Score E
Sequences producing significant alignments: (bits) Value
gi|2983414 (AE000712) exopolyphosphatase [Aquifex aeolicus] 584 e-166
dbj|BAA18781| (D90917) exopolyphosphatase [Synechocystis sp.] 122 4e-27
gb|AAD07341.1| (AE000546) guanosine pentaphosphate phosphoh... 109 3e-23
gi|4154784 (AE001463) GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPH... 108 5e-23
gi|3452466 (AF083928) exopolyphosphatase [Vibrio cholerae] 103 2e-21
gi|3249102 (AC003114) Similar to exopolyphosphatase gb|1653... 102 3e-21
emb|CAB42674.1| (AL049819) putative DNA-binding protein [St... 100 2e-20
gb|AAD29107.1|AF053463_1 (AF053463) exopolyphosphatase; PPX... 100 2e-20
dbj|BAA74460.1| (AB022715) exopolyphosphatase [Pseudomonas ... 100 2e-20
emb|CAA18923.1| (AL023514) hypothetical protein MLCB4.02 [M... 98 7e-20
gi|3550418 (AF085682) exopolyphosphatase [Salmonella typhim... 95 8e-19
emb|CAB06853| (Z92539) hypothetical protein Rv1026 [Mycobac... 94 1e-18
gi|3820537 (AF080002) exopolyphosphatase Ppx [Heliobacillus... 93 2e-18
gi|146252 (M83316) pppGpp phosphohydrolase [Escherichia coli] 87 2e-16
sp|P29014|PPX_ECOLI EXOPOLYPHOSPHATASE (METAPHOSPHATASE) >g... 87 2e-16
sp|P25552|GPPA_ECOLI GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHA... 87 2e-16
gb|AAF12188.1|AE001862_14 (AE001862) exopolyphosphatase [De... 85 5e-16
sp|P54882|Y496_MYCLE HYPOTHETICAL 43.4 KD PROTEIN B2168_C2_... 85 7e-16
sp|P44828|PPX_HAEIN PUTATIVE EXOPOLYPHOSPHATASE (METAPHOSPH... 85 9e-16
dbj|BAA16392| (D90880) exopolyphosphatase PPX [Escherichia ... 83 2e-15
emb|CAB61547.1| (AL133171) putative phosphatase [Streptomyc... 80 3e-14
sp|Q11161|Y496_MYCTU HYPOTHETICAL 34.9 KD PROTEIN RV0496 >g... 80 3e-14
ref|NP_011262.1|RTG2| involved in interorganelle communicat... 66 5e-10
emb|CAA14755| (AJ235271) GUANOSINE PENTAPHOSPHATE PHOSPHOHY... 61 1e-08
gb|AAD35287.1|AE001704_8 (AE001704) guanosine pentaphosphat... 58 9e-08
gb|AAD29114.1|AF087931_3 (AF087931) exopolyphosphatase [Pse... 43 0.004
gi|2707899 (AF038380) FtsA [Pseudomonas putida] 38 0.084
emb|CAA69473| (Y08256) orf c06028 [Sulfolobus solfataricus] 36 0.32
ref|NP_012117.1|YIL149C| Yil149cp >gi|731882|sp|P40457|YIO9... 36 0.32
gi|2650176 (AE001073) signal-transducing histidine kinase, ... 36 0.42
gb|AAF00610.1|AF156781_1 (AF156781) apyrase [Dolichos biflo... 35 0.73
dbj|BAA29355.1| (AP000001) 279aa long hypothetical protein ... 35 0.73
emb|CAA90755.1| (Z50872) weak similarity with chromosome se... 35 0.95
emb|CAB49181.1| (AJ248283) hypothetical protein [Pyrococcus... 34 1.2
dbj|BAA30025| (AP000004) 879aa long hypothetical purine NTP... 34 1.2
gi|2688743 (AE001179) polyribonucleotide nucleotidyltransfe... 34 1.2
sp|O32861|FTSY_MYCHO CELL DIVISION PROTEIN FTSY HOMOLOG >gi... 34 2.1
sp|P30427|PLEC_RAT PLECTIN >gi|1561642|emb|CAA42169| (X5960... 34 2.1
gi|3560487 (AF023852) ElpB1 [Borrelia burgdorferi] 33 2.8
dbj|BAA32513.1| (AB016975) outer surface protein A (OspA) [... 33 3.7
gi|2983085 (AE000689) general secretion pathway protein G [... 32 4.8
gi|552083 (L28953) B-box binding factor-1 [Drosophila melan... 32 4.8
emb|CAB63770.1| (AL133654) hypothetical protein [Homo sapiens] 32 6.3
dbj|BAA79100.1| (AP000058) 699aa long hypothetical DNA repl... 32 6.3
dbj|BAA32515.1| (AB016977) outer surface protein (OspA) [Bo... 32 6.3
sp|O42296|APA1_ANAPL APOLIPOPROTEIN A-I PRECURSOR (APO-AI) ... 32 6.3
dbj|BAA13639| (D88539) synaptonemal complex protein 1 [Mus ... 32 6.3
gi|735904 (L41069) testicular protein [Mus musculus] 32 6.3
sp|Q62209|SCP1_MOUSE SYNAPTONEMAL COMPLEX PROTEIN 1 (SCP-1 ... 32 6.3
gi|540268 (U14635) weak similarity to myosin heavy chain [C... 32 6.3
dbj|BAA32516.1| (AB016978) outer surface protein A (OspA) [... 32 8.3
gi|2983414 (AE000712) exopolyphosphatase [Aquifex aeolicus]
Length = 312
Score = 584 bits (1489), Expect = e-166
Identities = 297/312 (95%), Positives = 297/312 (95%)
Query: 1 MSLDNKPIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRI 60
MSLDNKPIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRI
Sbjct: 1 MSLDNKPIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRI 60
Query: 61 EETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEG 120
EETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEG
Sbjct: 61 EETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEG 120
Query: 121 RYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPP 180
RYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPP
Sbjct: 121 RYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPP 180
Query: 181 TEEEVKRFFEFLEKELSKVKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVLTYGQ 240
TEEEVKRFFEFLEKELSKVKKPVD EYNVYPYDPQKVHGKVLTYGQ
Sbjct: 181 TEEEVKRFFEFLEKELSKVKKPVDTIVGLGGTITTLAALEYNVYPYDPQKVHGKVLTYGQ 240
Query: 241 IKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREG 300
IKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREG
Sbjct: 241 IKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREG 300
Query: 301 VLVSEVLKENHS 312
VLVSEVLKENHS
Sbjct: 301 VLVSEVLKENHS 312
dbj|BAA18781| (D90917) exopolyphosphatase [Synechocystis sp.]
Length = 540
Score = 122 bits (303), Expect = 4e-27
Identities = 92/311 (29%), Positives = 147/311 (46%), Gaps = 16/311 (5%)
Query: 11 VASIDIGSYSVRLTIAQIKD--GKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLK 68
+A+IDIG+ SV + I +I +I+ LG + ++ L + I LK
Sbjct: 14 LAAIDIGTNSVHMVIVRIDPVLATFTIVAREKDTVRLGDRDPQSNNLTPAAMNRAIAALK 73
Query: 69 EYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVA 128
+L +VE + AVAT A R AKN ++FL RV+ EVGL V++I+ +E R YL V
Sbjct: 74 RCVELAKGLEVENIIAVATSATREAKNGQDFLTRVQTEVGLTVDLISGPEEARRIYLGV- 132
Query: 129 YSLKPEGEV--CVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDP--PTEEE 184
+S EV ++D GGGSTE + VR + S +G V LT+ F DP TE
Sbjct: 133 FSCMDFHEVPHVMIDIGGGSTELILADRRDVRFLSSTKVGAVRLTQDFVHSDPIDATELA 192
Query: 185 VKRFF--EFLEKELSKVK------KPVDXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVL 236
V R + LE+ + ++K + P + G +
Sbjct: 193 VLRAYVRGMLERPVDEIKQRLKGGEKAQMVGTSGTIETLATMTALQKQKEVPNPIQGYSI 252
Query: 237 TYGQIKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWG 296
+ +++W + +ER + + DRRA++IL G I L+ + + E D + + +
Sbjct: 253 SQKDVEEWVKKLAGLNCQERFE-VAGLSDRRAEIILPGAVILLEAMTMLELDSITICERA 311
Query: 297 LREGVLVSEVL 307
LREG++V +L
Sbjct: 312 LREGMIVDWML 322
gb|AAD07341.1| (AE000546) guanosine pentaphosphate phosphohydrolase (gppA)
[Helicobacter pylori 26695]
Length = 484
Score = 109 bits (270), Expect = 3e-23
Identities = 83/300 (27%), Positives = 144/300 (47%), Gaps = 9/300 (3%)
Query: 14 IDIGSYSVRLTIAQIKD--GKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYK 71
IDIGS SVRL + + G + + ++ G LQE ++ ++ L E+K
Sbjct: 8 IDIGSNSVRLAVFKKTSQFGFYLLFETKSKVRISEGCYAFNGILQEIPMQRAVKALSEFK 67
Query: 72 KLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSL 131
++ ++K +++ VAT A+R A N EF+ RVK+ GL +++I ++E Y +A A L
Sbjct: 68 EIALKYKSKKILCVATSAVRDAPNRLEFVARVKKACGLQIKIIDGQKEALYGGIACANLL 127
Query: 132 KPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEF 191
+ +D GGGSTE + K++++ISL +G + + E F +D EVK F
Sbjct: 128 HKNSGI-TIDIGGGSTECALIEKGKIKDLISLDVGTIRIKEMFLDKD----LEVKLAKAF 182
Query: 192 LEKELSKVKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVLTYGQIKKWFDTFKEI 251
++KE+SK+ + Y +HG + + + + K +
Sbjct: 183 IQKEVSKLPFKHKNAFGVGGTIRALSKVLMKRFCYPIDSLHGYEIDAHKNLAFIE--KIV 240
Query: 252 PSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREGVLVSEVLKENH 311
+E R V + R I +G I LE + +I S G+REGV +S++L+ ++
Sbjct: 241 MLKEDQLRLLGVNEERLDSIRSGALILSVVLEHLKTSLMITSGVGVREGVFLSDLLRHHY 300
gi|4154784 (AE001463) GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 108 bits (268), Expect = 5e-23
Identities = 82/300 (27%), Positives = 144/300 (47%), Gaps = 9/300 (3%)
Query: 14 IDIGSYSVRLTIAQIKD--GKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYK 71
IDIGS SVRL + + G + + ++ G LQE ++ ++ L E+K
Sbjct: 8 IDIGSNSVRLAVFKKTSQFGFYLLFETKSKVRISEGCYAFKGVLQEIPMQRAVKALSEFK 67
Query: 72 KLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSL 131
++ ++K +++ VAT A+R A N EF+ RVK+ GL +++I ++E Y +A A L
Sbjct: 68 EIALKYKSKKILCVATSAVRDAPNRLEFVARVKKACGLQIKIIDGQKEALYGGIACANLL 127
Query: 132 KPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEF 191
+ +D GGGSTE + K++++ISL +G + + E F +D +VK F
Sbjct: 128 HKNSGI-TIDIGGGSTECALIEKGKIKDLISLDVGTIRIKEMFLDKD----LDVKLAKAF 182
Query: 192 LEKELSKVKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVLTYGQIKKWFDTFKEI 251
++KE+SK+ + Y +HG + + + + K +
Sbjct: 183 IQKEVSKLPFKHKNAFGVGGTIRALSKVLMKRFDYPIDSLHGYEIDAHKNLAFIE--KIV 240
Query: 252 PSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREGVLVSEVLKENH 311
+E R V + R I +G I LE + +I S G+REGV +S++L+ ++
Sbjct: 241 MLKEDKLRLLGVNEERLDSIRSGALILSVVLEHLKTSLMITSGVGVREGVFLSDLLRHHY 300
gi|3452466 (AF083928) exopolyphosphatase [Vibrio cholerae]
Length = 500
Score = 103 bits (255), Expect = 2e-21
Identities = 73/292 (25%), Positives = 129/292 (44%), Gaps = 2/292 (0%)
Query: 11 VASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEY 70
+A+ID+GS S + +A++ D L +I + L + E L E+ I+ ++ L +
Sbjct: 11 IAAIDLGSNSFHMVVAKVVDQDLQLISRHKQRVRLAAGLDEQKNLDEESIQRGLECLAMF 70
Query: 71 KKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYS 130
+ + F+ V+ AT +R+A+NA F++R + +E+I +E R YL VA++
Sbjct: 71 AERLQGFEPRNVRIAATHTLRQARNANLFIQRALDVLPFPIEIIPGSEEARLIYLGVAHT 130
Query: 131 LKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFE 190
+ VVD GGGSTE + GKG++ + S +G VN TE +F + + +
Sbjct: 131 QPQADSMLVVDIGGGSTEMIIGKGFEAELLNSKQMGCVNFTERYFANGKLSRKNFAQAIV 190
Query: 191 FLEKELSKVKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVLTYGQIKKWFDTFKE 250
E++L + + G ++T+ ++ K + E
Sbjct: 191 ASEQKLESIASKYRKKGWQMAFGSSGTIKAIHEVLIGQGHEDG-LITFERLSKLIEKLCE 249
Query: 251 IPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREGVL 302
S + + + D R V AG+ I + SD LREG+L
Sbjct: 250 WDSID-DLQLPGLTDDRKPVFAAGVAILSAIFHGLNIKEMHFSDGALREGLL 300
gi|3249102 (AC003114) Similar to exopolyphosphatase gb|1653871 from
Synechocystis sp. gb|D90917.. [Arabidopsis thaliana]
Length = 568
Score = 102 bits (253), Expect = 3e-21
Identities = 67/168 (39%), Positives = 101/168 (59%), Gaps = 5/168 (2%)
Query: 13 SIDIGSYSVRLTIAQIK-DGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYK 71
SID+G+ S +L I Q + G+ + +ER + + ++ T + + +Q L+++K
Sbjct: 17 SIDLGTNSFKLLIVQAEPSGRSFVPIERLKEPVVLSRESPTSISSQSQAR-ALQSLRKFK 75
Query: 72 KLIDEFKV--ERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAY 129
LI V +R++ VATEA+RRA+N EEF++ V +VGL V+V++ E+E R YL V
Sbjct: 76 SLILSHHVSGDRIRCVATEALRRAENQEEFVDAVFEDVGLKVDVLSGEEEARLVYLGVLQ 135
Query: 130 SLKP-EGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFK 176
L E V VD GGGSTE+V GK V+ +SL +G VNLT+ F K
Sbjct: 136 FLPVFEKSVLCVDIGGGSTEFVVGKCGDVKLAVSLKLGHVNLTQMFMK 183
emb|CAB42674.1| (AL049819) putative DNA-binding protein [Streptomyces coelicolor]
Length = 309
Score = 100 bits (246), Expect = 2e-20
Identities = 75/302 (24%), Positives = 136/302 (44%), Gaps = 8/302 (2%)
Query: 9 MRVASIDIGSYSVRLTIAQIKDGKLSIILERGRIT-SLGTKVKETGRLQEDRIEETIQVL 67
MR+ +D+GS +V L + G + ++ L + E G + D +++ V+
Sbjct: 1 MRLGVLDVGSNTVHLLVVDAHPGARPLPAHSHKVELRLAQLLDEDGAIGPDGVDQLAAVV 60
Query: 68 KEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAV 127
+E + ++ VE + AT A+R A NA++ L RV+ E G+ + V+T +E R +LA
Sbjct: 61 REALQAAEDKGVEDLLPFATSAVREASNADDVLARVRAETGVELTVLTGAEEARLTFLAA 120
Query: 128 -AYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVK 186
+ G + V+D GGGS E +G + +SLP+G LT DPP ++V+
Sbjct: 121 RRWFGWSAGRLLVLDIGGGSLEIAYGMDEEPDAAVSLPLGAGRLTAARLPDDPPHPDDVR 180
Query: 187 RFFEFLEKELSK-VKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQKVHG----KVLTYGQI 241
+ E+++ V + + + G + L +
Sbjct: 181 ALRRHVRTEIARTVGEFSRLGAPDHVVATSKTFRQLARITGAARSAEGLYVQRELKRASL 240
Query: 242 KKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREGV 301
+ W + S ER++ V + RA +LAG + +++F + L + W LREGV
Sbjct: 241 EAWVPRLAAMTSTERAE-LPGVSEGRAHQLLAGALVAEGAMDLFRVESLEICPWALREGV 299
Query: 302 LV 303
++
Sbjct: 300 IL 301
gb|AAD29107.1|AF053463_1 (AF053463) exopolyphosphatase; PPX [Pseudomonas aeruginosa]
Length = 506
Score = 99.8 bits (245), Expect = 2e-20
Identities = 78/315 (24%), Positives = 133/315 (41%), Gaps = 28/315 (8%)
Query: 11 VASIDIGSYSVRLTIAQIK-DGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKE 69
+A++D+GS S L +A+ G++ I+ G L + E L E+ + + L+
Sbjct: 17 IAALDLGSNSFHLCLAKANIHGEVRILERLGEKVQLAAGLDEERNLSEEATQRGLDCLRR 76
Query: 70 YKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAY 129
+ + I V+ VAT A+R A+N +F+ R + +G VEVI+ +E R YL VA
Sbjct: 77 FAQFISGMPQGSVRVVATNALREARNRSDFIRRAEEVLGHPVEVISGREEARLIYLGVAN 136
Query: 130 SLKPE-GEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRF 188
S+ G V D GGGSTE++ G+G++ SL +G V+ T+ +F+ T +
Sbjct: 137 SMPDSGGRRLVSDIGGGSTEFIIGQGFESELRESLQMGCVSYTQRYFRDGKITPARYAQA 196
Query: 189 FEFLEKELSKVKKPV------------DXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVL 236
+ EL ++ + + P + KVL
Sbjct: 197 YTAARLELMGIENSLRRLGWQQAVGASGTIRAVALAIKAGGHGNGEISPDGLAWLKRKVL 256
Query: 237 TYGQIKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWG 296
G ++K ++ R + AG+ I + E + ++ S+
Sbjct: 257 KLGDVEK--------------LDLEGIKPDRRTIFPAGLAILEAIFDALELEQMVHSEGA 302
Query: 297 LREGVLVSEVLKENH 311
LREGVL V + H
Sbjct: 303 LREGVLYDLVGRHQH 317
dbj|BAA74460.1| (AB022715) exopolyphosphatase [Pseudomonas aeruginosa]
Length = 506
Score = 99.8 bits (245), Expect = 2e-20
Identities = 78/315 (24%), Positives = 133/315 (41%), Gaps = 28/315 (8%)
Query: 11 VASIDIGSYSVRLTIAQIK-DGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKE 69
+A++D+GS S L +A+ G++ I+ G L + E L E+ + + L+
Sbjct: 17 IAALDLGSNSFHLCLAKANIHGEVRILERLGEKVQLAAGLDEERNLSEEATQRGLDCLRR 76
Query: 70 YKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAY 129
+ + I V+ VAT A+R A+N +F+ R + +G VEVI+ +E R YL VA
Sbjct: 77 FAQFISGMPQGSVRVVATNALREARNRSDFIRRAEEVLGHPVEVISGREEARLIYLGVAN 136
Query: 130 SLKPE-GEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRF 188
S+ G V D GGGSTE++ G+G++ SL +G V+ T+ +F+ T +
Sbjct: 137 SMPDSGGRRLVSDIGGGSTEFIIGQGFESELRESLQMGCVSYTQRYFRDGKITPARYAQA 196
Query: 189 FEFLEKELSKVKKPV------------DXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVL 236
+ EL ++ + + P + KVL
Sbjct: 197 YTAARLELMGIENSLRRLGWQQAVGASGTIRAVALAIKAGGHGNGEISPDGLAWLKRKVL 256
Query: 237 TYGQIKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWG 296
G ++K ++ R + AG+ I + E + ++ S+
Sbjct: 257 KLGDVEK--------------LDLEGIKPDRRTIFPAGLAILEAIFDALELEQMVHSEGA 302
Query: 297 LREGVLVSEVLKENH 311
LREGVL V + H
Sbjct: 303 LREGVLYDLVGRHQH 317
emb|CAA18923.1| (AL023514) hypothetical protein MLCB4.02 [Mycobacterium leprae]
Length = 317
Score = 98.3 bits (241), Expect = 7e-20
Identities = 71/185 (38%), Positives = 88/185 (47%), Gaps = 9/185 (4%)
Query: 10 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKE 69
RVA+ID G+ S+RL IA + KL + RI LG V TG D I T L +
Sbjct: 3 RVAAIDCGTNSIRLLIADVAGRKLRDVHREMRIVRLGQGVDATGEFALDAIARTRAALVD 62
Query: 70 YKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVV-----EVITPEQEGRYAY 124
Y L+ +VERV+ VAT A R N + +G V+ EVIT +E ++
Sbjct: 63 YTALLSAHRVERVRMVATSAARDVVNRDVLFAMTADVLGTVIPGSVAEVITGAEEADLSF 122
Query: 125 LAVAYSLKPEG-EVCVVDQGGGSTEYVFGKGYKVREVI---SLPIGIVNLTETFFKQDPP 180
L G V+D GGGSTE V G G V+ S IG V LTE DPP
Sbjct: 123 DGAVGELDSAGAPFVVIDLGGGSTEIVLGGGSAECGVVASYSADIGCVRLTERCLHSDPP 182
Query: 181 TEEEV 185
T EEV
Sbjct: 183 TPEEV 187
gi|3550418 (AF085682) exopolyphosphatase [Salmonella typhimurium]
Length = 513
Score = 94.8 bits (232), Expect = 8e-19
Identities = 51/176 (28%), Positives = 94/176 (52%)
Query: 12 ASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYK 71
A++D+GS S + IA++ DG + II + L + +L E+ +E + L +
Sbjct: 14 AAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGADNKLSEEAMERGLSCLSLFA 73
Query: 72 KLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSL 131
+ + F V V T +R+A+NA +FL+R ++ + +E+I+ +E R ++ V ++
Sbjct: 74 ERLQGFSPSSVCIVGTHTLRQAQNAADFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQ 133
Query: 132 KPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKR 187
+G V+D GGGSTE V G+ ++ R V S +G V+ + +F +E +R
Sbjct: 134 PEKGRKLVIDIGGGSTELVIGENFEPRLVESRRMGCVSFAQLYFPGGVINKENFQR 189
emb|CAB06853| (Z92539) hypothetical protein Rv1026 [Mycobacterium tuberculosis]
Length = 319
Score = 94.0 bits (230), Expect = 1e-18
Identities = 71/206 (34%), Positives = 96/206 (46%), Gaps = 11/206 (5%)
Query: 8 IMRVASIDIGSYSVRLTIAQI----KDGKLSIILERGRITSLGTKVKETGRLQEDRIEET 63
+ RVA+ID G+ S+RL IA + G+L + RI LG V TGR + I T
Sbjct: 3 LTRVAAIDCGTNSIRLLIADVGAGLARGELHDVHRETRIVRLGQGVDATGRFAPEAIART 62
Query: 64 IQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVV-----EVITPEQ 118
L +Y +L+ ERV+ VAT A R N + F +G + EVIT +
Sbjct: 63 RTALTDYAELLTFHHAERVRMVATSAARDVVNRDVFFAMTADVLGAALPGSAAEVITGAE 122
Query: 119 EGRYAYLAVAYSLKPEG-EVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQ 177
E ++ L G VVD GGGSTE V G+ ++V S IG V LTE
Sbjct: 123 EAELSFRGAVGELGSAGAPFVVVDLGGGSTEIVLGE-HEVVASYSADIGCVRLTERCLHS 181
Query: 178 DPPTEEEVKRFFEFLEKELSKVKKPV 203
DPPT +EV + + L + V
Sbjct: 182 DPPTLQEVSTARRLVRERLEPALRTV 207
gi|3820537 (AF080002) exopolyphosphatase Ppx [Heliobacillus mobilis]
Length = 311
Score = 93.2 bits (228), Expect = 2e-18
Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 28/311 (9%)
Query: 13 SIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKK 72
+ID GS SVR A+ + GK + + T LG +V +G L D +E T+ L +
Sbjct: 9 AIDFGSNSVRFLAARQESGKQTPLWHHLDTTRLGREVTRSGTLHPDAVERTMAALGHGVE 68
Query: 73 LIDEF--KVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYS 130
+ ++ V++V A AT A+R A N ++F RV L V +++ E EG +Y
Sbjct: 69 SMQKYGISVQQVAAFATSAVREALNGQDFCRRVYERFRLEVALLSGETEGHLSYQGAVEG 128
Query: 131 LKPEGEVC-----VVDQGGGSTEYVF-GKGYKVREVISLPIGIVNLTET------FFKQD 178
L PEG VVD GGGS E VF K R+ S P+G V LTE+
Sbjct: 129 L-PEGLAAGRIPVVVDIGGGSAEVVFHHKDRWWRQ--SFPLGAVRLTESPLGRVDIASVW 185
Query: 179 PPTEEEVKRFFEFLEKELSKVKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVLTY 238
P E+V L ++ +P+ + Y P KVHG +
Sbjct: 186 APAVEKV--------SSLQRMGRPI--LIGVGGTITTVAAIALQLRDYAPDKVHGYEIPL 235
Query: 239 GQIKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLR 298
++K + + EER K+ ++ RA +I AG+ + +E + ++VS+ L
Sbjct: 236 EKVKSIARELRAMDLEER-KQVAGLQPERADIIPAGLSVLEAFMEDGGFEEIVVSETDLL 294
Query: 299 EGVLVSEVLKE 309
L L E
Sbjct: 295 HAALKQIALGE 305
gi|146252 (M83316) pppGpp phosphohydrolase [Escherichia coli]
Length = 442
Score = 87.0 bits (212), Expect = 2e-16
Identities = 55/192 (28%), Positives = 93/192 (47%), Gaps = 4/192 (2%)
Query: 12 ASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYK 71
A+ID+GS S + + + G + + R L + L + +E Q L+ +
Sbjct: 9 AAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAAGLNSENALSNEAMERGWQCLRLFA 68
Query: 72 KLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSL 131
+ + + +++ VAT +R A NA +F+ + + +G V+VI+ E+E R Y VA++
Sbjct: 69 ERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQEILGCPVQVISGEEEARLIYQGVAHTT 128
Query: 132 KPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEF 191
+ VVD GG STE V G G + + SL +G V E +F +E F+
Sbjct: 129 GGADQRLVVDIGGASTELVTGTGAQTTSLFSLSMGCVTWLERYFADRNLGQEN----FDA 184
Query: 192 LEKELSKVKKPV 203
EK +V +PV
Sbjct: 185 AEKAAREVLRPV 196
sp|P29014|PPX_ECOLI EXOPOLYPHOSPHATASE (METAPHOSPHATASE) >gi|321854|pir||A45333
exopolyphosphatase PPX - Escherichia coli >gi|147343
(L06129) exopolyphosphatase [Escherichia coli]
>gi|1788848 (AE000336) exopolyphosphatase [Escherichia
coli] >gi|1805562|dbj|BAA16390| (D90878)
exopolyphosphatase PPX [Escherichia coli]
Length = 513
Score = 86.6 bits (211), Expect = 2e-16
Identities = 49/176 (27%), Positives = 90/176 (50%)
Query: 12 ASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYK 71
A++D+GS S + IA++ DG + II + L + L E+ + + L +
Sbjct: 14 AAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFA 73
Query: 72 KLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSL 131
+ + F V V T +R+A NA +FL+R ++ + +E+I+ +E R ++ V ++
Sbjct: 74 ERLQGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQ 133
Query: 132 KPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKR 187
+G V+D GGGSTE V G+ ++ V S +G V+ + +F +E +R
Sbjct: 134 PEKGRKLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGGVINKENFQR 189
sp|P25552|GPPA_ECOLI GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE (GUANOSINE
PENTAPHOSPHATE PHOSPHOHYDROLASE)
(PPPGPP-5'-PHOSPHOHYDROLASE) >gi|477160|pir||A48285
exopolyphosphatase (EC 3.6.1.11) - Escherichia coli
>gi|415416|bbs|136510 exopolyphosphatase, guanosine
pentaphosphate phosphohydrolase, GPP, exopoly(P)ase {EC
3.6.1.11} [Escherichia coli, Peptide, 494 aa] >gi|148183
(M87049) guanosine pentaphosphatase [Escherichia coli]
>gi|1790213 (AE000454) guanosine pentaphosphatase;
exopolyphosphatase [Escherichia coli]
Length = 494
Score = 86.6 bits (211), Expect = 2e-16
Identities = 55/192 (28%), Positives = 93/192 (47%), Gaps = 4/192 (2%)
Query: 12 ASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYK 71
A+ID+GS S + + + G + + R L + L + +E Q L+ +
Sbjct: 9 AAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAAGLNSENALSNEAMERGWQCLRLFA 68
Query: 72 KLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSL 131
+ + + +++ VAT +R A NA +F+ + + +G V+VI+ E+E R Y VA++
Sbjct: 69 ERLQDIPPSQIRVVATARLRLAVNAGDFIAKAQEILGCPVQVISGEEEARLIYQGVAHTT 128
Query: 132 KPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEF 191
+ VVD GG STE V G G + + SL +G V E +F +E F+
Sbjct: 129 GGADQRLVVDIGGASTELVTGTGAQTTSLFSLSMGCVTWLERYFADRNLGQEN----FDA 184
Query: 192 LEKELSKVKKPV 203
EK +V +PV
Sbjct: 185 AEKAAREVLRPV 196
gb|AAF12188.1|AE001862_14 (AE001862) exopolyphosphatase [Deinococcus radiodurans]
Length = 515
Score = 85.4 bits (208), Expect = 5e-16
Identities = 80/313 (25%), Positives = 131/313 (41%), Gaps = 18/313 (5%)
Query: 9 MRVASIDIGSYSVRLTIAQIKDGKLS---IILERGRITSLGTKVKETGRLQEDRIEETIQ 65
MRVA D+G+ S L IA+ G +I T LG + G L + E
Sbjct: 1 MRVAVADVGTNSSHLLIAEALPGDAGGFRVIDTLKDRTRLGECLDTRGELTPEGEERLAS 60
Query: 66 VLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYL 125
L +++L V+ AT A+R A N E ERV++ GL VI+ +EG YL
Sbjct: 61 ALTRFRELAASAGAGDVRVYATSALREAPNGAEVAERVRQRTGLYPAVISGVREGELTYL 120
Query: 126 AVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQD------P 179
V +++ + ++D GGGS E+V G + +V+SLP+G + +T F + D
Sbjct: 121 GVREAVELGPDNVLLDLGGGSLEFVRGAEERAADVLSLPLGAIRMTRAFPEGDGKNAGRD 180
Query: 180 PTEEEVKRFFEFLEKELSK-VKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQK----VHGK 234
+ ++ E L + +P P + V+G+
Sbjct: 181 VADAVARQVRELLRPHAGRFAARPGTQFFLSSGTAEAAADAIAQRRGGRPAEAAGGVNGE 240
Query: 235 VLTYGQIKKWFDTFKEIPSEERSKRFRQVE-DRRAKVILAGIGIFLKTLEIFEKDCLIVS 293
T ++ D + ++R R +RR ILA + + L+ + VS
Sbjct: 241 RFTLTELA---DLLAHVARLRPAQRARVPGLERRGDTILAALSVLHAALDALGAREVTVS 297
Query: 294 DWGLREGVLVSEV 306
+ LREG+L+ E+
Sbjct: 298 EGALREGMLIEEL 310
sp|P54882|Y496_MYCLE HYPOTHETICAL 43.4 KD PROTEIN B2168_C2_208 >gi|2145840|pir||S72894
exopolyphosphatase (EC 3.6.1.11) ppx - Mycobacterium
leprae >gi|467046 (U00018) ppx; B2168_C2_208
[Mycobacterium leprae]
Length = 406
Score = 85.0 bits (207), Expect = 7e-16
Identities = 67/308 (21%), Positives = 131/308 (41%), Gaps = 8/308 (2%)
Query: 9 MRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKET-GRLQEDRIEETIQVL 67
+R+ +D+GS +V L + G + + T + ++ G++ + ++ + +
Sbjct: 68 VRLGVLDVGSNTVHLLVVDAYRGGHPTPMSSTKATLRMVEATDSSGKITKRAADKLVSTI 127
Query: 68 KEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAV 127
E+ K+ + A AT A+R A N+++ L RV++E G+ ++V+ E R +LAV
Sbjct: 128 GEFAKIAVSSGCAELMAFATSAVREAGNSDDVLSRVRKETGVRLQVLRGVDESRLTFLAV 187
Query: 128 -AYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVK 186
+ G + +D GGGS E G + +SLP+G LT + DPP V
Sbjct: 188 RRWFGWSAGRIINLDIGGGSLELSNGVDEEPEVALSLPLGAGRLTREWLPDDPPGRRRVA 247
Query: 187 RFFEFLEKELSKVKKPV-----DXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVLTYGQI 241
++L+ ELS V P + LT +
Sbjct: 248 MLRDWLDSELSDASVTVLEAGKPDLAVATSKTFRSLARLTGAAPSAAGPRAKRALTVNGL 307
Query: 242 KKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREGV 301
++ + + +R++ + RA I+AG + ++ + + + W LREG+
Sbjct: 308 RQLIAFISRMTASDRAE-LEGISTERAPQIVAGALVAEASMRALSIETVDICPWALREGL 366
Query: 302 LVSEVLKE 309
++ ++ E
Sbjct: 367 ILRKLDSE 374
sp|P44828|PPX_HAEIN PUTATIVE EXOPOLYPHOSPHATASE (METAPHOSPHATASE)
>gi|1074070|pir||C64087 exopolyphosphatase (ppx) homolog
- Haemophilus influenzae (strain Rd KW20) >gi|1573698
(U32752) exopolyphosphatase, putative [Haemophilus
influenzae Rd]
Length = 323
Score = 84.7 bits (206), Expect = 9e-16
Identities = 47/180 (26%), Positives = 86/180 (47%)
Query: 8 IMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVL 67
+ +A+ID+GS S + +A+I +G + ++ + L + E L ++ I + L
Sbjct: 14 VREIAAIDLGSNSFHMIVARIVNGSIQVLSRLKQKVKLAEGLDENAVLNQEAITRGVNCL 73
Query: 68 KEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAV 127
+ + + F +E V V T +RRA N +EFL + + + +I+ + E + Y V
Sbjct: 74 ALFAERLQGFPMENVNVVGTYTLRRAVNNDEFLRQAAKVFPYPINIISGQTEAKTIYAGV 133
Query: 128 AYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKR 187
++ +G V+D GGGSTE + G + S +G V+ FF + E +R
Sbjct: 134 CHTQPEKGRKLVIDIGGGSTEMIIGDDFTPLMAESRHMGCVSFATQFFTDGIISPENFQR 193
dbj|BAA16392| (D90880) exopolyphosphatase PPX [Escherichia coli]
Length = 497
Score = 83.5 bits (203), Expect = 2e-15
Identities = 48/173 (27%), Positives = 87/173 (49%)
Query: 15 DIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLI 74
D+GS S + IA++ DG + II + L + L E+ + + L + + +
Sbjct: 1 DLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERL 60
Query: 75 DEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPE 134
F V V T +R+A NA +FL+R ++ + +E+I+ +E R ++ V ++ +
Sbjct: 61 QGFSPASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEK 120
Query: 135 GEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKR 187
G V+D GGGSTE V G+ ++ V S +G V+ + +F +E +R
Sbjct: 121 GRKLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGGVINKENFQR 173
emb|CAB61547.1| (AL133171) putative phosphatase [Streptomyces coelicolor A3(2)]
Length = 336
Score = 79.6 bits (193), Expect = 3e-14
Identities = 71/306 (23%), Positives = 127/306 (41%), Gaps = 10/306 (3%)
Query: 9 MRVASIDIGSYSVRLTIAQIKDG-KLSIILERGRITSLGTKVKETGRLQEDRIEETIQVL 67
MR + +D+GS +VRL +A + G L + + R+ L +V+ + E+ +E + +
Sbjct: 1 MRTSVVDVGSNTVRLMVADAEGGVPLPVHTAKWRLR-LSEQVRPGDPVPEEAVERLVGAV 59
Query: 68 KEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAV 127
+ + D + A AT +R A N E L V+ G+ + + E E +LA
Sbjct: 60 ADASRTADRWGASGPLAFATAVVRAAPNRREVLRTVQARTGVPLCTLPGEVEAELTFLAA 119
Query: 128 AYSLK-PEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFK--QDPPTEEE 184
+ G + ++D GGGS E FG+G V SLP+G LT F +DP + E+
Sbjct: 120 RRWMGWRSGPLALLDIGGGSLEVAFGRGRLPGFVASLPLGAARLTHEFLAGGRDPASPEQ 179
Query: 185 VKRFFEFLEKELSKVKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQKVHG----KVLTYGQ 240
VK + +L + + P +G + +
Sbjct: 180 VKALRRRVRHQLRDAAARIRWEGPRTAVATSRTFQQLGRLCGAPPGRYGPFTERRMRCSD 239
Query: 241 IKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREG 300
+ + + ER+ R + RA LAG + +++ + + + W +REG
Sbjct: 240 LGDAVGRLAALSAAERA-RLPGISAPRAAQSLAGAVVGHTAMKLTGLEAVALCPWAIREG 298
Query: 301 VLVSEV 306
VL+ +
Sbjct: 299 VLLRHI 304
sp|Q11161|Y496_MYCTU HYPOTHETICAL 34.9 KD PROTEIN RV0496 >gi|1449294|emb|CAB00922|
(Z77162) hypothetical protein Rv0496 [Mycobacterium
tuberculosis]
Length = 328
Score = 79.6 bits (193), Expect = 3e-14
Identities = 62/271 (22%), Positives = 116/271 (41%), Gaps = 7/271 (2%)
Query: 45 LGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVK 104
L +G++ + ++ I + E+ K+ + A AT A+R A+N+E+ L RV+
Sbjct: 22 LAEATDSSGKITKRGADKLISTIDEFAKIAISSGCAELMAFATSAVRDAENSEDVLSRVR 81
Query: 105 REVGLVVEVITPEQEGRYAYLAV-AYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISL 163
+E G+ ++ + E E R +LAV + G + +D GGGS E G + +SL
Sbjct: 82 KETGVELQALRGEDESRLTFLAVRRWYGWSAGRILNLDIGGGSLEVSSGVDEEPEIALSL 141
Query: 164 PIGIVNLTETFFKQDPPTEEEVKRFFEFLEKELSKVKKPV-----DXXXXXXXXXXXXXX 218
P+G LT + DPP V ++L+ EL++ V
Sbjct: 142 PLGAGRLTREWLPDDPPGRRRVAMLRDWLDAELAEPSVTVLEAGSPDLAVATSKTFRSLA 201
Query: 219 XEYNVYPYDPQKVHGKVLTYGQIKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIF 278
P + LT +++ + + +R++ V RA I+AG +
Sbjct: 202 RLTGAAPSMAGPRVKRTLTANGLRQLIAFISRMTAVDRAE-LEGVSADRAPQIVAGALVA 260
Query: 279 LKTLEIFEKDCLIVSDWGLREGVLVSEVLKE 309
++ + + + W LREG+++ ++ E
Sbjct: 261 EASMRALSIEAVEICPWALREGLILRKLDSE 291
ref|NP_011262.1|RTG2| involved in interorganelle communication between mitochondria,
peroxisomes, and nucleus; Rtg2p
>gi|1710803|sp|P32608|RTG2_YEAST RETROGRADE REGULATION
PROTEIN 2 >gi|2133111|pir||S61609 RTG2 protein - yeast
(Saccharomyces cerevisiae) >gi|1150587|emb|CAA64135|
(X94357) ORF NRF588; EMBL:SCRTG2X;M97691;
PIR:B44344;B44344 [Saccharomyces cerevisiae] >gi|1262162
(M97691) Rtg2p [Saccharomyces cerevisiae]
>gi|1322929|emb|CAA96972| (Z72774) ORF YGL252c
[Saccharomyces cerevisiae]
Length = 588
Score = 65.6 bits (157), Expect = 5e-10
Identities = 80/332 (24%), Positives = 132/332 (39%), Gaps = 43/332 (12%)
Query: 14 IDIGSYSVRLTIAQ--IKDGKLSIILERGRI------TSLGTKVKETGRLQEDRIEETIQ 65
+DIGS +R +I+ ++ + + R+ T + D I+E
Sbjct: 22 VDIGSNGIRFSISSKAAHHARIMPCVFKDRVGLSLYEVQYNTHTNAKCPIPRDIIKEVCS 81
Query: 66 VLKEYKKLIDEFKVER--VKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYA 123
+K +K + D+F V V+ +ATEA R A NA+EF+ V G VE++ E E R
Sbjct: 82 AMKRFKLICDDFGVPETSVRVIATEATRDAINADEFVNAVYGSTGWKVEILGQEDETRVG 141
Query: 124 YLAVAYSLKPEGEVCVVDQGGGSTEYVF-----GKGYKVREVISLPIGIVNLTETFFKQD 178
V S + +D GGST+ + G+ + + +SLP G L
Sbjct: 142 IYGVVSSFNTVRGL-YLDVAGGSTQLSWVISSHGEVKQSSKPVSLPYGAGTLLRRM---- 196
Query: 179 PPTEEEVKRFFEFLEKELSKVKK---------------PVDXXXXXXXXXXXXXXXEYNV 223
T++ F+E E ++K D Y
Sbjct: 197 -RTDDNRALFYEIKEAYKDAIEKIGIPQEMIDDAKKEGGFDLWTRGGGLRGMGHLLLYQS 255
Query: 224 YPYDPQK-VHGKVLTYGQIKKWFDTF---KEIPSEERSKRFRQVEDRRAKVILAGIGIFL 279
Y Q ++G TY + D ++IP + + +V DRRA + L +G+F+
Sbjct: 256 EGYPIQTIINGYACTYEEFSSMSDYLFLKQKIPGSSKEHKIFKVSDRRA-LQLPAVGLFM 314
Query: 280 KTL--EIFEKDCLIVSDWGLREGVLVSEVLKE 309
+ I + + S+ G+REG L S + KE
Sbjct: 315 SAVFEAIPQIKAVHFSEGGVREGSLYSLLPKE 346
emb|CAA14755| (AJ235271) GUANOSINE PENTAPHOSPHATE PHOSPHOHYDROLASE (gppA)
[Rickettsia prowazekii]
Length = 470
Score = 60.9 bits (145), Expect = 1e-08
Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 29/298 (9%)
Query: 9 MRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLK 68
MR A IDIGS ++R + + + L I + + T L D ++ Q
Sbjct: 1 MRSAIIDIGSNALRAVVYESDE------LGAPEIFNYKFRNYLTNLLNLDNLDVKHQTYL 54
Query: 69 EYKKLIDEF---KVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYL 125
+ LI F V ++ VAT +R A+EF +K+ + +E+I+ E+E AYL
Sbjct: 55 SIQYLIHVFTKLSVTNIRCVATAILRGHPKADEFKTIIKKRFNIDIEIISGERE---AYL 111
Query: 126 AVAYSLKPEGEV--CVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEE 183
A + + V D GGGS E KV ++ SLP+G + + F
Sbjct: 112 TAAGLISGISDAFGIVADLGGGSLELAHIYNKKVGKLKSLPLGTKIIANSNF-------S 164
Query: 184 EVKRFFEFLEKELSKVKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVLTYGQIKK 243
+V + LE+E P E YP + +H + + +
Sbjct: 165 DVGLITKMLEEEFGVAHYPNLYLIGGALRLMSRIYMESINYPL--KNLHNFEINRVEFEL 222
Query: 244 WFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREGV 301
+ + +I + S ++ + A +++ + +++F + +I+S++GL+EGV
Sbjct: 223 YLEKLSQIDKLKLSYYEQKAINYNAVLVIKAM------IKVFSPEKIIISNYGLKEGV 274
gb|AAD35287.1|AE001704_8 (AE001704) guanosine pentaphosphate phosphohydrolase, putative
[Thermotoga maritima]
Length = 288
Score = 58.2 bits (138), Expect = 9e-08
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 112 EVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLT 171
E++ E+E Y+Y++VA + ++ V D GGGS E + GY +SL +G L
Sbjct: 83 EILPEEKEAYYSYISVAKDFGKK-DILVADLGGGSLELAWKDGY-----VSLELGTHVLN 136
Query: 172 ETFFKQDPPTEEEVKRFFEFLEKELSKVKKPVDXXXXXXXXXXXXXXXEYNVYPYDPQKV 231
T F P E V E++ K L +VKK +D + +
Sbjct: 137 RT-FSLTLPYIEPVDGIVEYVMKRLPEVKK----DELFGVGGSFVALAALMKGKWDLEIL 191
Query: 232 HGKVLTYGQIKKWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLI 291
HG VL +++K D K + S E K + + + R K ILAG GI L +
Sbjct: 192 HGSVLKLEEVEKLVDKIKRM-SFEDVKNLKVLPEGREKTILAG-GIVTIALLRKYSPRMT 249
Query: 292 VSDWGLREGVLVSEVLKE 309
VS G R G+ V E+L++
Sbjct: 250 VSTRGYRYGI-VWEILEK 266
gb|AAD29114.1|AF087931_3 (AF087931) exopolyphosphatase [Pseudomonas aeruginosa]
Length = 369
Score = 42.6 bits (98), Expect = 0.004
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 26/189 (13%)
Query: 135 GEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEFLEK 194
G V D GGGSTE++ G+G++ SL +G V+ T+ +F+ T + +
Sbjct: 6 GRRLVSDIGGGSTEFIIGQGFESELRESLQMGCVSYTQRYFRDGKITPARYAQAYTAARL 65
Query: 195 ELSKVKKPV------------DXXXXXXXXXXXXXXXEYNVYPYDPQKVHGKVLTYGQIK 242
EL ++ + + P + KVL G ++
Sbjct: 66 ELMGIENSLRRLGWQQAVGASGTIRAVALAIKAGGHGNGEISPDGLAWLKRKVLKLGDVE 125
Query: 243 KWFDTFKEIPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEIFEKDCLIVSDWGLREGVL 302
K ++ R + AG+ I + E + ++ S+ LREGVL
Sbjct: 126 K--------------LDLEGIKPDRRTIFPAGLAILEAIFDALELEQMVHSEGALREGVL 171
Query: 303 VSEVLKENH 311
V + H
Sbjct: 172 YDLVGRHQH 180
gi|2707899 (AF038380) FtsA [Pseudomonas putida]
Length = 420
Score = 38.3 bits (87), Expect = 0.084
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 93 AKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGE----VCVVDQGGGSTE 148
A NA + +E+ R GL ++ I EQ LA AYS+ + E VC+VD GGG+T+
Sbjct: 164 AVNAAQNIEKCVRRCGLEIDDIILEQ------LASAYSVLTDDEKELGVCLVDIGGGTTD 217
Query: 149 YVFGKGYKVREVISLPI 165
+R +PI
Sbjct: 218 IAIFTEGAIRHTAVIPI 234
emb|CAA69473| (Y08256) orf c06028 [Sulfolobus solfataricus]
Length = 360
Score = 36.4 bits (82), Expect = 0.32
Identities = 36/158 (22%), Positives = 72/158 (44%), Gaps = 12/158 (7%)
Query: 54 RLQEDRIEETIQVLKEYKKL-IDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVE 112
R+ ED + + ++ E++K+ + + ++ + + ++ +KN E + E G++ E
Sbjct: 156 RIAEDTGKNVVIMIDEFQKIRVLKQPFPKILELTRKRLQESKNVEIIVSG--SETGIIEE 213
Query: 113 VITPEQEGRYAYLAV--AYSLKPEGEVCVVDQG-GGSTEYVFGKGYKVREVISLPIGIVN 169
+IT +E Y Y + S E + +++G G + + K Y++ E I + +
Sbjct: 214 MITEAKEPFYNYFKIERLKSFDKETSIRFLNEGLKGKCKEYYEKVYELTEGIPAWLNLAG 273
Query: 170 L------TETFFKQDPPTEEEVKRFFEFLEKELSKVKK 201
L +DP E E+K+ E L K KV K
Sbjct: 274 LIFERECNIEAILEDPNVEIELKKDLEGLTKNEIKVLK 311
ref|NP_012117.1|YIL149C| Yil149cp >gi|731882|sp|P40457|YIO9_YEAST HYPOTHETICAL 195.1 KD
PROTEIN IN DNA43-UBI1 INTERGENIC REGION
>gi|626310|pir||S48385 hypothetical protein YIL149c -
yeast (Saccharomyces cerevisiae) >gi|557774|emb|CAA86129|
(Z38059) orf, len: 1679, CAI: 0.16, similar to MLP1_YEAST
Q02455 MYOSIN-LIKE PROTEIN [Saccharomyces cerevisiae]
Length = 1679
Score = 36.4 bits (82), Expect = 0.32
Identities = 20/71 (28%), Positives = 37/71 (51%)
Query: 32 KLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIR 91
KL + +E+ + + + KE + ++ + ++ EY K I+ K E +K E +R
Sbjct: 1387 KLKVNMEKEKDRIIDERTKEFEKKLQETLNKSTSSEAEYSKDIETLKKEWLKEYEDETLR 1446
Query: 92 RAKNAEEFLER 102
R K AEE L++
Sbjct: 1447 RIKEAEENLKK 1457
gi|2650176 (AE001073) signal-transducing histidine kinase, putative
[Archaeoglobus fulgidus]
Length = 771
Score = 36.0 bits (81), Expect = 0.42
Identities = 36/131 (27%), Positives = 58/131 (43%), Gaps = 12/131 (9%)
Query: 61 EETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEG 120
E +Q +E +K + + RV + EA+ RA + EE L+ V R ++VE EG
Sbjct: 111 ERILQEEQERRKRAE--RALRVLSKVNEAVTRASDEEELLKEVCR---IIVE------EG 159
Query: 121 RYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREVISLPIG-IVNLTETFFKQDP 179
YAY V Y+ K + V G +V + E P+G + L +T ++
Sbjct: 160 GYAYAWVGYAEKDKTVKPVAASGNDDYAWVIKVTWNDSETGRGPVGSSIRLRKTVVVRET 219
Query: 180 PTEEEVKRFFE 190
+E K + E
Sbjct: 220 DADESFKPWRE 230
gb|AAF00610.1|AF156781_1 (AF156781) apyrase [Dolichos biflorus]
Length = 467
Score = 35.2 bits (79), Expect = 0.73
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 57 EDRIEETIQVLKEYKKLIDEFKVER--VKAVATEAIRRAKN--AEEFLERV-----KREV 107
E+ E + +L+E + +I + R VK AT +R+ + + L+ V KR
Sbjct: 106 EEAAESLVPLLEEAEAVIPQELHPRTPVKVGATAGLRQLEGDASNRILQAVSDMLKKRST 165
Query: 108 ----GLVVEVITPEQEGRYAYLAVAYSLKPEGE-----VCVVDQGGGSTEYVFGKGYK-V 157
G V V++ QEG Y ++ + Y L G+ V VVD GGGS + + +
Sbjct: 166 LKVEGDAVSVLSGNQEGAYQWVTINYLLGNLGKHYSKTVAVVDLGGGSVQMAYAISEEDA 225
Query: 158 REVISLPIGIVN-LTETFFK 176
+ +P G+ + +TE F +
Sbjct: 226 AKAPQVPDGVESYITEMFLR 245
dbj|BAA29355.1| (AP000001) 279aa long hypothetical protein [Pyrococcus horikoshii]
Length = 279
Score = 35.2 bits (79), Expect = 0.73
Identities = 28/88 (31%), Positives = 47/88 (52%), Gaps = 9/88 (10%)
Query: 21 VRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQ-VLKEYKKLIDEFKV 79
VR T IK GKL +++ ++ E G L+E +E + +LKEY+KL EF+
Sbjct: 99 VRETYDLIKQGKLDELIKT-------IEMIEKGGLKEVVAKEEYEKLLKEYEKLKKEFEE 151
Query: 80 ERVKAVATEAIRRAKNAEEFLERVKREV 107
+ K ATE + + A++ +E +K +
Sbjct: 152 VKAKLEATE-LENLEKAKKEIEELKERI 178
emb|CAA90755.1| (Z50872) weak similarity with chromosome segregation protein CUT14
(Swiss Prot accession number P41003); cDNA EST
EMBL:T01244 comes from this gene; cDNA EST EMBL:T01931
comes from this gene; cDNA EST yk244d9.3 comes from
this...
Length = 273
Score = 34.8 bits (78), Expect = 0.95
Identities = 22/83 (26%), Positives = 45/83 (53%), Gaps = 6/83 (7%)
Query: 1 MSLDNKPIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRI 60
M ++N+ I + A I+ ++ + + A+I+D K I E + KVK ++++
Sbjct: 69 MFMENQLIEKDAVIEKNNHVIAINGAKIEDNKKRIQEEMWK------KVKVLEDAFDEKV 122
Query: 61 EETIQVLKEYKKLIDEFKVERVK 83
EE +V+K K+ ID+ ++ R +
Sbjct: 123 EENNEVIKNQKESIDKMRISRTE 145
emb|CAB49181.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 281
Score = 34.4 bits (77), Expect = 1.2
Identities = 28/87 (32%), Positives = 41/87 (46%), Gaps = 14/87 (16%)
Query: 21 VRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVE 80
VR T IK GKL +++ + G + R EE ++LKEY+KL EF+
Sbjct: 93 VRETYELIKQGKLDELIKTIEMIEKGGIKEVVAR------EEYEKLLKEYEKLKQEFEEV 146
Query: 81 RVKAVATEAIRRAKNAEEFLERVKREV 107
+ K A E E LE+ K+E+
Sbjct: 147 KAKIEAAEL--------ESLEKAKKEI 165
dbj|BAA30025| (AP000004) 879aa long hypothetical purine NTPase [Pyrococcus
horikoshii]
Length = 879
Score = 34.4 bits (77), Expect = 1.2
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 26/181 (14%)
Query: 42 ITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKA-VATEAIRRAK-NAEEF 99
I L TK++E R + D I+ TI+ LKE +K + K+E K +A + I + +E+
Sbjct: 675 IKGLETKLEELER-RRDEIKSTIEKLKEERKERESAKMELEKLNIAIKRIEELRGKIKEY 733
Query: 100 LERVKREV-----GLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQG--------GGS 146
+K E + E+ + +G+Y+ +A+ + + ++ V+ G G
Sbjct: 734 KALIKEEALNKIGEIASEIFSEFTDGKYSGIAIR-AEDNKVKLFVIYDGVERPLTFLSGG 792
Query: 147 TEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPT----EEEVKRFFEFLEKELSKVKKP 202
G +++ + L IG V+L D PT EE ++ E +E+ L K+ +
Sbjct: 793 ERIALGLAFRLAMSMYL-IGKVDL----LILDEPTPFLDEERRRKLIEIMERHLRKISQV 847
Query: 203 V 203
+
Sbjct: 848 I 848
gi|2688743 (AE001179) polyribonucleotide nucleotidyltransferase (pnpA)
[Borrelia burgdorferi]
Length = 722
Score = 34.4 bits (77), Expect = 1.2
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 21/147 (14%)
Query: 14 IDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKL 73
+ I Y+ ++ QI K+S++ I S G VK D E +Q+ + K +
Sbjct: 546 VGISKYAPKIVQLQIDIDKISLV-----IGSTGKTVKAI----TDEFEVKVQIEQNGKII 596
Query: 74 I---DEFKVERVKAVATEAIRRAKNAEEFLERVKR--EVGLVVEVITPEQEGRYAYLAVA 128
+ D+FK+++ K +R K E + VK+ G +E +TP +EG ++
Sbjct: 597 LFGDDDFKMQKAKERIESIVREPKVGEIYEGTVKKINSFGAFIE-LTPAKEG-----FLS 650
Query: 129 YSLKPEGEVCVVDQGGGSTEYV-FGKG 154
LKP + G S Y FG G
Sbjct: 651 TRLKPRDSKYGSGRFGNSNRYSRFGGG 677
sp|O32861|FTSY_MYCHO CELL DIVISION PROTEIN FTSY HOMOLOG >gi|2292927|emb|CAA72412|
(Y11726) FtsY protein [Mycoplasma hominis]
Length = 351
Score = 33.6 bits (75), Expect = 2.1
Identities = 39/131 (29%), Positives = 58/131 (43%), Gaps = 26/131 (19%)
Query: 18 SYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEF 77
S SV T IKD +L++IL G V +G+ T + K KKLIDE
Sbjct: 130 SNSVVDTTLNIKDNRLNVILVVG--------VNGSGK--------TTSISKIAKKLIDEG 173
Query: 78 KVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQE----GRYAYLAVAYSLKP 133
K +V A + R A A E LE + VG +++TP + Y A+ +
Sbjct: 174 K--KVLIAAGDTFRAA--AVEQLEIWAKRVG--ADIVTPNENEVDPAAVVYRAIDIAKSK 227
Query: 134 EGEVCVVDQGG 144
+ ++ +VD G
Sbjct: 228 KYDILIVDTAG 238
sp|P30427|PLEC_RAT PLECTIN >gi|1561642|emb|CAA42169| (X59601) plectin [Rattus
norvegicus]
Length = 4687
Score = 33.6 bits (75), Expect = 2.1
Identities = 26/79 (32%), Positives = 38/79 (47%), Gaps = 2/79 (2%)
Query: 31 GKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVL--KEYKKLIDEFKVERVKAVATE 88
GK + LE GRI S + L E Q+ +E ++ E +V+R A E
Sbjct: 2080 GKAELELELGRIRSNAEDTMRSKELAEQEAARQRQLAAEEEQRRREAEERVQRSLAAEEE 2139
Query: 89 AIRRAKNAEEFLERVKREV 107
A R+ K A E +ER+K +V
Sbjct: 2140 AARQRKVALEEVERLKAKV 2158
gi|3560487 (AF023852) ElpB1 [Borrelia burgdorferi]
Length = 375
Score = 33.2 bits (74), Expect = 2.8
Identities = 24/105 (22%), Positives = 50/105 (46%), Gaps = 2/105 (1%)
Query: 2 SLDNKPIMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIE 61
S DN PI++ A G V++ ++ + K+ E+ T + K +E + +E++ +
Sbjct: 102 SQDNSPILKAAEQSGGQREVKVKKVEVSEAKVEGKEEKQENTEVRNK-QELAKQEEEQQK 160
Query: 62 ETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKRE 106
+ K+ ++ + E K + K A E R K E+ + ++E
Sbjct: 161 RKAEKEKQKREEVQERKAKAEKE-AKEKAERQKQEEQQKRKAEKE 204
dbj|BAA32513.1| (AB016975) outer surface protein A (OspA) [Borrelia turdi]
Length = 273
Score = 32.8 bits (73), Expect = 3.7
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 2 SLDNKPIMRVASIDI-GSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGR-----L 55
SLD K S+D+ G V ++ + KDGK S++ G++ GT K G +
Sbjct: 23 SLDEK---NSVSVDLPGEMKVLVSKEKDKDGKYSLMATIGKLELKGTSDKSNGSGMLEGV 79
Query: 56 QEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVIT 115
++D+ + + + + K E E K + + + +K+ +E+ + L ++IT
Sbjct: 80 KDDKSKVKLTISDDLSKTTLETFKEDGKTLVSRKV-NSKDKSSTVEKFNEKGELSEKIIT 138
Query: 116 PEQEGRYAYLAV 127
E R Y +
Sbjct: 139 RENGTRLEYTEI 150
gi|2983085 (AE000689) general secretion pathway protein G [Aquifex aeolicus]
Length = 133
Score = 32.5 bits (72), Expect = 4.8
Identities = 21/68 (30%), Positives = 35/68 (50%), Gaps = 11/68 (16%)
Query: 50 KETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRA-----------KNAEE 98
K TGR+ E RIE T LK K +++FK++ TE +A KN ++
Sbjct: 27 KLTGRVDEARIESTKLQLKAVKNALEQFKLDNGFYPTTEQGLKALVEKPTTPPEPKNWKQ 86
Query: 99 FLERVKRE 106
++E+V ++
Sbjct: 87 YMEKVPKD 94
gi|552083 (L28953) B-box binding factor-1 [Drosophila melanogaster]
Length = 638
Score = 32.5 bits (72), Expect = 4.8
Identities = 42/177 (23%), Positives = 71/177 (39%), Gaps = 28/177 (15%)
Query: 34 SIILERGRITSLGTKVKETGRLQEDRIEETI----QVLKEYKKLIDEFKVERVKAVATEA 89
SI+ + +T+ T+ + T ++ + E + KE K + E V++ EA
Sbjct: 63 SIVSQTTEVTTNVTETRFTEEPEDKKPSEEKPKKQKAKKEKKTKVVEAPEPIVESAVPEA 122
Query: 90 IRRAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEY 149
+ F+E EV VVE +TPE + ++ +P +V Q +TE
Sbjct: 123 VVEPTVEVTFVEEPVVEVTTVVEEVTPETQPEPTPVSEVAPSQPLSWSSIVSQ---TTEV 179
Query: 150 VFGKGYKVREVISLPIGIVNLTETFFKQDP----PTEEEVKRFFEFLEKELSKVKKP 202
N+TET F ++P P EE+ K+ EK+ V+ P
Sbjct: 180 T-----------------TNVTETRFTEEPEDKKPLEEKPKKQKPKKEKKTKVVEAP 219
Score = 32.5 bits (72), Expect = 4.8
Identities = 42/171 (24%), Positives = 67/171 (38%), Gaps = 31/171 (18%)
Query: 43 TSLGTKVKETGRLQEDRIEETIQVL-------KEYKKLIDEFKVERVKAVATEAIRRAKN 95
T + T V ET +E ++ ++ KE K + E V++ EA+
Sbjct: 177 TEVTTNVTETRFTEEPEDKKPLEEKPKKQKPKKEKKTKVVEAPEPIVESAVPEAVVEPTV 236
Query: 96 AEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGY 155
F+E EV VVE +TPE + ++ +P +V Q +TE
Sbjct: 237 EVTFVEEPVVEVTTVVEEVTPETQPEPTPVSEVAPSQPLSWSSIVSQ---TTEVT----- 288
Query: 156 KVREVISLPIGIVNLTETFFKQDP----PTEEEVKRFFEFLEKELSKVKKP 202
N+TET F ++P P EE+ K+ EK+ V+ P
Sbjct: 289 ------------TNVTETRFTEEPEDKKPLEEKPKKQKSKKEKKTKVVEAP 327
Score = 31.7 bits (70), Expect = 8.3
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 31/171 (18%)
Query: 43 TSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKA-------VATEAIRRAKN 95
T + T V ET +E ++ ++ + +K E K + V+A EA+
Sbjct: 285 TEVTTNVTETRFTEEPEDKKPLEEKPKKQKSKKEKKTKVVEAPEPIVESAVPEAVVEPTV 344
Query: 96 AEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGY 155
F+E EV VVE +TPE + ++ +P +V Q +TE
Sbjct: 345 EVTFVEEPVVEVTTVVEEVTPETQPEPTPVSEVAPSQPLSWSSIVSQ---TTEVT----- 396
Query: 156 KVREVISLPIGIVNLTETFFKQDP----PTEEEVKRFFEFLEKELSKVKKP 202
N+TET F ++P P EE+ K+ EK+ V+ P
Sbjct: 397 ------------TNVTETRFTEEPEDKKPLEEKPKKPKAKKEKKTKVVEAP 435
emb|CAB63770.1| (AL133654) hypothetical protein [Homo sapiens]
Length = 833
Score = 32.1 bits (71), Expect = 6.3
Identities = 25/81 (30%), Positives = 44/81 (53%), Gaps = 3/81 (3%)
Query: 22 RLTIAQIK-DGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVE 80
RLT+ Q + + K+ ++L + G + ET + ED+I++ + L YKK + K +
Sbjct: 597 RLTLQQKEHEQKMQLLLHHFKEQD-GEGIMETFKTYEDKIQQLEKDLYFYKKTSRDHK-K 654
Query: 81 RVKAVATEAIRRAKNAEEFLE 101
++K + EAIRR E+ E
Sbjct: 655 KLKELVGEAIRRQLAPSEYQE 675
dbj|BAA79100.1| (AP000058) 699aa long hypothetical DNA replication licensing
factor mcm [Aeropyrum pernix]
Length = 699
Score = 32.1 bits (71), Expect = 6.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 61 EETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEE 98
EET+ V + +K ++ F+ E K EAIRR N EE
Sbjct: 11 EETLAVGERFKTFLENFRTEEGKLKYVEAIRRMINYEE 48
dbj|BAA32515.1| (AB016977) outer surface protein (OspA) [Borrelia sp. 5MT]
Length = 273
Score = 32.1 bits (71), Expect = 6.3
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 2 SLDNKPIMRVASIDI-GSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGR-----L 55
SLD K AS+D+ G V ++ + KDGK S++ ++ GT K G +
Sbjct: 23 SLDEK---NSASVDLPGEMKVLVSKEKDKDGKYSLMATVDKVELKGTSDKNNGSGMLEGV 79
Query: 56 QEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVIT 115
++D+ + + + + K E E K + + + +K+ +E+ + L ++IT
Sbjct: 80 KDDKSKVKLTISDDLSKTTLETFKEDGKTLVSRKV-NSKDKSSTVEKFNEKGELSEKIIT 138
Query: 116 PEQEGRYAYLAV 127
E R Y +
Sbjct: 139 RENGTRLEYTEI 150
sp|O42296|APA1_ANAPL APOLIPOPROTEIN A-I PRECURSOR (APO-AI) >gi|2286119 (U86131)
apolipoprotein AI precursor [Anas sp.]
Length = 264
Score = 32.1 bits (71), Expect = 6.3
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 49 VKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVG 108
+K+T L+ + ++ +V ++ + +D+F + + + R A AEE E K++V
Sbjct: 99 LKDTESLRAELTKDLEEVKEKIRPFLDQFSAKWTEELEQYRQRLAPVAEELKELTKQKVE 158
Query: 109 LVVEVITPEQE 119
L+ + +TP E
Sbjct: 159 LMQQKLTPVAE 169
dbj|BAA13639| (D88539) synaptonemal complex protein 1 [Mus musculus]
Length = 693
Score = 32.1 bits (71), Expect = 6.3
Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 2/81 (2%)
Query: 56 QEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVIT 115
+E +EE +L E +KL+DE K +V+ +A E + + LE ++EV + E +T
Sbjct: 332 KEVELEELKNILAEDQKLLDEKK--QVEKLAEELQEKEQELTFLLETREKEVHDLQEQVT 389
Query: 116 PEQEGRYAYLAVAYSLKPEGE 136
+ YL +K E E
Sbjct: 390 VTKTSEQHYLKQVEEMKTELE 410
gi|735904 (L41069) testicular protein [Mus musculus]
Length = 1029
Score = 32.1 bits (71), Expect = 6.3
Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 2/81 (2%)
Query: 56 QEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVIT 115
+E +EE +L E +KL+DE K +V+ +A E + + LE ++EV + E +T
Sbjct: 462 KEVELEELKNILAEDQKLLDEKK--QVEKLAEELQEKEQELTFLLETREKEVHDLQEQVT 519
Query: 116 PEQEGRYAYLAVAYSLKPEGE 136
+ YL +K E E
Sbjct: 520 VTKTSEQHYLKQVEEMKTELE 540
sp|Q62209|SCP1_MOUSE SYNAPTONEMAL COMPLEX PROTEIN 1 (SCP-1 PROTEIN)
>gi|1083521|pir||S49461 synaptonemal complex protein 1 -
mouse >gi|558603|emb|CAA86262| (Z38118) synaptonemal
complex protein 1 [Mus musculus]
Length = 993
Score = 32.1 bits (71), Expect = 6.3
Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 2/81 (2%)
Query: 56 QEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVIT 115
+E +EE +L E +KL+DE K +V+ +A E + + LE ++EV + E +T
Sbjct: 426 KEVELEELKNILAEDQKLLDEKK--QVEKLAEELQEKEQELTFLLETREKEVHDLQEQVT 483
Query: 116 PEQEGRYAYLAVAYSLKPEGE 136
+ YL +K E E
Sbjct: 484 VTKTSEQHYLKQVEEMKTELE 504
gi|540268 (U14635) weak similarity to myosin heavy chain [Caenorhabditis
elegans]
Length = 459
Score = 32.1 bits (71), Expect = 6.3
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 47 TKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKRE 106
TK+ ET R+ E ++ET L E ++D K + ++ V +EA++R + + + + R+
Sbjct: 194 TKMNETLRILEKNLKETETNLSEANAMVD-CKQQELEMV-SEALKRLEESRHTISELNRK 251
Query: 107 VGLVVEVITPEQ 118
G + E +T Q
Sbjct: 252 SGNLEENVTELQ 263
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.317 0.138 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77081624
Number of Sequences: 444417
Number of extensions: 3137586
Number of successful extensions: 11732
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 11644
Number of HSP's gapped (non-prelim): 82
length of query: 312
length of database: 136,724,657
effective HSP length: 57
effective length of query: 255
effective length of database: 111,392,888
effective search space: 28405186440
effective search space used: 28405186440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 70 (31.7 bits)