Score E
Sequences producing significant alignments: (bits) Value
gi|2983422 (AE000712) hypothetical protein [Aquifex aeolicus] 541 e-153
sp|Q57846|Y403_METJA HYPOTHETICAL PROTEIN MJ0403 >gi|212907... 211 6e-54
dbj|BAA80774.1| (AP000062) 281aa long hypothetical protein ... 185 3e-46
gi|2621080 (AE000796) conserved protein [Methanobacterium t... 182 4e-45
gi|2648211 (AE000945) conserved hypothetical protein [Archa... 180 9e-45
emb|CAA69536| (Y08257) orf c05005 [Sulfolobus solfataricus] 180 9e-45
gb|AAD35181.1|AE001695_7 (AE001695) conserved hypothetical ... 153 1e-36
emb|CAB49461.1| (AJ248284) hypothetical protein [Pyrococcus... 151 7e-36
dbj|BAA30738| (AP000006) 294aa long hypothetical protein [P... 148 6e-35
gi|2983762 (AE000735) hypothetical protein [Aquifex aeolicus] 90 2e-17
gb|AAD27736.1|AF132961_1 (AF132961) CGI-27 protein [Homo sa... 85 8e-16
gi|1465834 (U64857) No definition line found [Caenorhabditi... 84 1e-15
sp|Q10212|YAY4_SCHPO HYPOTHETICAL 34.8 KD PROTEIN C4H3.04C ... 81 9e-15
ref|NP_012541.1|YJR008W| Yjr008wp >gi|1353049|sp|P47085|YJX... 77 2e-13
gb|AAD23663.1|AC007070_12 (AC007070) hypothetical protein [... 76 4e-13
gi|2425141 (AF020286) similar to C. elegans CEESS08F encode... 76 4e-13
pir||S27738 hypothetical protein D - Thermus aquaticus 55 8e-07
gi|295400 (M33159) The first start codon in ORFD is located... 55 8e-07
dbj|BAA29848| (AP000003) 262aa long hypothetical protein [P... 41 0.014
gb|AAD24449.1|AF118389_6 (AF118389) Cps2C [Streptococcus suis] 34 1.4
emb|CAB43392.1| (AL050291) hypothetical protein [Homo sapiens] 34 1.8
emb|CAA06290| (AJ005016) ABC transporter [Homo sapiens] 34 1.8
gi|2650478 (AE001094) A. fulgidus predicted coding region A... 34 1.8
gi|2736297 (AF031084) SdeK [Myxococcus xanthus] 32 7.0
gb|AAD36337.1|AE001781_8 (AE001781) phosphate ABC transport... 31 9.2
gb|AAD29247.1|AF101064_1 (AF101064) intermediate filament m... 31 9.2
emb|CAA10261| (AJ130956) annexin P38 [Capsicum annuum] 31 9.2
emb|CAB10575.1| (Z97348) predicted using hexExon; MAL3P1.10... 31 9.2
gi|2983422 (AE000712) hypothetical protein [Aquifex aeolicus]
Length = 267
Score = 541 bits (1380), Expect = e-153
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MRVREPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYK 60
MRVREPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYK
Sbjct: 1 MRVREPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYK 60
Query: 61 RIEIPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYPYANPDEYAH 120
RIEIPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYPYANPDEYAH
Sbjct: 61 RIEIPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYPYANPDEYAH 120
Query: 121 LYEHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFLGEVLKEEDALIVISSDM 180
LYEHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFLGEVLKEEDALIVISSDM
Sbjct: 121 LYEHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFLGEVLKEEDALIVISSDM 180
Query: 181 SHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCGVVPAVVGIESAKVLGATKG 240
SHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCGVVPAVVGIESAKVLGATKG
Sbjct: 181 SHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCGVVPAVVGIESAKVLGATKG 240
Query: 241 IVVDYSNSGDTTGDYSQVVAYLGMIFL 267
IVVDYSNSGDTTGDYSQVVAYLGMIFL
Sbjct: 241 IVVDYSNSGDTTGDYSQVVAYLGMIFL 267
sp|Q57846|Y403_METJA HYPOTHETICAL PROTEIN MJ0403 >gi|2129073|pir||C64350 hypothetical
protein YJR008w homolog - Methanococcus jannaschii
>gi|1591108 (U67492) conserved hypothetical protein
[Methanococcus jannaschii]
Length = 287
Score = 211 bits (531), Expect = 6e-54
Identities = 126/284 (44%), Positives = 169/284 (59%), Gaps = 21/284 (7%)
Query: 2 RVREPAVAGTFYPKDKEELNKLMD--LLCGFEPKEKI------KPKAILVPHAGYIYSGK 53
++R PAVAG FYP +EL +++ L F PK KP +L PHAGY+YSG
Sbjct: 3 KIRYPAVAGLFYPSHPDELIDMIEQCYLHKFGPKSMPVHGTYEKPIGLLCPHAGYVYSGP 62
Query: 54 TACEVY----KRIEIPEK--VVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKI 107
Y KR++ E+ VV+LGPNHTGLG +SV G W TP G V+ D E E++
Sbjct: 63 IQAHSYYELSKRVDALEETTVVILGPNHTGLGSGVSVMDG-IWRTPLGDVKCDEEFVEEL 121
Query: 108 L-KYPYANPDEYAHLYEHSLEVQLPFLQRYAR---REFKILPIVVTFVEYEVAKDFGRFL 163
K + DE AHL EHS+EVQLPFL+ +FKI+PI + F +YE A + G F+
Sbjct: 122 WRKCEIVDLDETAHLNEHSIEVQLPFLKHLELLNIAKFKIVPICMMFQDYETAVEVGYFI 181
Query: 164 GEVLKEEDALIVI--SSDMSHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCG 221
++ KE + IV+ SSD++HY P E A KKD I+I + +N +ELY V YNI+MCG
Sbjct: 182 AKIAKELNRRIVVIASSDLTHYEPQEIASKKDAIVIKDILEMNEKELYEDVVNYNISMCG 241
Query: 222 VVPAVVGIESAKVLGATKGIVVDYSNSGDTTGDYSQVVAYLGMI 265
P + +++ K LGA K ++ Y+ SGD TGDYS VV Y I
Sbjct: 242 YGPVIAMLKAMKTLGAEKAKLLAYATSGDITGDYSAVVGYASAI 285
dbj|BAA80774.1| (AP000062) 281aa long hypothetical protein [Aeropyrum pernix]
Length = 281
Score = 185 bits (466), Expect = 3e-46
Identities = 109/277 (39%), Positives = 161/277 (57%), Gaps = 17/277 (6%)
Query: 1 MRVREPAVAGTFYPKDKEELNKLMD------LLCGFEPKEK----IKPKAILVPHAGYIY 50
M++R PA AGTFYP +EEL K ++ L G P+ + A + PHAGY+Y
Sbjct: 1 MKIRNPAHAGTFYPATREELVKSIESSFTHPLGPGRLPQRGGGSGEQAIAYIPPHAGYMY 60
Query: 51 SGKTACEVYKRIEI---PEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKI 107
SG A VY + + P+ VVLLGPNHTGLG S++ W TP G VE+D E +
Sbjct: 61 SGPIAAHVYYDMSLGRKPDVVVLLGPNHTGLGLAASLWDEGVWRTPLGEVEVDSEAGRLV 120
Query: 108 LKYP-YANPDEYAHLYEHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFLGEV 166
++Y PD+ H+YEHSLEVQLPFLQ +F+I+PIVV +++ R +
Sbjct: 121 VEYSGIVAPDDEGHIYEHSLEVQLPFLQYLYGGDFRIVPIVVLHQTLDISIRIARAYHRL 180
Query: 167 LKEE--DALIVISSDMSHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCGVVP 224
+E +A++V +SD++HY P EE ++KD +L+ A+E + E ++ + I+ CG P
Sbjct: 181 REENGVNAVLVATSDLNHYEPYEENKRKDLLLLKAIEEGDPEAVFKTIEAHAISACGPSP 240
Query: 225 AVVGIESAKVLGATKGIVVDYSNSGDTTGDYSQVVAY 261
+E+ ++ G K V+ Y+NSGD TG+ + VV Y
Sbjct: 241 IAAAVEAGRLAG-VKPRVLAYANSGDVTGEKAWVVGY 276
gi|2621080 (AE000796) conserved protein [Methanobacterium thermoautotrophicum]
Length = 277
Score = 182 bits (456), Expect = 4e-45
Identities = 102/273 (37%), Positives = 149/273 (54%), Gaps = 15/273 (5%)
Query: 3 VREPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKP--------KAILVPHAGYIYSGKT 54
+R PAVAG FY +D L + ++ E P K ++ PHAGY+YSG
Sbjct: 2 IRRPAVAGAFYERDPAALRRRIEWCFEHELGPGTLPAVGSMRRIKGVIAPHAGYMYSGPV 61
Query: 55 ACEVYKRIE---IPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYP 111
A Y + IP +V++ PNHTG+G +S+ AWETP G VEID EL E I++
Sbjct: 62 AAHAYHELVSDGIPGTLVIICPNHTGMGSGVSLMQQGAWETPLGTVEIDSELAEAIVRES 121
Query: 112 -YANPDEYAHLYEHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFLGEVLKE- 169
+ DE AHL EHS EV +PF+Q Y F+I+P+ + +E A D G + ++E
Sbjct: 122 GIIDLDETAHLAEHSCEVHVPFIQ-YFTDNFRIVPVTMWMQGHETAADVGHAVASAIRET 180
Query: 170 -EDALIVISSDMSHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCGVVPAVVG 228
DA ++ S+D +HY P + A D +I + ++ +Y + N TMCG P
Sbjct: 181 GRDAAVIASTDFTHYSPQDIAEATDRRIIDRITAMDDTGMYGVISELNATMCGYGPVAAT 240
Query: 229 IESAKVLGATKGIVVDYSNSGDTTGDYSQVVAY 261
I ++++LGAT+ ++ Y+ SGD TGD S VV Y
Sbjct: 241 IIASRILGATECDLLRYATSGDVTGDRSSVVGY 273
gi|2648211 (AE000945) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 261
Score = 180 bits (453), Expect = 9e-45
Identities = 109/266 (40%), Positives = 155/266 (57%), Gaps = 9/266 (3%)
Query: 3 VREPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYKRI 62
+R P VAG+FYP + E L ++ P + A + PHAGY+YSG+TA +V+ +
Sbjct: 1 MRHPRVAGSFYPANPESLLAMLREYT--YPAKDESVIACVSPHAGYVYSGRTAGKVHSLL 58
Query: 63 EIPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYPYANPDEYAHLY 122
E V++GPNHTG G P++V S D W TP G VE+D E E + K A PDE AH Y
Sbjct: 59 PDAETFVIVGPNHTGYGLPVAV-STDTWLTPLGEVEVDTEFVEAMPKIITA-PDEIAHRY 116
Query: 123 EHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFLGEVLKE--EDALIVISSDM 180
EHSLEVQ+PFLQ Y +FKI+PI + + E A + + +E +++ SSDM
Sbjct: 117 EHSLEVQVPFLQ-YLHDDFKIVPICLGMQDEETAMEVAEEILTAERETGRKVVVIASSDM 175
Query: 181 SHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCGVVPAVVGIESAKVLGATKG 240
HY+P EE R+ D I+I A+ ++ ++ Y + ++CG V + +K GA +
Sbjct: 176 HHYLPDEECRRLDSIVIDAILSMDVKKYYETIYRLQASVCGYGCIAVAMYYSKAKGA-RA 234
Query: 241 IVVDYSNSGDTTGDYSQVVAYLGMIF 266
+VDYS SGD D SQVV Y G++F
Sbjct: 235 ELVDYSTSGD-VADRSQVVGYAGIVF 259
emb|CAA69536| (Y08257) orf c05005 [Sulfolobus solfataricus]
Length = 284
Score = 180 bits (453), Expect = 9e-45
Identities = 109/283 (38%), Positives = 161/283 (56%), Gaps = 23/283 (8%)
Query: 4 REPAVAGTFYPKDKEELNKLMDLLCGFE--------PKEKIKPKA-----ILVPHAGYIY 50
R PAVAG+FY D ++L M + F PK+ + K +VPHAGYIY
Sbjct: 3 RLPAVAGSFYESDPKKLK--MQIEWSFRHNIGPRDIPKQSYEKKKRDNLFFIVPHAGYIY 60
Query: 51 SGKTACEVYKRIEI---PEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGE-LREK 106
SG A Y + P+ V++LGPNHTGLG +S + WETP G V++D E L +
Sbjct: 61 SGPVAAHSYYYLASEGKPDVVIILGPNHTGLGSYVSAWPKGEWETPLGSVKVDEEVLMQL 120
Query: 107 ILKYPYANPDEYAHLYEHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFLGEV 166
+++ + +E +HLYEHS+EVQLPFLQ + FKI+PIV+ E+A+ + +V
Sbjct: 121 VMESEVIDLEEKSHLYEHSIEVQLPFLQYFFDDNFKIVPIVIMMQTPEIAEFLADAIYKV 180
Query: 167 LK---EEDALIVISSDMSHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCGVV 223
++ ++D +++ SSDM+HY P E KKDE I +++L+ LY ++T+CG
Sbjct: 181 IQKYSDKDIVVLASSDMNHYDPHEITMKKDEEAIEKIQQLDYRGLYEVVEGKDVTLCGYG 240
Query: 224 PAVVGIESAKVLGATKGIVVDYSNSGDTTGDYSQVVAYLGMIF 266
P +V + AK LG K ++ ++ SGDT+G VV YL F
Sbjct: 241 PIMVSLILAKKLG-KKAYILKHATSGDTSGPKDSVVGYLAARF 282
gb|AAD35181.1|AE001695_7 (AE001695) conserved hypothetical protein [Thermotoga maritima]
Length = 277
Score = 153 bits (383), Expect = 1e-36
Identities = 100/279 (35%), Positives = 149/279 (52%), Gaps = 23/279 (8%)
Query: 4 REPAVAGTFYPKDKEELNKLMDL-----------LCGFEPKEKIKPKAILVPHAGYIYSG 52
R+PAVAG FYP ++EL + + + L G + P ++ PHAGYIYSG
Sbjct: 3 RKPAVAGLFYPSRRDELIEQIRMCFLDKRIGPGKLPGPVETKLQNPIGLVSPHAGYIYSG 62
Query: 53 KTAC----EVYKRIEIPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKIL 108
A E K E P VV++GPNHTGLG+P+ V+ WETP G V ++ E +L
Sbjct: 63 PVAAWGFLEAVKFGE-PSVVVIIGPNHTGLGRPVGVWPEGEWETPLGTVPVNERAVEIVL 121
Query: 109 KYP-YANPDEYAHLYEHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFLGEVL 167
YA D +H+ EHS+EVQ+PFLQ + E I+PI + VA+D L +++
Sbjct: 122 SNSRYAEEDFMSHIREHSIEVQIPFLQ-FVFGEVSIVPICLMDQSPAVAEDLASALAKLV 180
Query: 168 KE-EDALIVISSDMSHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCGVVPAV 226
E LI+ S+D++HY +KD +I A+E ++ LY V+ +I+MCG
Sbjct: 181 AEFPGVLIIASTDLNHYEDQRTTLRKDSYIIEAIEGMDPSLLYEYLVREDISMCG----Y 236
Query: 227 VGIESAKVLGATKGIVVDYSNSGDTTGDYSQVVAYLGMI 265
G+ + + ++ ++ SGD +GD +VV YL I
Sbjct: 237 GGVATLLNMDFENVRILKHATSGDVSGDTLEVVGYLSAI 275
emb|CAB49461.1| (AJ248284) hypothetical protein [Pyrococcus abyssi]
Length = 291
Score = 151 bits (377), Expect = 7e-36
Identities = 97/287 (33%), Positives = 155/287 (53%), Gaps = 24/287 (8%)
Query: 3 VREPAVAGTFYPKDKEELNKLMDLLCGF-EPKEKIKPKAILVPHAGYIYSGKTACEVYKR 61
+R PAVAG FYP+ + + L + E K A + PHAGY++SG TA YK
Sbjct: 2 IRYPAVAGQFYPEGETLVEMLEEFFRDLGEQGNSRKITAGVAPHAGYVFSGYTASRTYKA 61
Query: 62 IE---IPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKY-PYANPDE 117
I +PE V+ GPNHTGLG PI+VY W TP G V+ID EL ++I+K A+ D+
Sbjct: 62 IYEDGLPETFVIFGPNHTGLGSPIAVYPEGDWVTPLGKVKIDSELAKEIVKLSKIADLDD 121
Query: 118 YAHLYEHSLEVQLPFLQRYARR---EFKILPIVVTFVEYEVAKDFGRFLGEVLKE--EDA 172
AH YEHS+EVQLPF+Q A + +F+I+PI + + +V++ GR + E + D
Sbjct: 122 LAHKYEHSIEVQLPFIQYIAEKAGTDFRIVPITLGIQDEDVSEALGRAVFEAAEALGRDV 181
Query: 173 LIVISSDMSH------YVP----AEE----ARKKDEILISAMERLNTEELYFKAVQYNIT 218
+++ S+D H YVP A E ++ D +I + + + ++ + + + T
Sbjct: 182 IVIASTDFMHYGSFYGYVPFRGRANELPNMVKEWDMRIIRRILDFDLKGMFEEIREMDHT 241
Query: 219 MCGVVPAVVGIESAKVLGATKGIVVDYSNSGDTTGDYSQVVAYLGMI 265
MCG GI ++++ A + ++ Y+ S + + +V Y ++
Sbjct: 242 MCGPGGVGAGIVYSRLMNAREAELLHYTTSFEVSRSTDAIVGYASIV 288
dbj|BAA30738| (AP000006) 294aa long hypothetical protein [Pyrococcus horikoshii]
Length = 294
Score = 148 bits (369), Expect = 6e-35
Identities = 101/290 (34%), Positives = 153/290 (51%), Gaps = 32/290 (11%)
Query: 4 REPAVAGTFYPKDKEELNKLMDLLCGF-----EPKEKIKPKAILVPHAGYIYSGKTACEV 58
R PAVAG FYP E + L+++L F E K A + PHAGY++SG TA
Sbjct: 6 RYPAVAGQFYP----EGDALIEMLSSFFKDLGEEGTKRTITAGVAPHAGYVFSGFTASRT 61
Query: 59 YKRIE---IPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYP-YAN 114
YK I +PE V+ GPNHTGLG PI++Y W TP G +++D + ++I+K A+
Sbjct: 62 YKAIYEDGLPEVFVIFGPNHTGLGSPIALYPEGEWITPMGSIKVDSKFAKEIVKRSGIAD 121
Query: 115 PDEYAHLYEHSLEVQLPFLQRYARR---EFKILPIVVTFVEYEVAKDFGRFLGEVLKE-- 169
D+ AH YEHS+EVQLPF+Q A + E KI+PI + + EV++ GR + E
Sbjct: 122 LDDLAHKYEHSIEVQLPFIQYIAEKAGVEVKIVPITLGIQDEEVSRSLGRSIFEASTSLG 181
Query: 170 EDALIVISSDMSH------YVP----AEE----ARKKDEILISAMERLNTEELYFKAVQY 215
D +I+ S+D H YVP EE R D +I + + + ++ + +
Sbjct: 182 RDTIIIASTDFMHYGSFYGYVPFRGRPEELPNMVRDWDMRIIRRILDFDLDGMFSEIREM 241
Query: 216 NITMCGVVPAVVGIESAKVLGATKGIVVDYSNSGDTTGDYSQVVAYLGMI 265
N TMCG GI ++++ A + ++ Y+ S + + +V Y +I
Sbjct: 242 NHTMCGPGGVGAGIIYSRLMKAKEAELLHYTTSFEVSRSPDAIVGYASII 291
gi|2983762 (AE000735) hypothetical protein [Aquifex aeolicus]
Length = 374
Score = 89.7 bits (219), Expect = 2e-17
Identities = 82/276 (29%), Positives = 134/276 (47%), Gaps = 18/276 (6%)
Query: 4 REPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYKRIE 63
REP+ AG YP++ +EL ++ + EK K + ILVPH + VY I+
Sbjct: 103 REPSHAGQAYPENPQELKNFIEETVN-KNSEKFKARGILVPHMDLRVASGVYGSVYSAIK 161
Query: 64 IPE--KVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILK-YPY-ANPDEYA 119
E VVLLG +H P SV D TP G +++D E E++ K + Y + D A
Sbjct: 162 ENEYDTVVLLGVSHYFHETPFSVLPLDL-RTPLGDLKVDIERVEELQKMFDYDLSHDVLA 220
Query: 120 HLYEHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFLGEVLKE-EDALIVISS 178
+ EHS+E Q FL +Y E K++P +V++ + + K+ + +VL++ ++ LI+ S
Sbjct: 221 YKNEHSIEFQTIFL-KYLFPEVKVIPAIVSYGDTKSLKEIAHKITKVLEDSQNPLIISSV 279
Query: 179 DMSHY------VPAEEARKKDEILISAMERLNTEELY--FKAVQYNITMCGVVPAVVGIE 230
D SH + + +D I+ + L EE + ++ + G V +E
Sbjct: 280 DFSHVGRKFGDPHSYDPSPRDREYINLLAELKNEEAFNLLQSDNNRTRIDGQFTNFVFLE 339
Query: 231 SAKVLGATKGIVVDYSNSGDTTGDYSQVVAYLGMIF 266
K LG +G ++DY + D V+Y GM+F
Sbjct: 340 ILKNLGVKEGKLLDYDVYHEAPTD--SKVSYAGMVF 373
Score = 32.5 bits (72), Expect = 4.1
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 102 ELREKILKYPYANPDEYAHLYEHSLEVQLPFLQRYARR---EFKILPIVVTFVEYEVAKD 158
E REKILK Y P Y + + F++ + +FK I+V ++ VA
Sbjct: 92 EEREKILKKGYREPSHAGQAYPENPQELKNFIEETVNKNSEKFKARGILVPHMDLRVASG 151
Query: 159 FGRFLGEVLKEEDALIVISSDMSHY 183
+ +KE + V+ +SHY
Sbjct: 152 VYGSVYSAIKENEYDTVVLLGVSHY 176
gb|AAD27736.1|AF132961_1 (AF132961) CGI-27 protein [Homo sapiens]
Length = 297
Score = 84.7 bits (206), Expect = 8e-16
Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 20/241 (8%)
Query: 4 REPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYKRIE 63
RE + AG++Y +LN ++ K +AI+ PHAGY Y G A YK+++
Sbjct: 8 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVD 67
Query: 64 --IPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKY-PYANPDEYAH 120
I ++ +LGP+H ++ S D + TP + ID ++ ++ K +
Sbjct: 68 PSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTD 127
Query: 121 LYEHSLEVQLPFLQRYA---RREFKILPIVVTFVEYEVAKDFGRFLGEVLKEEDALIVIS 177
EHS+E+ LP+ + + EF I+P++V + ++FG+ + L + L V+S
Sbjct: 128 EDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVS 187
Query: 178 SDMSH------YVPAEEARKK--------DEILISAMERLNTEELYFKAVQYNITMCGVV 223
SD H Y +E++ + D++ +S +E+L+ +Y+ T+CG
Sbjct: 188 SDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRH 247
Query: 224 P 224
P
Sbjct: 248 P 248
gi|1465834 (U64857) No definition line found [Caenorhabditis elegans]
Length = 302
Score = 83.9 bits (204), Expect = 1e-15
Identities = 63/251 (25%), Positives = 122/251 (48%), Gaps = 23/251 (9%)
Query: 4 REPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYKRI- 62
R + AG++Y ++ +L++ + +A++ PHAGY Y G+TA +K++
Sbjct: 11 RSASHAGSWYNANQRDLDRQLTKWLDNAGPRIGTARALISPHAGYSYCGETAAYAFKQVV 70
Query: 63 -EIPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYPYAN-PDEYAH 120
E+V +LGP+H ++ + + TP G + +D ++ E++ + + D
Sbjct: 71 SSAVERVFILGPSHVVALNGCAITTCSKYRTPLGDLIVDHKINEELRATRHFDLMDRRDE 130
Query: 121 LYEHSLEVQLPFLQR-YARREFKILPIVVTFVEYEVAKDFGRFLGEVLKEEDALIVISSD 179
EHS+E+QLPF+ + + + I+P++V + + +G +++ L VISSD
Sbjct: 131 ESEHSIEMQLPFIAKVMGSKRYTIVPVLVGSLPGSRQQTYGNIFAHYMEDPRNLFVISSD 190
Query: 180 MSHY--------------VPA-EEARKKDEILISAMERLNTEEL--YFKAVQYNITMCGV 222
H+ +P E+ D+ +SA+E LN Y K Q T+CG
Sbjct: 191 FCHWGERFSFSPYDRHSSIPIYEQITNMDKQGMSAIETLNPAAFNDYLKKTQN--TICGR 248
Query: 223 VPAVVGIESAK 233
P ++ +++A+
Sbjct: 249 NPILIMLQAAE 259
sp|Q10212|YAY4_SCHPO HYPOTHETICAL 34.8 KD PROTEIN C4H3.04C IN CHROMOSOME I
>gi|1184017|emb|CAA93343.1| (Z69380) hypothetical
protein [Schizosaccharomyces pombe]
Length = 309
Score = 81.1 bits (197), Expect = 9e-15
Identities = 54/194 (27%), Positives = 98/194 (49%), Gaps = 18/194 (9%)
Query: 3 VREPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYKRI 62
+RE AG++Y D E L K + P + + ++ PHAGY+YSGK A + ++++
Sbjct: 5 IREATHAGSWYLDDTELLTKQLKSFIK-NPTPETGKRFVISPHAGYMYSGKVASQGFQQL 63
Query: 63 EIP--EKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYPYANPDEYAH 120
+ ++V + GP+H + V TP G +++D +L +K++ A+ + +
Sbjct: 64 DFSKIQRVFVFGPSHHIFTRKCLVSRASICSTPLGDLKVDEDLCQKLV----ASDNSFDS 119
Query: 121 L------YEHSLEVQLPFLQRYARRE-----FKILPIVVTFVEYEVAKDFGRFLGEVLKE 169
+ EHSLE+Q P L + ++ KI+PI++ + +FL + +K+
Sbjct: 120 MTLDVDESEHSLEMQFPLLAFHLLKQGCLGKVKIVPIMIGALTSTTMMAAAKFLSQYIKD 179
Query: 170 EDALIVISSDMSHY 183
E VISSD H+
Sbjct: 180 ESNSFVISSDFCHW 193
ref|NP_012541.1|YJR008W| Yjr008wp >gi|1353049|sp|P47085|YJX8_YEAST HYPOTHETICAL 38.5 KD
PROTEIN IN SUI2-TDH2 INTERGENIC REGION
>gi|1077864|pir||S55196 hypothetical protein YJR008w -
yeast (Saccharomyces cerevisiae)
>gi|854581|emb|CAA60930| (X87611) ORF YJR83.9
[Saccharomyces cerevisiae] >gi|1015634|emb|CAA89530|
(Z49508) ORF YJR008w [Saccharomyces cerevisiae]
Length = 338
Score = 76.9 bits (186), Expect = 2e-13
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 20/203 (9%)
Query: 1 MRVREPAVAGTFYPKDKEELNK-LMDLLCGFEPKEKI-KPKAILVPHAGYIYSGKTACEV 58
M +R AG++Y +EL++ L L K I + I+ PHAGY Y G T
Sbjct: 1 MSIRPATHAGSWYSNRAQELSQQLHTYLIKSTLKGPIHNARIIICPHAGYRYCGPTMAYS 60
Query: 59 YKRIEI---PEKVVLLGPNHTGLGK-PISVYSGDAWETPYGVVEIDGELREKIL--KYP- 111
Y +++ +++ +LGP+H K I V + ETP G +++D +L + ++ +YP
Sbjct: 61 YASLDLNRNVKRIFILGPSHHIYFKNQILVSAFSELETPLGNLKVDTDLCKTLIQKEYPE 120
Query: 112 -----YANPDEYAHLYEHSLEVQLPFLQRYAR-REF-----KILPIVVTFVEYEVAKDFG 160
+ D + EHSLE+QLP L + RE K+ P++V+ +V + G
Sbjct: 121 NGKKLFKPMDHDTDMAEHSLEMQLPMLVETLKWREISLDTVKVFPMMVSHNSVDVDRCIG 180
Query: 161 RFLGEVLKEEDALIVISSDMSHY 183
L E +K+ + L ++SSD H+
Sbjct: 181 NILSEYIKDPNNLFIVSSDFCHW 203
gb|AAD23663.1|AC007070_12 (AC007070) hypothetical protein [Arabidopsis thaliana]
Length = 291
Score = 75.7 bits (183), Expect = 4e-13
Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 5/187 (2%)
Query: 2 RVREPAVAGTFYPKDKEELNK-LMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYK 60
++R+P AG++Y + +L+ L + L + + ++ PHAGY YSG+ A +
Sbjct: 3 KIRQPTHAGSWYTDNPTKLSSDLEEWLNATGLTKSPDVRGVIAPHAGYSYSGRAAAYAFA 62
Query: 61 RIEIP--EKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKY-PYANPDE 117
I+ ++ LLGP+H ++ + ++TP G + +D E+ ++I + D
Sbjct: 63 NIDPTNISRIFLLGPSHHFYTPKCALSTATVYKTPIGNLPVDVEMIKEIRAMGKFGMMDL 122
Query: 118 YAHLYEHSLEVQLPFLQR-YARREFKILPIVVTFVEYEVAKDFGRFLGEVLKEEDALIVI 176
EHS+E+ LP+L + + K++PI+V V E +G L + + + +
Sbjct: 123 RVDEAEHSMEMHLPYLAKVFEGNNVKVVPILVGAVSPENEAMYGELLAKYVDDPKNFFSV 182
Query: 177 SSDMSHY 183
SSD H+
Sbjct: 183 SSDFCHW 189
gi|2425141 (AF020286) similar to C. elegans CEESS08F encoded by GenBank
Accession Number U64857 [Dictyostelium discoideum]
Length = 168
Score = 75.7 bits (183), Expect = 4e-13
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 3 VREPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPHAGYIYSGKTACEVYKRI 62
+R AG++Y + +L K + + K+I+ PHAGY YSG+ A Y +
Sbjct: 2 IRNCTHAGSWYLDNARKLEKQLSDWLSEASRLNQNVKSIIAPHAGYSYSGRAAAYAYINL 61
Query: 63 EIPE---KVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILK-----YPYAN 114
IPE +V +LGP+H K + D WETP G +++D + K+ + +
Sbjct: 62 -IPENYKRVFILGPSHHVYMKTCGLTKLDTWETPIGNLKVDKDTTNKLFDTGSFIWNTKS 120
Query: 115 PDEYAHLYEHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFGRFL 163
DE EHSLE+QLP++ + A I+PI+V + ++ + +G+ L
Sbjct: 121 VDE----DEHSLELQLPYIAKVAE---NIVPIMVGSLSIDLEELYGKIL 162
pir||S27738 hypothetical protein D - Thermus aquaticus
Length = 339
Score = 54.7 bits (129), Expect = 8e-07
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 2 RVREPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPH-----AGYIYSGKTAC 56
R R +AG YP+ + E ++ P E + + +L+PH +Y A
Sbjct: 70 RERPMRLAGLSYPEGEREARAFLEAFRASYPGEGEEARVLLMPHLEPSRVPEVYG--AAL 127
Query: 57 EVYKRIEIPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEID---GELREKILKYPYA 113
++ PE++ L+G H L K + ++TP+G D + + +L +
Sbjct: 128 AALEKTPPPERIYLVGVAHRPL-KEKAAALPVPFQTPFGPALPDLPALQALDALLPFELF 186
Query: 114 NPDEYAHLYEHSLEVQLPFLQ-RYARREFKILPIVVTFVEYEVAKDFGRFLGEVLKEEDA 172
N A EHSLE+ L FL+ R+ E ++LP++V + + G L VL++
Sbjct: 187 N-TPLAFREEHSLELPLFFLKGRFP--EARVLPLLVA----RRSPELGEALKVVLRDFPG 239
Query: 173 LIVISSDMSHYVP-----------AEEARKKDEILISAMERL 203
L+V++ D+SH P AEEAR++D + +ERL
Sbjct: 240 LLVLAVDLSHVGPRFGDTPLTRTLAEEARRRD---LGFLERL 278
gi|295400 (M33159) The first start codon in ORFD is located at position 2046
[Thermus thermophilus]
Length = 326
Score = 54.7 bits (129), Expect = 8e-07
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 2 RVREPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAILVPH-----AGYIYSGKTAC 56
R R +AG YP+ + E ++ P E + + +L+PH +Y A
Sbjct: 57 RERPMRLAGLSYPEGEREARAFLEAFRASYPGEGEEARVLLMPHLEPSRVPEVYG--AAL 114
Query: 57 EVYKRIEIPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEID---GELREKILKYPYA 113
++ PE++ L+G H L K + ++TP+G D + + +L +
Sbjct: 115 AALEKTPPPERIYLVGVAHRPL-KEKAAALPVPFQTPFGPALPDLPALQALDALLPFELF 173
Query: 114 NPDEYAHLYEHSLEVQLPFLQ-RYARREFKILPIVVTFVEYEVAKDFGRFLGEVLKEEDA 172
N A EHSLE+ L FL+ R+ E ++LP++V + + G L VL++
Sbjct: 174 N-TPLAFREEHSLELPLFFLKGRFP--EARVLPLLVA----RRSPELGEALKVVLRDFPG 226
Query: 173 LIVISSDMSHYVP-----------AEEARKKDEILISAMERL 203
L+V++ D+SH P AEEAR++D + +ERL
Sbjct: 227 LLVLAVDLSHVGPRFGDTPLTRTLAEEARRRD---LGFLERL 265
dbj|BAA29848| (AP000003) 262aa long hypothetical protein [Pyrococcus horikoshii]
Length = 262
Score = 40.6 bits (93), Expect = 0.014
Identities = 44/184 (23%), Positives = 85/184 (45%), Gaps = 38/184 (20%)
Query: 57 EVYKRIEIPEKVVLLGPNHTGLGKPISVYSGD---AWETPYGVVEIDGE--------LRE 105
E+ +R++ E VL+ P++ + + + + W P+ V + E L E
Sbjct: 31 EIGRRLKDSETYVLISPHNVRISDKLGIIMTEYLIPW-LPFNDVHVPSESEYKTDRMLAE 89
Query: 106 KILK-----YPYANPDEYAHLYEHSLE-------VQLPFLQRYARREFKILPIVVTFVEY 153
KI K +P + + + +S + L FL++ +I+ + ++
Sbjct: 90 KIFKEARGRFPIVDINFASAKGRYSRFPLTWGEIIPLHFLEKR-----EIVLLTPARIDR 144
Query: 154 EVAKDFGRFLGEVLKEEDALI--VISSDMSH-------YVPAEEARKKDEILISAMERLN 204
+ +FGRFLG++L+EE+ I +IS+D H Y A+E+ + D+I+ A++ N
Sbjct: 145 NILVEFGRFLGKLLEEEEKKIGLIISADHGHAHDEKGPYGYAKESEEYDKIITEALKSSN 204
Query: 205 TEEL 208
E L
Sbjct: 205 LETL 208
gb|AAD24449.1|AF118389_6 (AF118389) Cps2C [Streptococcus suis]
Length = 225
Score = 34.0 bits (76), Expect = 1.4
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 194 EILISAMERLNTEELYFKAVQYNITMCGVVPAVVGIESAKVLGATKGIVVDYSNSGDTTG 253
EI + E +N E YF A++ NI + G VVGI S K SN G +T
Sbjct: 5 EIARTKREGVNKTEEYFNAIRTNIQLSGADIKVVGITSVK------------SNEGKSTT 52
Query: 254 DYSQVVAY 261
S +AY
Sbjct: 53 AASLAIAY 60
emb|CAB43392.1| (AL050291) hypothetical protein [Homo sapiens]
Length = 634
Score = 33.6 bits (75), Expect = 1.8
Identities = 27/109 (24%), Positives = 47/109 (42%), Gaps = 16/109 (14%)
Query: 30 FEPKEKIKPKAILVPHAGYIYSGKTACEVYKRIE----IPEKVVLLGPNHTGLGKPISVY 85
F P KI P I+V + + Y+ C +Y +E + +V L+GPN G + +
Sbjct: 385 FPPCGKIPPPVIMVQNVSFKYTKDGPC-IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLL 443
Query: 86 SGDAWETPYGVVEIDGELREKILKYPYANPDEYAHLYEHSLEVQLPFLQ 134
+G+ T DG +R K+ + Y + L++ L L+
Sbjct: 444 TGELLPT-------DGMIR----KHSHVKIGRYHQHLQEQLDLDLSPLE 481
emb|CAA06290| (AJ005016) ABC transporter [Homo sapiens]
Length = 550
Score = 33.6 bits (75), Expect = 1.8
Identities = 27/109 (24%), Positives = 47/109 (42%), Gaps = 16/109 (14%)
Query: 30 FEPKEKIKPKAILVPHAGYIYSGKTACEVYKRIE----IPEKVVLLGPNHTGLGKPISVY 85
F P KI P I+V + + Y+ C +Y +E + +V L+GPN G + +
Sbjct: 312 FPPCGKIPPPVIMVQNVSFKYTKDGPC-IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLL 370
Query: 86 SGDAWETPYGVVEIDGELREKILKYPYANPDEYAHLYEHSLEVQLPFLQ 134
+G+ T DG +R K+ + Y + L++ L L+
Sbjct: 371 TGELLPT-------DGMIR----KHSHVKIGRYHQHLQEQLDLDLSPLE 408
gi|2650478 (AE001094) A. fulgidus predicted coding region AF0170
[Archaeoglobus fulgidus]
Length = 434
Score = 33.6 bits (75), Expect = 1.8
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 80 KPISVYSGDAWETPYGVVEIDGELREKILKYPYANPDEYAHLYEHSLEVQLPFL-QRYAR 138
KP+ Y D T ++ + E+ + +LK PD Y + E L + +L QR
Sbjct: 259 KPVHPYEIDTTITAEQLISLPEEV-QNLLKGQLLKPDSYEVVREDDLRLDEGYLSQREIN 317
Query: 139 REFKILPIVVTFVE 152
FK LP +TFV+
Sbjct: 318 AIFKALPFDITFVD 331
gi|2736297 (AF031084) SdeK [Myxococcus xanthus]
Length = 513
Score = 31.7 bits (70), Expect = 7.0
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 163 LGEVLKEEDALIVISSDMSHYVPAEEARKKDEILISAMERLNTEELYFKAVQYNITMCGV 222
L V +D +++ D++ + AEEA ++D L+ A+ T+ +Y K V +
Sbjct: 118 LARVSPCDDGVVLFLEDLTERMAAEEALRRDHDLLHAVIESATDAIYVKDVSGRYILINP 177
Query: 223 VPA---------VVGIESAKVLGATK 239
A ++G A++LGA +
Sbjct: 178 ATASAFHRAPREILGRTDAELLGADR 203
gb|AAD36337.1|AE001781_8 (AE001781) phosphate ABC transporter, permease protein [Thermotoga
maritima]
Length = 275
Score = 31.3 bits (69), Expect = 9.2
Identities = 24/76 (31%), Positives = 35/76 (45%), Gaps = 6/76 (7%)
Query: 88 DAWETPYGVVEIDGELREKILKYPYANPDEYAHLYEHSLEVQLPFLQRYARREFKILPIV 147
+AW +VEI GEL I YP A+P EY L ++ L ++ L +
Sbjct: 23 EAWPA---LVEIGGELFTSIYWYPTADPPEYGML---AMIAGTLLLTAFSSAVLLPLGYL 76
Query: 148 VTFVEYEVAKDFGRFL 163
+ F + AKDF + L
Sbjct: 77 IAFFLHTYAKDFEKNL 92
gb|AAD29247.1|AF101064_1 (AF101064) intermediate filament macrolin [Hirudo medicinalis]
Length = 649
Score = 31.3 bits (69), Expect = 9.2
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Query: 4 REPAVAGTFYPKDKEELNKLMDLLCGFEPKEKIKPKAIL----VPHAGYIYSGKTACEVY 59
+E + + D EE ++ D L K +I+ +++ V S KT E
Sbjct: 145 KETSQVRAMFEADLEEARRIKDDLEKDTAKLEIRISSVIEALDVEKRRNATSEKTIIEYR 204
Query: 60 KRIEIPEK-VVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYPYANPDEY 118
++IE + +V L N+ L + + + GD ++ GEL+E + +Y + D
Sbjct: 205 EKIENQNRQLVDLQANNDLLQRRLELLEGDRDRDK----KLVGELKEAVTRYR-TDLDSQ 259
Query: 119 AHLY------EHSLEVQLPFLQRYARREFKILPIVV 148
LY SLE +L FL++ +E K L I++
Sbjct: 260 TLLYVDADNRRQSLEEELDFLKQVHEQEMKELNILI 295
emb|CAA10261| (AJ130956) annexin P38 [Capsicum annuum]
Length = 316
Score = 31.3 bits (69), Expect = 9.2
Identities = 26/90 (28%), Positives = 43/90 (46%), Gaps = 15/90 (16%)
Query: 188 EARKKDE---ILISAMERLNTEELYFKAV-----------QYNITMCGVVPAVVGIESAK 233
EA DE +L +A+E L T E YF+ V ++++T A V +E K
Sbjct: 221 EADDDDEYLKLLRAAIECLKTPEKYFEKVLRVAIKGLGTDEWDLTRVVATRAEVDMERIK 280
Query: 234 V-LGATKGIVVDYSNSGDTTGDYSQVVAYL 262
+ +D + +GDT+GDY +++ L
Sbjct: 281 EEYNKRNSVTLDRAITGDTSGDYERMLLAL 310
emb|CAB10575.1| (Z97348) predicted using hexExon; MAL3P1.10 (PFC0140c),
N-ethylmaleimide-sensitive fusion protein, len: 783 aa;
Similarity to a number of eukaryotic N-ethylmaleimide
sensitive fusion proteins (NSFs). Human NSF
(SW:NSF_MOUSE)....
Length = 783
Score = 31.3 bits (69), Expect = 9.2
Identities = 39/158 (24%), Positives = 65/158 (40%), Gaps = 20/158 (12%)
Query: 13 YPKDKEELNKLMDLLCG-FEPKEKIKPKAILVPHAGYIYSGKTACEVY---------KRI 62
Y K+ E + LL E K +IL+ G SGKT Y +
Sbjct: 542 YGKEYENIENTCKLLIKQIVDNENTKLMSILL--YGENGSGKTTISAYIAKCANFHFTKF 599
Query: 63 EIPEKVVLLGPNHTGLGKPISVYSGDAWETPYGVVEIDGELREKILKYPYANPDEYAHLY 122
PE L+G + G I+ DA++TP +V +D E+++ Y P
Sbjct: 600 ITPEN--LIGYSEIGRINYINKIFEDAYKTPLSLVILDNI--ERLIDYTRIGP----RFS 651
Query: 123 EHSLEVQLPFLQRYARREFKILPIVVTFVEYEVAKDFG 160
L+ + +++ ++E + + I+ T EY+ KD G
Sbjct: 652 NSILQAIMVLIKKKPKKENQKILIICTTSEYQFMKDVG 689
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.318 0.139 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76100948
Number of Sequences: 444417
Number of extensions: 3353661
Number of successful extensions: 9622
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9549
Number of HSP's gapped (non-prelim): 30
length of query: 267
length of database: 136,724,657
effective HSP length: 54
effective length of query: 213
effective length of database: 112,726,139
effective search space: 24010667607
effective search space used: 24010667607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)