Score E
Sequences producing significant alignments: (bits) Value
gi|2983423 (AE000712) hypothetical protein [Aquifex aeolicus] 567 e-161
sp|Q57655|Y202_METJA HYPOTHETICAL PROTEIN MJ0202 >gi|212817... 175 5e-43
gb|AAD35269.1|AE001702_9 (AE001702) conserved hypothetical ... 170 1e-41
gi|2622876 (AE000930) conserved protein [Methanobacterium t... 159 3e-38
dbj|BAA30687| (AP000006) 287aa long hypothetical protein [P... 152 3e-36
emb|CAB49508.1| (AJ248284) hypothetical protein [Pyrococcus... 147 8e-35
gi|2649480 (AE001027) conserved hypothetical protein [Archa... 138 4e-32
gi|1293846 (U56966) coded for by C. elegans cDNA yk30b3.5; ... 43 0.002
gi|2649305 (AE001016) carbamoyl-phosphate synthase, large (... 35 0.66
gi|2622097 (AE000872) carbamoyl-phosphate synthase, large s... 34 1.5
gi|2232354 (AF006081) UDPG glucosyltransferase [Solanum ber... 34 1.5
pdb|2HFT| Mol_id: 1; Molecule: Human Tissue Factor; Chain... 34 1.5
sp|P39336|YJGL_ECOLI HYPOTHETICAL 71.1 KD PROTEIN IN PYRL-A... 34 1.5
pir||JC6009 surface-located membrane protein lmp3 - Mycopla... 34 1.9
pir||S28724 hypothetical protein - Methanococcus vannielii ... 34 1.9
ref|NP_011222.1|SMC2| nuclear protein related to ScII (chic... 33 2.5
gb|AAF18954.1|AF164515_3 (AF164515) Cps7G [Streptococcus suis] 33 3.3
gi|4102237 (AF011451) p55-L5 [Borrelia burgdorferi] 33 3.3
gi|4101624 (AF005057) unknown [Borrelia burgdorferi] 33 3.3
emb|CAA16972| (AL021811) putative protein [Arabidopsis thal... 33 3.3
gi|2688156 (AE001136) single-stranded-DNA-specific exonucle... 33 3.3
gi|2983518 (AE000719) L-seryl-tRNA(ser) selenium transferas... 32 4.3
emb|CAB39901.1| (AL049498) myosin ii [Schizosaccharomyces p... 32 7.5
emb|CAA21588.1| (AL032632) predicted using Genefinder; simi... 32 7.5
gi|2690228 (AE000790) antigen, S1 [Borrelia burgdorferi] 32 7.5
gi|1763304 (U75357) myosin II [Schizosaccharomyces pombe] 32 7.5
pir||I40296 S1 protein - Lyme disease spirochete >gi|106341... 32 7.5
ref|NP_005487.1|| chromosome-associated polypeptide C >gi|4... 31 9.8
gi|3851586 (AF092564) chromosome-associated protein-C [Homo... 31 9.8
ref|NP_011726.1|YGR210C| Ygr210cp >gi|1176059|sp|P42942|YG4... 31 9.8
sp|P10394|POL4_DROME RETROVIRUS-RELATED POL POLYPROTEIN FRO... 31 9.8
gi|294207 (L16863) sequence identical to orf152 of Sachay e... 31 9.8
gi|294200 (L04457) wholly encoded in short inverted repeat;... 31 9.8
pir||I40661 methylaspartate mutase (EC 5.4.99.1) conponent ... 31 9.8
gi|2983423 (AE000712) hypothetical protein [Aquifex aeolicus]
Length = 283
Score = 567 bits (1446), Expect = e-161
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI 60
MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI
Sbjct: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI 60
Query: 61 VKEISGEEDPFKDLKKLANEKAQELLSKVLKGTPDLKEALKLSAIGNFIDFAIKGVFDLE 120
VKEISGEEDPFKDLKKLANEKAQELLSKVLKGTPDLKEALKLSAIGNFIDFAIKGVFDLE
Sbjct: 61 VKEISGEEDPFKDLKKLANEKAQELLSKVLKGTPDLKEALKLSAIGNFIDFAIKGVFDLE 120
Query: 121 RELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVVYGV 180
RELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVVYGV
Sbjct: 121 RELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVVYGV 180
Query: 181 KGKPILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVISKGQA 240
KGKPILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVISKGQA
Sbjct: 181 KGKPILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVISKGQA 240
Query: 241 NFETLSSADRDLFFLLVAKCDPIGRETGGKRGELIFKYKPSKD 283
NFETLSSADRDLFFLLVAKCDPIGRETGGKRGELIFKYKPSKD
Sbjct: 241 NFETLSSADRDLFFLLVAKCDPIGRETGGKRGELIFKYKPSKD 283
sp|Q57655|Y202_METJA HYPOTHETICAL PROTEIN MJ0202 >gi|2128176|pir||C64325 hypothetical
protein MJ0202 - Methanococcus jannaschii >gi|1590945
(U67476) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 304
Score = 175 bits (438), Expect = 5e-43
Identities = 99/286 (34%), Positives = 165/286 (57%), Gaps = 13/286 (4%)
Query: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI 60
++ PEC C+I Q ++A ++ + ++ + +++ + PA+ + +
Sbjct: 13 VKIKPECAICIIRQVVDAANEITDDEREQFRLIKSTMEVIKDVYGESAVPAWMGTVVHRY 72
Query: 61 VKEISGEEDPFKDLKKLANEKAQELLSKV--LKGTPDLKEALKLSAI----GNFIDF-AI 113
+K+IS DP+K+LK+ AN+ A + L KV + T D E L+ + GN IDF A
Sbjct: 73 LKKISNNNDPYKNLKEKANKIALQYLDKVREMSNTDDELERLRKKVLATIAGNVIDFGAY 132
Query: 114 KGVFDLERELQKLLDKDFLIFDYDKFLERLE--NAKSVFIIGDNAGEIVFDKVLVKTLKG 171
++E+ ++ L+ + I + K L L+ N K + I DNAGEI+FD+VL++ +K
Sbjct: 133 STGINIEKLIEDTLNGELKIDNSRKLLNDLKDKNIKKILYICDNAGEIIFDRVLMEEIKK 192
Query: 172 MGKEVVYGVKGKPILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSS 231
K++V VKGKPILNDATLEDA+ + + KVI GSD +G LE+C EF++ F S+
Sbjct: 193 YDKDIVAVVKGKPILNDATLEDAKIAKIDEIAKVITTGSDIIGIILEECSEEFLKEFESA 252
Query: 232 DIVISKGQANFETLS----SADRDLFFLLVAKCDPIGRETGGKRGE 273
D++I+KG N+E+L+ D+ ++++L AKC P+ G G+
Sbjct: 253 DLIIAKGMGNYESLTEYEDKIDKPIYYILKAKCKPVAENIGVDVGD 298
gb|AAD35269.1|AE001702_9 (AE001702) conserved hypothetical protein [Thermotoga maritima]
Length = 293
Score = 170 bits (427), Expect = 1e-41
Identities = 102/285 (35%), Positives = 155/285 (53%), Gaps = 10/285 (3%)
Query: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI 60
+RA C+ C + Q N +KK EK I + +S+ + P + +
Sbjct: 4 LRADERCLICSLRQAENLLKKTITSPEKRWVIFREVFRIMSEMK-WGMKPLEVNGEVHRF 62
Query: 61 VKEISGEEDPFKDLKKLANEKAQELLS----KVLKGTPDLKEALKLSAIGNFIDFAIKG- 115
+ E EEDPFK+ K+ +N+ A +L+ ++L + A KL+ GN ID I G
Sbjct: 63 IMEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAVSGNLIDLGIPGW 122
Query: 116 -VFDLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLK--GM 172
V ++ +L ++ ++ F D++KF L NA ++F + DNAGEIVFDK ++ LK
Sbjct: 123 SVDEIFEKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKMENP 182
Query: 173 GKEVVYGVKGKPILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSD 232
EVV V+GKPI+NDAT+EDA+ + + + VI +G D+ G L+ EF + F+ D
Sbjct: 183 SLEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFEFD 242
Query: 233 IVISKGQANFETLSSAD-RDLFFLLVAKCDPIGRETGGKRGELIF 276
+VISKGQ NFE L + ++LFFLL AKCD + G +F
Sbjct: 243 VVISKGQGNFEGLYEEEKKNLFFLLTAKCDFVAEVLNVPLGGKVF 287
gi|2622876 (AE000930) conserved protein [Methanobacterium thermoautotrophicum]
Length = 286
Score = 159 bits (397), Expect = 3e-38
Identities = 95/280 (33%), Positives = 147/280 (51%), Gaps = 7/280 (2%)
Query: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI 60
M+ + EC PC + Q A+ +E ++ + L+ LS+ + + ++
Sbjct: 1 MKVYYECAPCFLRQAREAIDLATDDEELKLRVMENILELLSERFRRGQVSNELGTRMHRL 60
Query: 61 VKEISGEEDPFKDLKKLANEKAQELLSKV---LKGTPDLKEALKLSAIGNFIDFAIKGV- 116
+K+++G EDP+ D K+ NE A L V L+ DL+ +K++ GN IDF G+
Sbjct: 61 IKDMTGSEDPYLDEKRRCNEIALRFLPTVRDYLECHSDLESHVKVAITGNIIDFGALGLD 120
Query: 117 FDLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEV 176
FD +R +Q+ L I +RL A V + DN GEI+FD+ L++ L G V
Sbjct: 121 FDHDRGIQESLRAPLTINHVPLLEDRLREASEVLYLLDNTGEILFDRPLIEKLAGYDVSV 180
Query: 177 VYGVKGKPILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVIS 236
VKG+PILNDA +EDA E + + +++ G+D VG D EF + +++VI+
Sbjct: 181 KVAVKGEPILNDACMEDALEAGLDEVAEIVTTGTDSVGIVYSDLSDEFRDMLDGTELVIA 240
Query: 237 KGQANFETL---SSADRDLFFLLVAKCDPIGRETGGKRGE 273
KG N+E L S RD+F LL AKC I R+ G RG+
Sbjct: 241 KGMGNYEGLTEISDGSRDIFCLLNAKCSAIARDLGVARGD 280
dbj|BAA30687| (AP000006) 287aa long hypothetical protein [Pyrococcus horikoshii]
Length = 287
Score = 152 bits (380), Expect = 3e-36
Identities = 98/284 (34%), Positives = 157/284 (54%), Gaps = 14/284 (4%)
Query: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSL----KFLSQFDTFDRSPAYYAYF 56
M+ EC+ C+ NQ V+ ++M+I R++ K L++ + PA
Sbjct: 1 MKVQYECLTCMANQCQRIVEMAT----QDMDIRRRAMILAAKLLAKEYNENAIPAIAGSL 56
Query: 57 IQQIVKEISGEEDPFKDLKKLANEKAQELLSKVLKGTP-DLKEALKLSAIGNFIDFAIK- 114
I + + G +DPF + K + E A+++ + + D + A+KL+ IGN IDF++
Sbjct: 57 IFLELYKFLGNDDPFIEYKLKSEEMARKVADIIKRKLKLDFELAVKLAIIGNVIDFSVGF 116
Query: 115 GVFDLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGK 174
DLE E++K+L I D + E ++ A+++ I DN GE FD +L++ ++ +
Sbjct: 117 SPEDLEEEVEKMLKDKLYIDDSKELFEEVKRAENILYITDNVGEHYFDAILIEKIREISN 176
Query: 175 EVVYGVKGK--PILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSD 232
VY + GK PI+NDAT+ED + + +L KVI G+ VG L+ REF+E F +D
Sbjct: 177 AEVY-IAGKEGPIINDATVEDLKRAGLEKLGKVISTGTRIVGVPLKLVSREFMEAFNKAD 235
Query: 233 IVISKGQANFETLSSA-DRDLFFLLVAKCDPIGRETGGKRGELI 275
++I+KGQ NFETLS D +FFLL AKC + RE +G L+
Sbjct: 236 VIIAKGQGNFETLSEINDSRIFFLLKAKCPAVARELKVPKGALV 279
emb|CAB49508.1| (AJ248284) hypothetical protein [Pyrococcus abyssi]
Length = 287
Score = 147 bits (368), Expect = 8e-35
Identities = 93/281 (33%), Positives = 152/281 (53%), Gaps = 8/281 (2%)
Query: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI 60
M+ H EC+ C+ Q + E + + K +++ + PA +
Sbjct: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
Query: 61 VKEISGEEDPFKDLKKLANEKAQELLSKVLKGTPDL--KEALKLSAIGNFIDFAIK-GVF 117
+ + G +DPFK K+ +N A++++ K+LK D+ K A+KL+ IGN IDF++
Sbjct: 61 LYKFLGNDDPFKKYKERSNAIARDVV-KLLKEKLDIDFKTAVKLAIIGNVIDFSVGFSPE 119
Query: 118 DLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVV 177
LE E++K+L ++ I + D+ L ++ A+S+ + DN GE FD +L++ +K + + +
Sbjct: 120 KLEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIKEVSRAEL 179
Query: 178 YGVKGKP--ILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVI 235
Y + GK I+ND T+ED + R +++ G+ VG + D EF F SDI+I
Sbjct: 180 Y-IAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEESDIII 238
Query: 236 SKGQANFETLSS-ADRDLFFLLVAKCDPIGRETGGKRGELI 275
+KGQ NFETLS D +FFLL AKC + RE RG L+
Sbjct: 239 AKGQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALV 279
gi|2649480 (AE001027) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 288
Score = 138 bits (345), Expect = 4e-32
Identities = 86/286 (30%), Positives = 162/286 (56%), Gaps = 10/286 (3%)
Query: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI 60
M+ P C CL+ + K + ++ + SLK L++ + A+ A I +
Sbjct: 1 MKISPLCPSCLLGRVYYEAKLVTDDEDLISQCVDESLKILAENYSSRPINAHLATRIHRR 60
Query: 61 VKEISGEEDPFKDLKKLANEKAQELL---SKVLKGTPD-LKEALKLSAIGNFIDFAIKGV 116
V EI G EDP+ ++K ANE A+++L ++++G+ D K A+ +S +GN D+ ++G
Sbjct: 61 VYEILGVEDPYAEVKARANEVARQVLPLAKEIVEGSDDPFKTAVIVSIVGNNFDYGVQGH 120
Query: 117 FDLERELQKLLDK---DFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMG 173
+E E + L + + L + + ++ L + K V++ DNAGEI FD +L+K +K
Sbjct: 121 KVVEEEFRDFLKRKVQEGLKINDTERIKELSSGKVVYLT-DNAGEIFFDTLLMKEIKRRC 179
Query: 174 KEVVYGVKGKPILNDATLEDAEEVSMTRLC-KVIDNGSDKVGTWLEDCKREFVETFYSSD 232
+++ V+G+PI++DAT+EDA + ++ +++ NG +G +++ E + +D
Sbjct: 180 EKLTAVVRGRPIISDATIEDARLARVDKIADELLTNGKGAIGIIMDELPDETRKALEEAD 239
Query: 233 IVISKGQANFETLSSAD-RDLFFLLVAKCDPIGRETGGKRGELIFK 277
++++KG AN+E LS + + FLL AKC+P+ R+ G G+++ K
Sbjct: 240 LIVAKGMANYECLSDGSLKPIAFLLTAKCEPVARDIGVNVGDMVAK 285
gi|1293846 (U56966) coded for by C. elegans cDNA yk30b3.5; coded for by C.
elegans cDNA yk30b3.3 [Caenorhabditis elegans]
Length = 755
Score = 43.4 bits (100), Expect = 0.002
Identities = 63/270 (23%), Positives = 106/270 (38%), Gaps = 57/270 (21%)
Query: 58 QQIVKEISGEEDPFKDLKKLANEKAQELLSKVL------KGTPDLKEALKLSA----IGN 107
+QI++E G +D + K N A L +VL K T D K L+ + GN
Sbjct: 488 EQILQE-KGFDDIYVQKKHAENCTAIAELPRVLAKIDELKNTGDEKTVLEYVSRGLLAGN 546
Query: 108 FIDFAIKGVFDL---------ERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGE 158
D+ K V + + + + ++ +L +D F ++ + KSV I DN+G
Sbjct: 547 VFDWGAKEVVKMMNSESGLTFQTAIDHVENRPWLFDGFDSFYKKHKEYKSVLIFVDNSG- 605
Query: 159 IVFDKVL-----VKTLKGMGKEVVYGVKGKPILNDATLEDAEEVSMTRLCKVIDNGSDKV 213
FD +L + L G V+ P LND T + M L + N +
Sbjct: 606 --FDYILGIIPFARELLRNGSRVIICANTSPALNDLTYRE-----MVELAPELKNADSDL 658
Query: 214 GTWLEDCKREFVETFYSSDIVISK--GQANFETLSSADRDLF------------FLLVAK 259
+++ + FV+T S + ++ Q ET+ + DL F + K
Sbjct: 659 AKFIDSNQMMFVQTGQESPCMDARRVHQDLNETVKKFNTDLVVIEGMGRALHTNFNVQFK 718
Query: 260 CDP----------IGRETGGKRGELIFKYK 279
CD + GGK ++FK++
Sbjct: 719 CDSLKAAVIKTQWLADRLGGKMFSVVFKHE 748
gi|2649305 (AE001016) carbamoyl-phosphate synthase, large (or ammonia) subunit
(carB) [Archaeoglobus fulgidus]
Length = 1076
Score = 35.2 bits (79), Expect = 0.66
Identities = 22/54 (40%), Positives = 31/54 (56%), Gaps = 3/54 (5%)
Query: 150 FIIGDNAGEIVFDKVLVKTLKGMGKEVVYGVKGKPILNDATLEDAEEVSMTRLC 203
+++G A EIV+D+ +TL+ E + KPIL D LEDA EV + LC
Sbjct: 719 YVLGGRAMEIVYDE---ETLERYITEALEVSPEKPILIDKFLEDAIEVEVDALC 769
gi|2622097 (AE000872) carbamoyl-phosphate synthase, large subunit
[Methanobacterium thermoautotrophicum]
Length = 828
Score = 34.0 bits (76), Expect = 1.5
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 150 FIIGDNAGEIVFDKVLVKTLKGMGKEVVYGVKGKPILNDATLEDAEEVSMTRLCKVID 207
+++G A EIV+D V L+ +E V PIL D LEDA EV + LC D
Sbjct: 471 YVLGGRAMEIVYDDV---ELEEYMREAVRVSPEHPILVDKFLEDAIEVDVDALCDGTD 525
gi|2232354 (AF006081) UDPG glucosyltransferase [Solanum berthaultii]
Length = 465
Score = 34.0 bits (76), Expect = 1.5
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 201 RLCKVIDNGSDKVGTWLEDCKREFV-ETFYSSDIVISKGQANFETLSSADRDLFFLLVAK 259
R K D ++K+ TWL +C E V + S +++K Q T+ ++ F+LVAK
Sbjct: 251 RTGKYDDGANEKIFTWLNECPNESVLYVAFGSQKLLTKAQMEALTIGLEKSEVRFILVAK 310
pdb|2HFT| Mol_id: 1; Molecule: Human Tissue Factor; Chain: Null; Domain:
Extracellular Domain, Residues 1 - 219; Engineered: Yes
Length = 218
Score = 34.0 bits (76), Expect = 1.5
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 21 KLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQIVKEISGEEDPFKDLKKLANE 80
K+N+ E E + R+ FLS D F + Y Y+ K S E+ F+ KK A
Sbjct: 122 KVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYY----WKSSSQEKGEFRSGKKTAKT 177
Query: 81 KAQELLSKVLKG 92
E L V KG
Sbjct: 178 NTNEFLIDVDKG 189
sp|P39336|YJGL_ECOLI HYPOTHETICAL 71.1 KD PROTEIN IN PYRL-ARGI INTERGENIC REGION (O616)
>gi|1361191|pir||S56478 hypothetical protein o616 -
Escherichia coli >gi|537094 (U14003) ORF_o616
[Escherichia coli] >gi|1790702 (AE000496) orf,
hypothetical protein [Escherichia coli]
Length = 616
Score = 34.0 bits (76), Expect = 1.5
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 44 DTFDRSPAYYAYFIQQIVKEISGEEDPFKDLKKLANEKAQELLSKVLKGTPD--LKEAL 100
D F ++P ++ Q++K GE+ F +LK N+ +E ++LK PD +KE L
Sbjct: 503 DFFMKNPEMINWYFPQLLKSYEGEKIYFDNLKYDLNDNDKESNKEILKNQPDNVIKEKL 561
pir||JC6009 surface-located membrane protein lmp3 - Mycoplasma hominis (SGC3)
>gi|1197336|emb|CAA64858| (X95601) Lmp3 protein
[Mycoplasma hominis]
Length = 1302
Score = 33.6 bits (75), Expect = 1.9
Identities = 54/220 (24%), Positives = 95/220 (42%), Gaps = 25/220 (11%)
Query: 22 LNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYF-IQQIVKEISGEEDPFKDLKKLANE 80
LNL K+ + E ++ F+++ D S A+ + +++ EI E K L+ L +
Sbjct: 45 LNLIKKLDNEGQKKANDFIARQDKKFNSTAFKNHSNTSKLIDEI--EIFSKKILENLQKD 102
Query: 81 KAQEL--LSKVLKGTPDLKEALKLSAIGNFIDFAIKGVFDLEREL-QKLLDKDFLIFDYD 137
+ Q L L+K+ K DL+ + S G +D + D ++ L + +D I
Sbjct: 103 EKQRLEELNKLNKLRLDLQNLIN-SNDGQNVDSS-----DAKKALNENQIDDSLPIDKIK 156
Query: 138 KFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVVYGVKGKPILNDATLEDAEEV 197
K E LENAK + NA + K+ + K + + LED +EV
Sbjct: 157 KTNENLENAKKELLNKINAERELQSKI-------------FNEKKQELKRVLDLEDTKEV 203
Query: 198 SMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVISK 237
T+ KV + + +ED K + +E ++ + SK
Sbjct: 204 DFTKEQKVFIETNINETSSIEDIKNKIIEVEKATSSLTSK 243
pir||S28724 hypothetical protein - Methanococcus vannielii
>gi|44719|emb|CAA27650| (X04021) ORF634 (aa 1-634)
[Methanococcus vannielii]
Length = 634
Score = 33.6 bits (75), Expect = 1.9
Identities = 30/116 (25%), Positives = 54/116 (45%), Gaps = 20/116 (17%)
Query: 94 PDLKEALKLSAIGNFIDFAIKGVFDLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIG 153
P EAL+++A+ R + K+ +D+ + + K ERL+NA+ VF+ G
Sbjct: 244 PPFSEALEITAV---------------RPITKVSLEDYNLSEDLK--ERLDNAEGVFVSG 286
Query: 154 -DNAGEIVFDKVLVKTLKGMGK--EVVYGVKGKPILNDATLEDAEEVSMTRLCKVI 206
+G+ F L + K MGK + + + + N+ T E SM + C ++
Sbjct: 287 APGSGKSTFVAALAERFKNMGKIVKTMESPRDLQVGNEITQYAPLEGSMEKTCDIL 342
ref|NP_011222.1|SMC2| nuclear protein related to ScII (chicken), XCAPE (xenopus), and cut14
(S. pombe); involved in chromosome segregation and
condensation, interacts with Smc1p and Trf4p; Smc2p
>gi|730753|sp|P38989|SMC2_YEAST CHROMOSOME SEGREGATION
PROTEIN SMC2 (DA-BOX PROTEIN SMC2)
>gi|1362470|pir||A56157 chromosome segregation protein
SMC2 - yeast (Saccharomyces cerevisiae) >gi|468040
(U05820) Smc2p [Saccharomyces cerevisiae]
>gi|836786|dbj|BAA09270.1| (D50617) chromosome
segregation protein SMC2p [Saccharomyces cerevisiae]
>gi|893426|dbj|BAA08042| (D44602) DA-box protein Smc2p
[Saccharomyces cerevisiae]
Length = 1170
Score = 33.2 bits (74), Expect = 2.5
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 26/188 (13%)
Query: 16 LNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQIVKEISGEE-DPFKDL 74
LN K EK +E + +FL FD ++ IVK+ G + D +++
Sbjct: 919 LNKYKSNTNNMEKIIEDLRQKHEFLEDFD-----------LVRNIVKQNEGIDLDTYRER 967
Query: 75 KKLANEKAQELLSKVLKGTPDLKEAL--KLSAIGNFIDFAIKGVFDLERELQKLLD--KD 130
K NEK QEL KV ++ E + K +A+ I K ++ + KL + ++
Sbjct: 968 SKQLNEKFQELRKKVNPNIMNMIENVEKKEAALKTMIKTIEKDKMKIQETISKLNEYKRE 1027
Query: 131 FLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVVYGVKGKPILNDAT 190
L+ ++K N I D + K + GK+V G++ K L +
Sbjct: 1028 TLVKTWEKVTLDFGN-----IFAD-----LLPNSFAKLVPCEGKDVTQGLEVKVKLGNIW 1077
Query: 191 LEDAEEVS 198
E E+S
Sbjct: 1078 KESLIELS 1085
gb|AAF18954.1|AF164515_3 (AF164515) Cps7G [Streptococcus suis]
Length = 404
Score = 32.8 bits (73), Expect = 3.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 135 DYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVVYGVKGKP 184
DYDK +EN +S+++ DN + +F +V++ L + KGKP
Sbjct: 138 DYDKIYTIVENKRSLYVASDNKWQKLFGRVII--LSDSAHSLGASYKGKP 185
gi|4102237 (AF011451) p55-L5 [Borrelia burgdorferi]
Length = 476
Score = 32.8 bits (73), Expect = 3.3
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 126 LLDKDFLIFDYDKFLER----LENAKSVFIIGD-NAGEIVFDKVLVKTLKGMGKEVVYGV 180
LL FL+ + DKF+ R ++N +++ I GD +A I ++ +TLK G V Y +
Sbjct: 53 LLHNPFLLKNIDKFINRINKAIKNNENILIFGDKDADGIXATIIMYETLKDFGLNVSYXI 112
Query: 181 KGKPI---LNDATLEDAEEVSMTRLCKVIDNGSDKV 213
L++ + A E ++ L +DNG +
Sbjct: 113 PSNGEFYGLSNELINTALEKKIS-LIITVDNGISSI 147
gi|4101624 (AF005057) unknown [Borrelia burgdorferi]
Length = 476
Score = 32.8 bits (73), Expect = 3.3
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 126 LLDKDFLIFDYDKFLER----LENAKSVFIIGD-NAGEIVFDKVLVKTLKGMGKEVVYGV 180
LL FL+ + DKF+ R ++N +++ I GD +A I ++ +TLK G V Y +
Sbjct: 53 LLHNPFLLKNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKI 112
Query: 181 KGKPI---LNDATLEDAEEVSMTRLCKVIDNGSDKV 213
L++ + A E ++ L +DNG +
Sbjct: 113 PSNGEFYGLSNELINTALEKKIS-LIITVDNGISSI 147
emb|CAA16972| (AL021811) putative protein [Arabidopsis thaliana]
Length = 838
Score = 32.8 bits (73), Expect = 3.3
Identities = 31/164 (18%), Positives = 65/164 (38%), Gaps = 28/164 (17%)
Query: 69 DPFKDLKKLANEKAQELLSKVLKGTPDLKEALKLSAI------GNFIDFAIKGVFDLE-- 120
D ++ +K+ NE + +L +L+ + E +L + N D+ + DL
Sbjct: 608 DAYRSIKQRENEASLAVLPDLLEELDSMSEEARLLTLIEGVLAANIFDWGSRACVDLYHK 667
Query: 121 -------RELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKV-LVKTLKGM 172
R + + + + + D+D F ER+ + G+++ + L +
Sbjct: 668 GTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGS----------GDVILGMLPLAREFLRR 717
Query: 173 GKEVVYGVKGKPILNDATLEDAEEV--SMTRLCKVIDNGSDKVG 214
G EVV P LND T + ++ + C ++ ++ G
Sbjct: 718 GTEVVLVANSLPALNDVTAMELPDIVAGAAKHCDILRRAAEMGG 761
gi|2688156 (AE001136) single-stranded-DNA-specific exonuclease (recJ)
[Borrelia burgdorferi]
Length = 708
Score = 32.8 bits (73), Expect = 3.3
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 126 LLDKDFLIFDYDKFLER----LENAKSVFIIGD-NAGEIVFDKVLVKTLKGMGKEVVYGV 180
LL FL+ + DKF+ R ++N +++ I GD +A I ++ +TLK G V Y +
Sbjct: 53 LLHNPFLLKNIDKFINRINKAIKNNENILIFGDKDADGITATIIMYETLKDFGLNVSYKI 112
Query: 181 KGKPI---LNDATLEDAEEVSMTRLCKVIDNGSDKV 213
L++ + A E ++ L +DNG +
Sbjct: 113 PSNGEFYGLSNELINTALEKKIS-LIITVDNGISSI 147
gi|2983518 (AE000719) L-seryl-tRNA(ser) selenium transferase [Aquifex
aeolicus]
Length = 452
Score = 32.5 bits (72), Expect = 4.3
Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 107 NFIDFAIKGVFDLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLV 166
NFI G +LE L++ + I +K+L L A+S F++ +NAG + LV
Sbjct: 95 NFISEIANGYSNLEYNLEEG-KRGSRIAHIEKYLNELTGAESSFVVNNNAGAV----FLV 149
Query: 167 KTLKGMGKEVV 177
GKEV+
Sbjct: 150 LNTLAEGKEVI 160
emb|CAB39901.1| (AL049498) myosin ii [Schizosaccharomyces pombe]
Length = 1526
Score = 31.7 bits (70), Expect = 7.5
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 30/196 (15%)
Query: 61 VKEISGEEDPFKDLKKLANEKAQELLSKVLKGTPDLKEALKLSAIGNFIDFAIKGVFDLE 120
VK++ E + ++ +EL VLKG +L L N+++ +K + L+
Sbjct: 1036 VKKLERENSTLISDVSILKQQKEEL--SVLKGVQELT-INNLEEKVNYLEADVKQLPKLK 1092
Query: 121 RELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVVYGV 180
+EL+ L DKD L L+ +N + + K + +K + KE+
Sbjct: 1093 KELESLNDKDQLY-----QLQATKNKELEAKV----------KECLNNIKSLTKELENKE 1137
Query: 181 KGKPILNDATLE--DAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVISKG 238
+ L+DA+L+ + +E+ L KV D LE+ K+++ E +
Sbjct: 1138 EKCQNLSDASLKYIELQEIHENLLLKVSD---------LENYKKKY-EGLQLDLEGLKDV 1187
Query: 239 QANFETLSSADRDLFF 254
NF+ LS RDL F
Sbjct: 1188 DTNFQELSKKHRDLTF 1203
emb|CAA21588.1| (AL032632) predicted using Genefinder; similar to Myosin head
(motor domain); cDNA EST yk209b12.5 comes from this
gene; cDNA EST yk248g5.3 comes from this gene; cDNA EST
yk248g5.5 comes from this gene; cDNA EST yk398h10.3
com...
Length = 1413
Score = 31.7 bits (70), Expect = 7.5
Identities = 32/143 (22%), Positives = 66/143 (45%), Gaps = 15/143 (10%)
Query: 16 LNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQIVKEISGEEDPFKDLK 75
LN K L + + K++E + QF + P Y Y + + + + +++ ++L+
Sbjct: 725 LNIQKDL-IERRKKLEAVVTIQDNVRQFAELSQWPWYRIYHLTRGLIPRNRDKERIEELE 783
Query: 76 KLANEKAQELLSKVLKGTPDLKEALKLSAIGNFIDFAIKGVFDLEREL--------QKLL 127
+ +E+ +K LKE LKLS + +D +++EL +KLL
Sbjct: 784 NEKLKLEEEIQEMEIKNEEALKENLKLSML---LDREKSEKVKVQKELEEVEKQGREKLL 840
Query: 128 DKDFLIFDYDKFLERLENAKSVF 150
+K+ ++ K +E +E + +F
Sbjct: 841 EKE---REFRKTMEEMEQNEEIF 860
gi|2690228 (AE000790) antigen, S1 [Borrelia burgdorferi]
Length = 417
Score = 31.7 bits (70), Expect = 7.5
Identities = 54/209 (25%), Positives = 84/209 (39%), Gaps = 25/209 (11%)
Query: 72 KDLKKLANEKAQELLSKVLKGTPDLKEALKLSAIGNF----IDFAIKGVFDLERELQKLL 127
+DLK + Q L+S K LK S + NF D +K D +++LQ L
Sbjct: 25 EDLKSTTSNNKQNLISNEKKSLNSKNNRLKDSRLSNFESKKNDQTLKKSKDFKKDLQTLR 84
Query: 128 D-KDFLIFDYDKF---LERLENAKSVFIIGD--NAGEIVFDKVLVKTLKGMGKEVVYGVK 181
+ K+ + D D+ E L+N++S+ N G+ + K L LK E+
Sbjct: 85 NSKNLMPKDLDQSSNDFENLDNSESLQEASSKHNIGKSRYGKAL---LKNDHDEIWI--- 138
Query: 182 GKPILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYS----SDIVISK 237
P LN LE+ + + D +G WL + V+ YS + +I
Sbjct: 139 --PHLN---LEEDKNFEFFKKSLQNDENRYALGGWLLNNDEVLVKYRYSEKDVNQFLIDI 193
Query: 238 GQANFETLSSADRDLFFLLVAKCDPIGRE 266
G+ + LSS L L+ D RE
Sbjct: 194 GKKRWGDLSSKMSTLVRLIGNYSDKSDRE 222
gi|1763304 (U75357) myosin II [Schizosaccharomyces pombe]
Length = 1526
Score = 31.7 bits (70), Expect = 7.5
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 30/196 (15%)
Query: 61 VKEISGEEDPFKDLKKLANEKAQELLSKVLKGTPDLKEALKLSAIGNFIDFAIKGVFDLE 120
VK++ E + ++ +EL VLKG +L L N+++ +K + L+
Sbjct: 1036 VKKLERENSTLISDVSILKQQKEEL--SVLKGVQELT-INNLEEKVNYLEADVKQLPKLK 1092
Query: 121 RELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVVYGV 180
+EL+ L DKD L L+ +N + + K + +K + KE+
Sbjct: 1093 KELESLNDKDQLY-----QLQATKNKELEAKV----------KECLNNIKSLTKELENKE 1137
Query: 181 KGKPILNDATLE--DAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVISKG 238
+ L+DA+L+ + +E+ L KV D LE+ K+++ E +
Sbjct: 1138 EKCQNLSDASLKYIELQEIHENLLLKVSD---------LENYKKKY-EGLQLDLEGLKDV 1187
Query: 239 QANFETLSSADRDLFF 254
NF+ LS RDL F
Sbjct: 1188 DTNFQELSKKHRDLTF 1203
pir||I40296 S1 protein - Lyme disease spirochete >gi|1063417 (L34016) S1 gene
product [Borrelia burgdorferi]
Length = 417
Score = 31.7 bits (70), Expect = 7.5
Identities = 54/209 (25%), Positives = 84/209 (39%), Gaps = 25/209 (11%)
Query: 72 KDLKKLANEKAQELLSKVLKGTPDLKEALKLSAIGNF----IDFAIKGVFDLERELQKLL 127
+DLK + Q L+S K LK S + NF D +K D +++LQ L
Sbjct: 25 EDLKSTTSNNKQNLISNEKKSLNSKNNRLKDSRLSNFESKKNDQTLKKSKDFKKDLQTLR 84
Query: 128 D-KDFLIFDYDKF---LERLENAKSVFIIGD--NAGEIVFDKVLVKTLKGMGKEVVYGVK 181
+ K+ + D D+ E L+N++S+ N G+ + K L LK E+
Sbjct: 85 NSKNLMPKDLDQSSNDFENLDNSESLQEASSKHNIGKSRYGKAL---LKNDHDEIWI--- 138
Query: 182 GKPILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYS----SDIVISK 237
P LN LE+ + + D +G WL + V+ YS + +I
Sbjct: 139 --PHLN---LEEDKNFEFFKKSLQNDENRYALGGWLLNNDEVLVKYRYSEKDVNQFLIDI 193
Query: 238 GQANFETLSSADRDLFFLLVAKCDPIGRE 266
G+ + LSS L L+ D RE
Sbjct: 194 GKKRWGDLSSKMSTLVRLIGNYSDKSDRE 222
ref|NP_005487.1|| chromosome-associated polypeptide C >gi|4092846|dbj|BAA73535.1|
(AB019987) chromosome-associated polypeptide-C [Homo
sapiens]
Length = 1288
Score = 31.3 bits (69), Expect = 9.8
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 16 LNAVKKLNLPK---EKEMEIATRSLKFLSQ-FDTFDRSPAYYAYFIQQIVKEISGEEDPF 71
LN VK + K E E IA L ++ F + YY Y +Q+ + E+ +++
Sbjct: 285 LNRVKMVEKEKDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYELQKRIAEMETQKEKI 344
Query: 72 KDLKKLANEKAQELLSKVLKGTPDLKEA-LKLSAIGNFID 110
+ K NEK+ L +++ D+K+ KL+ I FI+
Sbjct: 345 HEDTKEINEKSNILSNEMKAKNKDVKDTEKKLNKITKFIE 384
gi|3851586 (AF092564) chromosome-associated protein-C [Homo sapiens]
Length = 1202
Score = 31.3 bits (69), Expect = 9.8
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 16 LNAVKKLNLPK---EKEMEIATRSLKFLSQ-FDTFDRSPAYYAYFIQQIVKEISGEEDPF 71
LN VK + K E E IA L ++ F + YY Y +Q+ + E+ +++
Sbjct: 199 LNRVKMVEKEKDALEGEKNIAIEFLTLENEIFRKKNHVCQYYIYELQKRIAEMETQKEKI 258
Query: 72 KDLKKLANEKAQELLSKVLKGTPDLKEA-LKLSAIGNFID 110
+ K NEK+ L +++ D+K+ KL+ I FI+
Sbjct: 259 HEDTKEINEKSNILSNEMKAKNKDVKDTEKKLNKITKFIE 298
ref|NP_011726.1|YGR210C| Ygr210cp >gi|1176059|sp|P42942|YG4I_YEAST HYPOTHETICAL 45.2 KD
GTP-BINDING PROTEIN IN TRX1-ZPR1 INTERGENIC REGION
>gi|1077194|pir||S53933 probable membrane protein
YGR210c - yeast (Saccharomyces cerevisiae)
>gi|790501|emb|CAA89003| (Z49133) unknown [Saccharomyces
cerevisiae] >gi|1165215 (U40843) ORFS7; Method:
conceptual translation supplied by author.
[Saccharomyces cerevisiae] >gi|1323377|emb|CAA97237|
(Z72995) ORF YGR210c [Saccharomyces cerevisiae]
Length = 411
Score = 31.3 bits (69), Expect = 9.8
Identities = 41/161 (25%), Positives = 68/161 (41%), Gaps = 13/161 (8%)
Query: 56 FIQQIVKEISGEEDP-FKDLKKLANEKAQELLSKVLKGTPDLKEALKLSAIGNFIDFAIK 114
+I ++VK E+ P L K+ + A + +SK++ PD K L + F+ K
Sbjct: 208 WITRVVKSFMMEKFPTVLALNKIDHPDADKNVSKIMLKYPDTKAVLTSAVTEVFLRKLKK 267
Query: 115 GVFDLERELQKLLD-----KDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTL 169
F L E + +D D L DK L R+EN + + + + +V +VL
Sbjct: 268 QGFILYEEGTEFVDTFEDEPDKLKPLDDKILNRIENIRDLVLYRFGSTGVV--QVLQAAT 325
Query: 170 KGMGKEVVYGVKGKPILNDATLEDAEEVSMTRLCKVIDNGS 210
+G VY VK N T ++ R C ++ G+
Sbjct: 326 DILGLIPVYTVK-----NIQTFTGGNGTNVFRDCFLVKRGT 361
sp|P10394|POL4_DROME RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412 [CONTAINS:
PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
>gi|74644|pir||GNFF42 retrovirus-related pol polyprotein
- fruit fly (Drosophila melanogaster) transposon 412
>gi|1335652|emb|CAA27750| (X04132) ORF 4 (RNA2)
[Drosophila melanogaster]
Length = 1237
Score = 31.3 bits (69), Expect = 9.8
Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 30/220 (13%)
Query: 13 NQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYF-IQQIVKEISGEEDPF 71
N +A+ ++ + + K+ I LK ++F + +S A +Q+ KEI+ E + +
Sbjct: 726 NHVADALSRITIKELKD--ITGNILKVTTRFQSRQKSCAGKEQLDLQKQTKEIASEPNVY 783
Query: 72 KDLKKLANEKAQELLSKVLKGTPDL-KEALKLSAIGNFIDFAIKGVFDLERELQKLLDKD 130
+ + N++ +++++ L + L K K+ A + D G+ DL
Sbjct: 784 E---VITNDEVRKVVTLQLNDSICLFKHGKKIIARYDVGDLYTNGILDL----------- 829
Query: 131 FLIFDYDKFLERLENAKSVFIIGD---NAGEIVFDKVLVKTLKGMGKEVVYGVKG---KP 184
D+FL+RLE ++ I + +F+ V + K MG +++ +K P
Sbjct: 830 ------DQFLQRLELQAGIYDISQIKMAPWKKIFEHVSIDKFKNMGNKILKNLKVALLNP 883
Query: 185 ILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREF 224
+ ++ E + T I G + L KR +
Sbjct: 884 VTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHY 923
gi|294207 (L16863) sequence identical to orf152 of Sachay et al (1993; Exp.
Mycol. 17, 7-23) located ca. 18 kb downstream adjacent
to cox2, but encoded on opposite strand; putative
[Phytophthora megasperma]
Length = 152
Score = 31.3 bits (69), Expect = 9.8
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 115 GVFDLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVF 161
GV DLER LQ LLD L+ D D F + N + + + +N+ ++F
Sbjct: 70 GVSDLER-LQTLLDSLMLVVDLDLFRDVYLNTQKILLGSENSLNMLF 115
gi|294200 (L04457) wholly encoded in short inverted repeat; ORF152; putative
[Phytophthora megasperma]
Length = 152
Score = 31.3 bits (69), Expect = 9.8
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 115 GVFDLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVF 161
GV DLER LQ LLD L+ D D F + N + + + +N+ ++F
Sbjct: 70 GVSDLER-LQTLLDSLMLVVDLDLFRDVYLNTQKILLGSENSLNMLF 115
pir||I40661 methylaspartate mutase (EC 5.4.99.1) conponent L - Clostridium
cochlearium >gi|580977|emb|CAA56922| (X80997)
methylaspartate mutase [Clostridium cochlearium]
Length = 463
Score = 31.3 bits (69), Expect = 9.8
Identities = 46/178 (25%), Positives = 69/178 (37%), Gaps = 19/178 (10%)
Query: 81 KAQELLSKVLKGTPD--LKEALKLSAIGNFIDFAIKGVFDLERELQKLLDKD-----FLI 133
KA E LSK L+G +K+ SA G AI V DL E K + +
Sbjct: 49 KAYEKLSKQLEGKEVNFVKKLACSSAAGGLKMIAIGLVPDLTAEAAKRAAQGAGARILNV 108
Query: 134 FDYDKFLERLENAKS-----VFIIGDNAG---EIVFDKVLVKTLKGMGKEVVYGVKGKPI 185
+ Y+ L+ +E KS + + G G E + + + +V V G
Sbjct: 109 YSYELSLKEIEEIKSSNLDIILLAGGTDGGNKECIIHNAKMLAKHNINLPIV--VAGNKA 166
Query: 186 LNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVISKGQANFE 243
D E E ++ KV DN K+ + RE + + IV +KG +N E
Sbjct: 167 AADTVSEILTEANIFH--KVTDNVMPKLNILNVEPAREEIRQIFMKRIVQAKGMSNAE 222
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.319 0.139 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73253469
Number of Sequences: 444417
Number of extensions: 2955369
Number of successful extensions: 9041
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 9014
Number of HSP's gapped (non-prelim): 35
length of query: 283
length of database: 136,724,657
effective HSP length: 55
effective length of query: 228
effective length of database: 112,281,722
effective search space: 25600232616
effective search space used: 25600232616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)
