Score E
Sequences producing significant alignments: (bits) Value
gi|2983412 (AE000712) septum site-determining protein MinC ... 340 6e-93
gb|AAD36124.1|AE001765_3 (AE001765) septum site-determining... 84 7e-16
dbj|BAA10663| (D64005) septum site-determining protein MinC... 80 1e-14
sp|Q01463|MINC_BACSU SEPTUM SITE-DETERMINING PROTEIN MINC >... 70 1e-11
gb|AAF11310.1|AE002017_1 (AE002017) septum site-determining... 64 1e-09
sp|P18196|MINC_ECOLI CELL DIVISION INHIBITOR MINC >gi|72934... 46 2e-04
gi|4154904 (AE001472) putative [Helicobacter pylori J99] 34 1.2
gb|AAD08105.1| (AE000613) H. pylori predicted coding region... 31 6.2
gi|2983412 (AE000712) septum site-determining protein MinC [Aquifex aeolicus]
Length = 201
Score = 340 bits (862), Expect = 6e-93
Identities = 179/201 (89%), Positives = 179/201 (89%)
Query: 1 MIEIKGKTLPVIQIKIKEKGNIDXXXXXXXXXXSHNIFKGSLIILENPEVLKPEERKKVE 60
MIEIKGKTLPVIQIKIKEKGNID SHNIFKGSLIILENPEVLKPEERKKVE
Sbjct: 1 MIEIKGKTLPVIQIKIKEKGNIDKLLKELKEKLSHNIFKGSLIILENPEVLKPEERKKVE 60
Query: 61 EILKEFSRGFIXXXXXXXXXXXXSRLLIIERTLRAGQRIEHRGDILILGDVNKDAEVLAG 120
EILKEFSRGFI SRLLIIERTLRAGQRIEHRGDILILGDVNKDAEVLAG
Sbjct: 61 EILKEFSRGFIEGKKEGKEKREESRLLIIERTLRAGQRIEHRGDILILGDVNKDAEVLAG 120
Query: 121 GNIIVMGKLRGVAKAGLIGDHSAVIVALKMEPQLLQIGKKKAIMSEADRNSPGYPEVAKI 180
GNIIVMGKLRGVAKAGLIGDHSAVIVALKMEPQLLQIGKKKAIMSEADRNSPGYPEVAKI
Sbjct: 121 GNIIVMGKLRGVAKAGLIGDHSAVIVALKMEPQLLQIGKKKAIMSEADRNSPGYPEVAKI 180
Query: 181 EGEDIVLEPIEGAERWLKLLL 201
EGEDIVLEPIEGAERWLKLLL
Sbjct: 181 EGEDIVLEPIEGAERWLKLLL 201
gb|AAD36124.1|AE001765_3 (AE001765) septum site-determining protein MinC, putative
[Thermotoga maritima]
Length = 210
Score = 84.3 bits (205), Expect = 7e-16
Identities = 40/104 (38%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Query: 88 IIERTLRAGQRIEHRGDILILGDVNKDAEVLAGGNIIVMGKLRGVAKAGLIGDHSAVIVA 147
+I+R +R+GQ + H GD+++ G+VNK AE+LAGG+++V GK +G +AGL AV+ A
Sbjct: 103 VIKRNIRSGQTVVHSGDVIVFGNVNKGAEILAGGSVVVFGKAQGNIRAGLNEGGQAVVAA 162
Query: 148 LKMEPQLLQIGKKKAIMSEADRNSPGYPEVAKIEGEDIVLEPIE 191
L ++ L+QI A + P +A ++G IV+EP +
Sbjct: 163 LDLQTSLIQI----AGFITHSKGEENVPSIAHVKGNRIVIEPFD 202
dbj|BAA10663| (D64005) septum site-determining protein MinC [Synechocystis sp.]
Length = 152
Score = 80.0 bits (194), Expect = 1e-14
Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 87 LIIERTLRAGQRIEHRGDILILGDVNKDAEVLAGGNIIVMGKLRGVAKAGLIGDHSAVIV 146
L++ TLR+G I H GD++I+GDVN + ++A G+I++ G LRG+A AG G+ AVI+
Sbjct: 41 LVVRHTLRSGGEIRHGGDVVIIGDVNPGSSIVADGDILIWGCLRGMAHAGAKGNDQAVIM 100
Query: 147 ALKMEPQLLQIGKKKAIMSEADRNSPGYPEVAKIEGEDIVLEPIEGAER 195
L++ ++IG + A + AD PE+A I E I L P+ +R
Sbjct: 101 ILRLAACQIRIGDRLARVG-ADAVDRREPEIAYITSEGIRLTPVRQFQR 148
sp|Q01463|MINC_BACSU SEPTUM SITE-DETERMINING PROTEIN MINC >gi|322176|pir||F45239 septum
placement determinant minC - Bacillus subtilis
>gi|142858 (M96343) MinC protein [Bacillus subtilis]
>gi|143215 (M95582) putative [Bacillus subtilis]
>gi|580892|emb|CAA78817| (Z15113) MinC [Bacillus
subtilis] >gi|2635265|emb|CAB14760| (Z99118) minC
[Bacillus subtilis]
Length = 226
Score = 70.2 bits (169), Expect = 1e-11
Identities = 32/74 (43%), Positives = 52/74 (70%)
Query: 84 SRLLIIERTLRAGQRIEHRGDILILGDVNKDAEVLAGGNIIVMGKLRGVAKAGLIGDHSA 143
+ ++ + + +R+GQ ++ +GD+L++GDVN V AGGNI V+G L+G+A AG G++ A
Sbjct: 103 AEIISVSKIVRSGQVLQVKGDLLLIGDVNPGGTVRAGGNIFVLGSLKGIAHAGFNGNNQA 162
Query: 144 VIVALKMEPQLLQI 157
VI A +M P L+I
Sbjct: 163 VIAASEMLPTQLRI 176
gb|AAF11310.1|AE002017_1 (AE002017) septum site-determining protein, putative [Deinococcus
radiodurans]
Length = 169
Score = 63.6 bits (152), Expect = 1e-09
Identities = 36/88 (40%), Positives = 53/88 (59%), Gaps = 1/88 (1%)
Query: 84 SRLLIIERTLRAGQRIEHRGDILILGDVNKDAEVLAGGNIIVMGKLRGVAKAGLIGDHSA 143
++ +I+ ++RAG R E+RG +++LGDVN AE++A G++IV G LRGV AG G H
Sbjct: 57 AQTVIVPHSVRAGFRGEYRGSVVVLGDVNPGAELIAAGDVIVAGALRGVVHAGYGGTHPD 116
Query: 144 VIV-ALKMEPQLLQIGKKKAIMSEADRN 170
IV A + ++IG A E N
Sbjct: 117 PIVWARPIASAQIRIGDAVARAPEGSSN 144
sp|P18196|MINC_ECOLI CELL DIVISION INHIBITOR MINC >gi|72934|pir||CEECIC cell division
inhibitor minC - Escherichia coli >gi|146866 (J03153)
MinC protein [Escherichia coli]
>gi|1651575|dbj|BAA36010| (D90751) Cell division
inhibitor MinC. [Escherichia coli]
>gi|1651579|dbj|BAA36023| (D90752) Cell division
inhibitor MinC. [Escherichia coli] >gi|1787424
(AE000216) cell division inhibitor, inhibits ftsZ ring
formation [Escherichia coli]
Length = 231
Score = 46.1 bits (107), Expect = 2e-04
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 88 IIERTLRAGQRI-EHRGDILILGDVNKDAEVLAGGNIIVMGKLRGVAKAGLIGDHSAVIV 146
+I+ +R+GQRI + D+++ V+ AE++A GNI V G +RG A AG GD I
Sbjct: 127 LIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVYGMMRGRALAGASGDRETQIF 186
Query: 147 ALKMEPQLLQI 157
+ +L+ I
Sbjct: 187 CTNLMAELVSI 197
gi|4154904 (AE001472) putative [Helicobacter pylori J99]
Length = 194
Score = 33.6 bits (75), Expect = 1.2
Identities = 13/44 (29%), Positives = 27/44 (60%)
Query: 88 IIERTLRAGQRIEHRGDILILGDVNKDAEVLAGGNIIVMGKLRG 131
I ER +R+G+ I ++ LG+++ A++++ G++ V G G
Sbjct: 95 IYERNIRSGEEIYSTNHLIFLGNIHNGAKIISEGSVSVYGVCEG 138
gb|AAD08105.1| (AE000613) H. pylori predicted coding region HP1053 [Helicobacter
pylori 26695]
Length = 217
Score = 31.3 bits (69), Expect = 6.2
Identities = 13/44 (29%), Positives = 26/44 (58%)
Query: 88 IIERTLRAGQRIEHRGDILILGDVNKDAEVLAGGNIIVMGKLRG 131
I ER +R+G+ I ++ LG+++ A++++ G + V G G
Sbjct: 118 IYERHIRSGEEIYSTNHLIFLGNIHNGAKIISEGCVSVYGVCEG 161
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.318 0.141 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45461158
Number of Sequences: 444417
Number of extensions: 1542306
Number of successful extensions: 3905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3897
Number of HSP's gapped (non-prelim): 8
length of query: 201
length of database: 136,724,657
effective HSP length: 56
effective length of query: 145
effective length of database: 111,837,305
effective search space: 16216409225
effective search space used: 16216409225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 68 (30.9 bits)