
Score = 69.1 bits (166), Expect = 4e-11
Identities = 71/282 (25%), Positives = 121/282 (42%), Gaps = 57/282 (20%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENR----- 55
+ V + SGKGGVGK+T+T N+ TA+A G V ++DADI ++ ++G R
Sbjct: 170 LTRVYTVASGKGGVGKSTVTVNLATAIAARGLAVGVLDADIHGHSIPRMMGSNQRPIQLE 229
Query: 56 ------IVYDILDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEI 109
IV+++ + G+ V +W P RA + + W
Sbjct: 230 SMILPPIVHEVKVISIGQFTEGNTPV-------IWRGPMLHRALQQFLSDVYW------- 275
Query: 110 KNSGNYDYILVDSPAGIEKGFQIAVS-----PADKALIVVNPEVSSIRDADRVIGLLESM 164
G+ D +++D P G IA+S P + L+V P++++ A+R G +
Sbjct: 276 ---GDLDVLMLDLPPGTG---DIAISVAQLIPNAEILVVTTPQLAAAEVAERA-GSIALQ 328
Query: 165 DKRNYKVIVNRIKWEMVKRGAMLSV------EDIVDILK------AEIIGIIPEEPKLVD 212
++ +V + M+ G+ L V + + + L ++G IP +P LV
Sbjct: 329 TRQRIVGVVENMSGLMMPDGSRLQVFGEGGGQQVAERLSRAVGTDVPLLGQIPLDPALVA 388
Query: 213 FTNRGEPIVLD--------EKFPASQAIIDTARRLMGESIPL 246
+ G PIVL+ E + + RRL G S+ L
Sbjct: 389 AGDSGIPIVLNASDSPVGKELLRIADGLSSRQRRLAGVSLGL 430
gb|AAD35987.1|AE001755_10 (AE001755) conserved hypothetical protein [Thermotoga maritima]
Length = 275
Score = 67.5 bits (162), Expect = 1e-10
Identities = 44/159 (27%), Positives = 82/159 (50%), Gaps = 4/159 (2%)
Query: 4 VIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILDV 63
+I + SGKGGVGK+ + N+ AL + G +VLL+DAD+G +++++LG + D
Sbjct: 15 IISVLSGKGGVGKSVIAVNLSLALKEKGLRVLLLDADVGFGSVEILLGF--MAPKTLKDF 72
Query: 64 LEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEI-KNSGNYDYILVDS 122
+ V E + + K G+ + L + + ++ + +E + YDY+++D
Sbjct: 73 FKSNVRIEDIVFETKYGVDV-LSSGIDMEDLILFNLGDRRRFFDEFARLLRKYDYLVIDF 131
Query: 123 PAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLL 161
P G + +D ++V +PE +SI + +I LL
Sbjct: 132 PPGYNENLDQFYIQSDFLILVTSPEPTSIINTYTLIKLL 170
sp|P31856|YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN GIDB-UNCI INTERGENIC REGION
>gi|94916|pir||S18097 hypothetical protein 8 -
Pseudomonas putida >gi|45713|emb|CAA44421| (X62540)
unnamed protein product [Pseudomonas putida]
Length = 263
Score = 67.5 bits (162), Expect = 1e-10
Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 29/244 (11%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLE-NRIVYD 59
MA+V I + KGGVGKTT N+ +LA ++VLLID D N M G++ + + +
Sbjct: 1 MAKVFAIANQKGGVGKTTTCINLAASLAATKRRVLLIDLD-PQGNATMGSGVDKHELEHS 59
Query: 60 ILDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDVIDIEKWNKTVEEIKNS-----GN 114
+ D+L G +A+ + G LLPAN+ + + + ++N+ N
Sbjct: 60 VYDLLIGECDLAQAMHYSEHG-GFQLLPANRDLTAAEVVLLEMQVKESRLRNALAPIRDN 118
Query: 115 YDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVN 174
YDYIL+D P + A+ +D +I + E ++ GL + +D N K I
Sbjct: 119 YDYILIDCPPSLSMLTLNALVASDGVIIPMQCEYYALE------GLSDLVD--NIKRIAA 170
Query: 175 RIKWEMVKRGAM-------LSVEDIVDILKAEIIG------IIPEEPKLVDFTNRGEPIV 221
R+ E+ G + LS+ + V E G +IP +L + + G P +
Sbjct: 171 RLNPELKIEGLLRTMYDPRLSLNNDVSAQLKEHFGPQLYDTVIPRNIRLAEAPSFGMPAL 230
Query: 222 LDEK 225
+K
Sbjct: 231 AYDK 234
gi|2688658 (AE001172) ATP-binding protein (ylxH-3) [Borrelia burgdorferi]
Length = 323
Score = 66.3 bits (159), Expect = 2e-10
Identities = 49/155 (31%), Positives = 75/155 (47%), Gaps = 2/155 (1%)
Query: 1 MAEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDI 60
M ++I + SGKGGVGKT+ AN+G L+ LGK V+L+D D+G NL LG++N+ V I
Sbjct: 1 MTKIIPVASGKGGVGKTSFVANVGYKLSSLGKTVILVDLDLGGSNLHTCLGVKNKGV-GI 59
Query: 61 LDVLEGRVPYEKALVKDKRGLSLWLLPANQRANKDV-IDIEKWNKTVEEIKNSGNYDYIL 119
+ + LV L+L+P + + K +E I+ D+I
Sbjct: 60 GSFINKKSKSFSDLVCKTSYDKLYLIPGDALYTGTANLPFSIKKKIIESIQKDLIADFIF 119
Query: 120 VDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDA 154
+D +G + +IV PE SI +A
Sbjct: 120 LDLGSGTSYNTIDFYLASYSGVIVTIPETPSILNA 154
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.317 0.140 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68450839
Number of Sequences: 444417
Number of extensions: 2915975
Number of successful extensions: 11314
Number of sequences better than 10.0: 491
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 10693
Number of HSP's gapped (non-prelim): 549
length of query: 262
length of database: 136,724,657
effective HSP length: 56
effective length of query: 206
effective length of database: 111,837,305
effective search space: 23038484830
effective search space used: 23038484830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 69 (31.3 bits)
