Score E
Sequences producing significant alignments: (bits) Value
gi|2983622 (AE000726) hypothetical protein [Aquifex aeolicus] 1374 0.0
emb|CAB13199| (Z99110) similar to hypothetical proteins [Ba... 249 5e-65
dbj|BAA18497| (D90914) hypothetical protein [Synechocystis ... 237 2e-61
dbj|BAA10536| (D64003) hypothetical protein [Synechocystis ... 232 1e-59
emb|CAB37571| (AL035569) putative phosphodiesterase [Strept... 224 2e-57
dbj|BAA10080| (D63999) hypothetical protein [Synechocystis ... 222 6e-57
dbj|BAA16858| (D90901) nitrogen fixation positive activator... 220 3e-56
gi|2982789 (AE000670) hypothetical protein [Aquifex aeolicus] 217 2e-55
sp|P74101|YI95_SYNY3 HYPOTHETICAL 79.7 KD PROTEIN SLL1895 >... 215 1e-54
emb|CAB63177.1| (AL133469) hypothetical protein SCM10.16c [... 212 9e-54
gb|AAF11843.1|AE002061_10 (AE002061) GGDEF family protein [... 207 2e-52
dbj|BAA17412| (D90905) hypothetical protein [Synechocystis ... 198 2e-49
gi|2983839 (AE000740) hypothetical protein [Aquifex aeolicus] 197 4e-49
sp|Q11024|YD54_MYCTU HYPOTHETICAL 67.7 KD PROTEIN RV1354C >... 196 5e-49
sp|P77334|YCIR_ECOLI HYPOTHETICAL 74.7 KD PROTEIN IN OSMB-R... 194 2e-48
sp|P55552|Y4LL_RHISN HYPOTHETICAL 91.8 KD PROTEIN Y4LL >gi|... 188 1e-46
gi|3659614 (AF052517) c-di-GMP phosphodiesterase A [Acetoba... 185 2e-45
gb|AAF10046.1|AE001906_2 (AE001906) sensory box/GGDEF famil... 183 5e-45
gi|3659621 (AF052519) c-di-GMP phosphodiesterase A [Acetoba... 183 6e-45
gi|2983047 (AE000686) hypothetical protein [Aquifex aeolicus] 182 1e-44
gi|1787765 (AE000246) putative enzyme [Escherichia coli] 181 2e-44
sp|P76129|YDDU_ECOLI HYPOTHETICAL 90.3 KD PROTEIN IN OSMC-G... 181 2e-44
dbj|BAA15144| (D90789) Sensor protein FixL (EC 2.7.3.-). [E... 181 2e-44
gi|3659618 (AF052518) c-di-GMP phosphodiesterase A [Acetoba... 173 7e-42
dbj|BAA16762| (D90900) hypothetical protein [Synechocystis ... 166 5e-40
dbj|BAA16761| (D90900) hypothetical protein [Synechocystis ... 166 7e-40
gb|AAF11189.1|AE002006_2 (AE002006) c-di-GMP phosphodiester... 162 1e-38
gi|1000118 (U32936) orf 421 [Synechocystis PCC6803] >gi|165... 160 5e-38
emb|CAB37587| (AL035569) putative membrane associated phoph... 157 4e-37
dbj|BAA18387| (D90913) hypothetical protein [Synechocystis ... 154 3e-36
gi|3128306 (AF010496) potential nitrogen fixation positive ... 153 5e-36
dbj|BAA16989| (D90902) hypothetical protein [Synechocystis ... 153 5e-36
dbj|BAA16763| (D90900) hypothetical protein [Synechocystis ... 148 2e-34
gi|2944145 (U80214) Urf2 [Pseudomonas stutzeri] 146 5e-34
emb|CAA77326| (Z00027) orf-2 [Pseudomonas aeruginosa] 146 5e-34
gi|3659619 (AF052518) diguanylate cyclase [Acetobacter xyli... 140 4e-32
sp|Q04855|YNTC_AZOCA HYPOTHETICAL 80.5 KD PROTEIN IN NTRC 5... 138 1e-31
sp|P37649|YHJK_ECOLI HYPOTHETICAL 73.1 KD PROTEIN IN DCTA-D... 137 4e-31
sp|P32701|YJCC_ECOLI HYPOTHETICAL 60.8 KD PROTEIN IN SSB-SO... 134 2e-30
gi|396396 (U00006) similar to Azorhizobium caulinodans hypo... 134 2e-30
gb|AAF10326.1|AE001930_7 (AE001930) sensory box/GGDEF famil... 134 3e-30
gi|2655361 (AF034831) ORF1 [Rhizobium etli] 129 1e-28
dbj|BAA78792.1| (AP000342) 99% identical to gp:ECOMERTET_4[... 125 1e-27
gb|AAC33923.1| (AF071413) unknown [Escherichia coli] 125 1e-27
pir||B29503 hypothetical protein (mercuric resistance opero... 125 1e-27
gi|460275 (L29404) URF2; putative [Escherichia coli] 125 2e-27
gi|3659615 (AF052517) diguanylate cyclase [Acetobacter xyli... 124 3e-27
dbj|BAA10527| (D64003) hypothetical protein [Synechocystis ... 121 2e-26
gi|2688273 (AE001142) periplasmic protein [Borrelia burgdor... 115 1e-24
gi|3123891 (AF031552) response regulator [Vibrio cholerae] 114 3e-24
sp|P77473|YLAB_ECOLI HYPOTHETICAL 58.9 KD PROTEIN IN TESB-H... 113 8e-24
pir||I40240 22K antigen - Lyme disease spirochete >gi|40910... 111 2e-23
gi|1788849 (AE000336) putative cytochrome C-type biogenesis... 109 7e-23
emb|CAA63741.1| (X93358) ORFx [Sinorhizobium meliloti] 109 9e-23
gi|1787055 (AE000185) orf, hypothetical protein [Escherichi... 109 1e-22
sp|Q11027|YD57_MYCTU HYPOTHETICAL 33.9 KD PROTEIN RV1357C >... 108 1e-22
gb|AAD36851.1|AE001816_8 (AE001816) conserved hypothetical ... 104 2e-21
sp|P21514|YAHA_ECOLI HYPOTHETICAL 40.7 KD PROTEIN IN BETT-P... 98 2e-19
gb|AAB18041.1| (U73857) hypothetical protein [Escherichia c... 98 2e-19
sp|P76446|RTN_ECOLI RTN PROTEIN >gi|1736841|dbj|BAA15984| (... 97 5e-19
dbj|BAA36017| (D90752) Hypothetical 60.8 kd protein in ssb-... 96 1e-18
gi|1787415 (AE000215) putative proteases [Escherichia coli]... 96 1e-18
gi|3659622 (AF052519) diguanylate cyclase [Acetobacter xyli... 96 1e-18
gi|2982791 (AE000670) hypothetical protein [Aquifex aeolicus] 96 1e-18
gb|AAF12474.1|AE001863_99 (AE001863) GGDEF family protein [... 94 3e-18
gb|AAD36259.1|AE001775_2 (AE001775) pleD-related protein [T... 93 7e-18
dbj|BAA10669| (D64005) PleD gene product [Synechocystis sp.] 92 1e-17
emb|CAA14708| (AJ235271) unknown [Rickettsia prowazekii] 91 4e-17
dbj|BAA16267| (D90869) similar to [SwissProt Accession Numb... 89 1e-16
gi|1788739 (AE000327) orf, hypothetical protein [Escherichi... 89 1e-16
gi|2983024 (AE000684) hypothetical protein [Aquifex aeolicus] 88 2e-16
gi|558809 (U12780) rtn [Proteus vulgaris] 87 5e-16
emb|CAB61441.1| (X97478) ORF4; c-terminus of a putative reg... 87 7e-16
emb|CAA09331| (AJ010739) hypothetical protein [Clostridium ... 87 7e-16
gi|1788118 (AE000276) orf, hypothetical protein [Escherichi... 86 1e-15
dbj|BAA15627| (D90826) ORF_ID:o334#7; similar to [SwissProt... 86 1e-15
dbj|BAA15622| (D90825) ORF_ID:o334#7; similar to [SwissProt... 86 1e-15
gi|2983209 (AE000696) hypothetical protein [Aquifex aeolicus] 85 2e-15
gi|2983095 (AE000689) putative protein [Aquifex aeolicus] 85 2e-15
emb|CAA14699| (AJ235271) unknown [Rickettsia prowazekii] 83 6e-15
gi|2293226 (AF008220) YtrP [Bacillus subtilis] >gi|2635449|... 83 6e-15
gi|2983853 (AE000741) hypothetical protein [Aquifex aeolicus] 81 4e-14
dbj|BAA18288| (D90913) hypothetical protein [Synechocystis ... 81 4e-14
gi|2982831 (AE000672) hypothetical protein [Aquifex aeolicus] 80 5e-14
gi|2982975 (AE000681) hypothetical protein [Aquifex aeolicus] 79 2e-13
pir||S72834 B1620_F2_68 protein - Mycobacterium leprae >gi|... 79 2e-13
dbj|BAA16805| (D90900) regulatory components of sensory tra... 78 2e-13
sp|P38097|YEGE_ECOLI HYPOTHETICAL 123.9 KD PROTEIN IN UDK-A... 78 3e-13
emb|CAA13126| (AJ231084) z12r [Vibrio cholerae] 77 6e-13
dbj|BAA17760| (D90908) sensory transduction histidine kinas... 76 8e-13
pir||E29010 mer operon ORF2 hypothetical protein - Serratia... 76 8e-13
emb|CAA71354| (Y10305) orf [Calothrix PCC7601] 76 1e-12
dbj|BAA15155| (D90790) ORF_ID:o279#8; similar to [SwissProt... 75 2e-12
emb|CAA86829| (Z46806) YntC [Rhodobacter sphaeroides] 74 5e-12
emb|CAB11337| (Z98604) hypothetical protein MLCB2052.39 [My... 74 5e-12
gb|AAD36239.1|AE001773_8 (AE001773) conserved hypothetical ... 73 7e-12
dbj|BAA35810| (D90740) Hypothetical 24.0K protein [Escheric... 73 7e-12
sp|P75908|YCDT_ECOLI HYPOTHETICAL 51.8 KD PROTEIN IN PHOH-C... 73 7e-12
sp|P76236|YEAI_ECOLI HYPOTHETICAL 56.1 KD PROTEIN IN GAPA-R... 73 7e-12
gi|1336656 (U58859) Orf1 [Bacillus subtilis] 72 2e-11
gi|2983622 (AE000726) hypothetical protein [Aquifex aeolicus]
Length = 814
Score = 1374 bits (3518), Expect = 0.0
Identities = 717/814 (88%), Positives = 717/814 (88%)
Query: 1 MEGRNYDLNSLRKLADFIEKDVEHVELIRQVLKDEELKEVARRFAEYLKSYRDFXXXXXX 60
MEGRNYDLNSLRKLADFIEKDVEHVELIRQVLKDEELKEVARRFAEYLKSYRDF
Sbjct: 1 MEGRNYDLNSLRKLADFIEKDVEHVELIRQVLKDEELKEVARRFAEYLKSYRDFKGKEKE 60
Query: 61 XXXXXXXHLRGLIDLKEGLKEREELANFISKFNVTPEEVVAEHGKLFELIREKLKDKFSP 120
HLRGLIDLKEGLKEREELANFISKFNVTPEEVVAEHGKLFELIREKLKDKFSP
Sbjct: 61 VEEVVYKHLRGLIDLKEGLKEREELANFISKFNVTPEEVVAEHGKLFELIREKLKDKFSP 120
Query: 121 EQLNEICLSLAKITLIHISLLIDQMRKKGTETXXXXXXXXXXXXXXXXSNFKINFINKTG 180
EQLNEICLSLAKITLIHISLLIDQMRKKGTET SNFKINFINKTG
Sbjct: 121 EQLNEICLSLAKITLIHISLLIDQMRKKGTETLRLLLDNLPDVVVVLDSNFKINFINKTG 180
Query: 181 EEKLKFKREEVVGKPFTELLPERYRGVYRLLCELCKMKGSGTLPEVVYLGNPKLAILKPF 240
EEKLKFKREEVVGKPFTELLPERYRGVYRLLCELCKMKGSGTLPEVVYLGNPKLAILKPF
Sbjct: 181 EEKLKFKREEVVGKPFTELLPERYRGVYRLLCELCKMKGSGTLPEVVYLGNPKLAILKPF 240
Query: 241 EVSYQTLSVNGETFFIIDLRDVSEEVKKERERQRISRLYSLFTHLXXXXXXXXXXXXXXX 300
EVSYQTLSVNGETFFIIDLRDVSEEVKKERERQRISRLYSLFTHL
Sbjct: 241 EVSYQTLSVNGETFFIIDLRDVSEEVKKERERQRISRLYSLFTHLIKIIFEETEKEEIFR 300
Query: 301 XXADFLVDEENFTYAEITLDGHTIIKKGKMGEYSVCFKLKSKEKYYLTLSKEEEFYPAEV 360
ADFLVDEENFTYAEITLDGHTIIKKGKMGEYSVCFKLKSKEKYYLTLSKEEEFYPAEV
Sbjct: 301 KIADFLVDEENFTYAEITLDGHTIIKKGKMGEYSVCFKLKSKEKYYLTLSKEEEFYPAEV 360
Query: 361 QLIINFLEELSTAIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVV 420
QLIINFLEELSTAIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVV
Sbjct: 361 QLIINFLEELSTAIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVV 420
Query: 421 VVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVP 480
VVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVP
Sbjct: 421 VVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVP 480
Query: 481 VAVNSFLARLNKLFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKL 540
VAVNSFLARLNKLFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKL
Sbjct: 481 VAVNSFLARLNKLFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKL 540
Query: 541 GGNRVVYYSSXXXXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWK 600
GGNRVVYYSS FILFYQPKIDLKEKKIVGCEALIRWK
Sbjct: 541 GGNRVVYYSSKEFPKIEEIITKKKELLEAIKKDEFILFYQPKIDLKEKKIVGCEALIRWK 600
Query: 601 KGDKLVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSG 660
KGDKLVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSG
Sbjct: 601 KGDKLVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSG 660
Query: 661 EFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYS 720
EFLQSFLKD TETALVENVSVATLFLKSLSELGIRVYIDDFGTGYS
Sbjct: 661 EFLQSFLKDLEGYTELLYYLGVEVTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYS 720
Query: 721 SILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKM 780
SILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKM
Sbjct: 721 SILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKM 780
Query: 781 LMELSCDYAQGYYYSXXXXXXXXXXXXRKFNGLK 814
LMELSCDYAQGYYYS RKFNGLK
Sbjct: 781 LMELSCDYAQGYYYSPPLPPEEFEEFFRKFNGLK 814
emb|CAB13199| (Z99110) similar to hypothetical proteins [Bacillus subtilis]
>gi|2633713|emb|CAB13215| (Z99111) similar to
hypothetical proteins [Bacillus subtilis]
Length = 749
Score = 249 bits (630), Expect = 5e-65
Identities = 151/474 (31%), Positives = 244/474 (50%), Gaps = 7/474 (1%)
Query: 325 IKKGKMGEYSVCFKLKSKEKYYLTLSKEEEFYPAEVQLIINFLEELSTAIDA-ITAHEKL 383
+KK K S + K +++L ++ P EV ++ + + + A +++
Sbjct: 262 VKKDKQAMNSDSDLITEKGQFHLNIT----LIPVEVNQELDSIYVICKDMTKQYKAEKEI 317
Query: 384 EKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDK 443
++ +D LT LP R + L+ L+ VV LD++ F IN G VGD+
Sbjct: 318 HRMAHYDSLTDLPNRRHAISHLTKVLNREHSLHYNTVVFFLDLNRFKVINDALGHNVGDQ 377
Query: 444 VLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLAR-LNKLFSKPVIVNG 502
+L A L V +ARLG D F + LT A+ LAR + + F KP +
Sbjct: 378 LLQFAAKRLSSVVPDNGFIARLGGDEFIIILTDANTGTGEADVLARKIIQKFKKPFKIQD 437
Query: 503 KEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXX 562
+ + SIGI++ P DG + +L+ A AM+ AK+ ++ YYS
Sbjct: 438 HTLVTSVSIGIAISPKDGTDGLELMKKADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQ 497
Query: 563 XXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGD-KLVPPYEFIPLLEETGLM 621
F+L YQP+ +K++K+ G EALIR D +L PP EFI + EETGL+
Sbjct: 498 EMVLREAIENDRFVLHYQPQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLI 557
Query: 622 NEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXX 681
++G ++++AC+Q + WH KG ++ +AINIS QF+S + +
Sbjct: 558 IDIGKWIIDEACKQARIWHDKGYDLSVAINISARQFQSKDLIPLIKDTLNKYQLPPQLLE 617
Query: 682 XXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVK 741
TE+ ++N++ + L SL+ELGIR+ IDDFGTG+SS+ +LK P+ LKID F+
Sbjct: 618 VEVTESMTMDNLNHSKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFID 677
Query: 742 DMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
D+ + + +I +I + H L L+ +AEGVE +++L E CD+ QG+++S
Sbjct: 678 DIQTHPKSEQITGAIIAMGHQLSLQVIAEGVENAAQKQLLFEKGCDHLQGFFFS 731
dbj|BAA18497| (D90914) hypothetical protein [Synechocystis sp.]
Length = 1578
Score = 237 bits (599), Expect = 2e-61
Identities = 151/477 (31%), Positives = 242/477 (50%), Gaps = 12/477 (2%)
Query: 327 KGKMGEYSVCFKLKSKE---KYYLTLSKEEEFYPAEVQLIINFLEELSTAIDAITAHEKL 383
+GK+ Y+V + ++ K+ L+L K E+ L L L+ + A ++
Sbjct: 1089 QGKIPRYAVECRQRTMAGQWKWLLSLGKIVEWDSQGKPL--RMLGILTDVTERKQAEAQI 1146
Query: 384 EKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDK 443
E + ++D LT LP R + + L++A + + +V++D+D F +N G + GD+
Sbjct: 1147 ENLAYYDPLTALPNRRLLLDRAENALALAQRSKHFGAIVLIDLDGFKTLNDARGHDSGDR 1206
Query: 444 VLIEVADSLRDSVRIGDILARLGADTFGVALT--CADVPVAVNSFLA---RLNKLFSKPV 498
+L VA L DS+R D +ARLG D F V L D +A L ++ + + P
Sbjct: 1207 LLQMVAKRLADSLRDSDTVARLGGDEFIVLLPELAHDRELAARLGLGVGEKIRQALATPF 1266
Query: 499 IVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXX 558
+ +++Q++ SIGI++FP + L A AM++AKK G ++V + S
Sbjct: 1267 TLEAEQVQISGSIGITLFPKLNEKVSDLFKEADTAMYQAKKAGRDKVCLFESQMQLEVES 1326
Query: 559 XXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKK-GDKLVPPYEFIPLLEE 617
F ++ QP++D +G EAL+RW G +PP FIP+ EE
Sbjct: 1327 RFALEADLRSALEQKQFQVYLQPQVD-SHGVWIGAEALLRWNHPGRGFIPPNIFIPIAEE 1385
Query: 618 TGLMNEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXX 677
GL+ +G VLE+ C+ L + G+ + IAIN+SP QFR F +
Sbjct: 1386 IGLIGGIGDFVLEQVCQYLARLQQLGLTLRIAINVSPRQFRQANFAKEIKNLLACTGVDP 1445
Query: 678 XXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDV 737
TE +VE+ A + L LGI +DDFGTGYSS+ +LK+LP++ LKID
Sbjct: 1446 YRLTLEVTEGLIVEDTHQAIATMFELQTLGIHFSVDDFGTGYSSLSYLKRLPLNELKIDR 1505
Query: 738 EFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYY 794
FV+D + + +V+ +I++A + L VAEGVE E + L +L C++ QGY+Y
Sbjct: 1506 AFVQDAPQDLNNAALVEAIISVARTFNLAIVAEGVETEEQVQFLAQLGCNFYQGYFY 1562
dbj|BAA10536| (D64003) hypothetical protein [Synechocystis sp.]
Length = 1276
Score = 232 bits (585), Expect = 1e-59
Identities = 148/411 (36%), Positives = 214/411 (52%), Gaps = 6/411 (1%)
Query: 389 FDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEV 448
+D LT+LP I F + L+ L A E K V V+V+ +D F IN +G + GD +L EV
Sbjct: 433 YDPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESFGHKTGDGLLQEV 492
Query: 449 ADSLRDSVR----IGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGKE 504
AD L + +L+R D F + LT + RL F +P + G+
Sbjct: 493 ADRLNQKLSPLAAYSPLLSRWHGDGFTILLTQISDNQEMIPLCERLLSTFQEPFFLQGQP 552
Query: 505 IQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXX 564
I +T S+GIS P DG AE LL +A A+ AK G N +Y
Sbjct: 553 IYLTASMGISTAPYDGETAESLLKFAEIALTRAKCQGKNTYQFYRPQDSAPMLDRLTLES 612
Query: 565 XXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNE 623
F+L++QP++ L K++G EAL+RW+ V P FIPL EE GL+N
Sbjct: 613 DLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQVAPDVFIPLAEELGLINH 672
Query: 624 VGLIVLEKACRQLKEWHKK-GIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXX 682
+G VLE AC + + ++ G + +A+NIS QF+ ++L S L+
Sbjct: 673 LGQWVLETACATHQHFFRETGRRLRMAVNISARQFQDEKWLNSVLECLKRTGMPPEDLEL 732
Query: 683 XXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKD 742
TE+ ++E++ + L L E G++V IDDFGTGYSS+ LKQLP+ LKID FV D
Sbjct: 733 EITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSILKQLPIHRLKIDKSFVND 792
Query: 743 MDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYY 793
+ D I++ VI+LA+ L L+TVAEG+E E + L ++ C QGY+
Sbjct: 793 LLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKMGCHLGQGYF 843
Score = 67.9 bits (163), Expect = 3e-10
Identities = 56/201 (27%), Positives = 102/201 (49%), Gaps = 12/201 (5%)
Query: 359 EVQLIINFLEELSTAI-------DAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSI 411
++QL++ +++ AI TA+ +L++I D LT++ R F L
Sbjct: 1065 DLQLLMELATQVAIAIHQGELYEQLETANIRLQQISSLDALTQVGNRYLFDSTLEREWQR 1124
Query: 412 AAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVADSL-RDSVRIGDILARLGADTF 470
+ R+ + +++ D+D F N YG GD+ L ++AD++ + + R D++AR G + F
Sbjct: 1125 LQRIREPLALLLCDVDFFKGFNDNYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEF 1184
Query: 471 GVALTCADVPVAVNSFLARLNKL--FSKPVIVNGKEIQVTFSIGISVF-PDDGNEAEKLL 527
+ L+ + A+N A ++ + P V+G VT SIGI+V+ P+ L+
Sbjct: 1185 AIILSETSLEGAINVTEALQVEVANLAIPHTVSGTG-HVTLSIGIAVYTPERHINPNALV 1243
Query: 528 GYALQAMFEAKKLGGNRVVYY 548
A A++EAK G N+ + Y
Sbjct: 1244 KAADLALYEAKAKGRNQWLAY 1264
emb|CAB37571| (AL035569) putative phosphodiesterase [Streptomyces coelicolor]
Length = 746
Score = 224 bits (565), Expect = 2e-57
Identities = 139/404 (34%), Positives = 209/404 (51%), Gaps = 3/404 (0%)
Query: 390 DKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVA 449
D LT LP R + ++ L A + + ++++D+D F ++N G GD++L++ A
Sbjct: 308 DPLTGLPNRQWLLERTWTALDDAERIGARAALMLIDLDRFRSVNDTLGHLAGDRLLLQTA 367
Query: 450 DSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGKEIQVTF 509
D LR ++ G ARLG D F V L AD + L S P+ ++G + +
Sbjct: 368 DRLRQALPRGAEAARLGGDEFAVLLPVADSTTSATRIARSLVGALSSPMDLDGLTLVLEA 427
Query: 510 SIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXXX 569
S G++VFPD +AE LL A AM++AK+ V Y S
Sbjct: 428 SAGVAVFPDHALDAEGLLRRADVAMYQAKR-DRTGVEVYESKRDSNTPDRLGLLGDLRRA 486
Query: 570 XXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIV 628
L YQPK+ + ++ G EAL+RW ++ VPP EFI + E +GLM + V
Sbjct: 487 LDAHEVQLHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTEYV 545
Query: 629 LEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETA 688
LE A Q+ W +G+ + +A+N+SP + F S TE
Sbjct: 546 LETALGQVARWRAQGLFVPVAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEITEHV 605
Query: 689 LVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNER 748
L+E+ A L +L+ G+++ +DDFGTGYSS++HL++LPVS LKID FV + ++
Sbjct: 606 LLEDPQRAADTLNALTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLAIDNE 665
Query: 749 DYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGY 792
D EIV+ ++LAHSLGL VAEGVE + + L +L CD QG+
Sbjct: 666 DAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGW 709
dbj|BAA10080| (D63999) hypothetical protein [Synechocystis sp.]
Length = 1244
Score = 222 bits (561), Expect = 6e-57
Identities = 141/422 (33%), Positives = 215/422 (50%), Gaps = 5/422 (1%)
Query: 379 AHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERK-KVVVVVLDIDNFTAINTLYG 437
A EKL D LT LP R F+ L L + R + V+ LD+D F IN G
Sbjct: 787 AAEKLHYNANHDSLTNLPNRSMFLDRLGHALQRNLRRRDLRFAVLFLDLDGFKIINDSLG 846
Query: 438 TEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKP 497
GD +L +A LR +R D LARLG D F + + P V + R+++ KP
Sbjct: 847 HSCGDLLLQGIAHRLRQCLRPEDTLARLGGDEFTMLIENITCPEDVIAVAQRIHQELQKP 906
Query: 498 VIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXX 557
+NG+EI SIGI++ + +L A AM+ AK G R ++
Sbjct: 907 FNLNGQEIFTNTSIGIALNHPHYGHPQDVLRDADTAMYRAKAAGKGRYAIFNQTMHHHAV 966
Query: 558 XXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLE 616
L YQP + LK ++ G EAL+RW+ ++ L+ P EF+ + E
Sbjct: 967 QRLQRENDLRRAIDRQELQLHYQPIVCLKTGQLQGVEALVRWQHPEEGLILPEEFVAIAE 1026
Query: 617 ETGLMNEVGLIVLEKACRQ---LKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXX 673
ETGL+ +G +L +A RQ LK+ + ++++IN+S Q R L++ +
Sbjct: 1027 ETGLIVPMGDWILWEASRQILELKQSFPQLSHLQVSINVSSRQLRDQRLLKTVDEILSST 1086
Query: 674 XXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSAL 733
TE+ L++N+++A LKSL + I++ +DDFGTGYSS+ +L + P++ +
Sbjct: 1087 NLAPQDLKLEITESLLIDNLNLAADVLKSLRQRNIQISLDDFGTGYSSLSYLHRFPINTI 1146
Query: 734 KIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYY 793
K+D FV M+ N ++ IV ++ LAH+LGL +AEG+E E H L L CD QGYY
Sbjct: 1147 KVDRSFVNTMEPNNQNTAIVHTIVTLAHTLGLDVIAEGIETERHLTQLHWLGCDAGQGYY 1206
Query: 794 YS 795
++
Sbjct: 1207 FA 1208
dbj|BAA16858| (D90901) nitrogen fixation positive activator protein
[Synechocystis sp.]
Length = 840
Score = 220 bits (555), Expect = 3e-56
Identities = 140/413 (33%), Positives = 210/413 (49%), Gaps = 9/413 (2%)
Query: 389 FDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEV 448
+D LT LP RI L + A +++ ++ LD+DNF +N G + GD++L+EV
Sbjct: 412 YDHLTGLPNRILAKDRLQQAIESALRQKHIFGLMFLDLDNFKKVNDTLGHDAGDQLLVEV 471
Query: 449 ADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGKEIQVT 508
++ L+ ++R D +ARLG D F + L + + RL ++ +PV + G E V
Sbjct: 472 SERLQRALRQTDTVARLGGDEFLIILDQVSHSRKLMAIAQRLLRVMRQPVNLQGLEFFVH 531
Query: 509 FSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXX 568
SIGI+VFPDDG A+ LL A AM+ AK G N +++
Sbjct: 532 GSIGITVFPDDGFHADVLLRNADTAMYAAKLAGRNMFRFFTPHMNQAAQQRMAIESELRQ 591
Query: 569 XXXXXXFILFYQPKIDLKEKKIVGCEALIRW-KKGDKLVPPYEFIPLLEETGLMNEVGLI 627
F + YQP + L+ +IVG EAL+RW + VPP +FIP+ EE GL+ E+G
Sbjct: 592 GLSRQEFQILYQPIVSLESGQIVGAEALMRWHNRLLGTVPPDQFIPIAEEVGLIVELGEW 651
Query: 628 VLEKACRQLKEWHKKGIE--IEIAINISPAQFRSGEF---LQSFLKDXXXXXXXXXXXXX 682
+L+ C Q WH E +++N+SP Q + F LQ FL+
Sbjct: 652 LLDNVCCQAAHWHSALGEQTFWVSVNVSPRQLKDSYFVAILQGFLQ---RYQVRPEWLEL 708
Query: 683 XXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKD 742
TE ++E L L E I + +DDFGTGYSS+ +L++ ++LKID FV+
Sbjct: 709 EITENLILEENGDLLKNLSDLEEENIALSLDDFGTGYSSLNYLRKFNFNSLKIDRSFVEL 768
Query: 743 MDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
+ + +V+ +I +AH L LK +AEG+E L CDY QGY +S
Sbjct: 769 LPHDNNTVGLVRAIIAMAHHLELKVIAEGIETPEQWNFLRLQGCDYGQGYLFS 821
gi|2982789 (AE000670) hypothetical protein [Aquifex aeolicus]
Length = 592
Score = 217 bits (548), Expect = 2e-55
Identities = 156/474 (32%), Positives = 238/474 (49%), Gaps = 23/474 (4%)
Query: 323 TIIKKGKMGEYSVCFKLKSKEKYYLTLSKEEEFYPAEVQLIINFLEELSTAIDAITAHEK 382
T I+K K EY++ K K E Y+ L E ++I F + + I +K
Sbjct: 120 TCIEKPK--EYTLKLKTKKGEDKYVRLYIISFKKDEECIVLILFTD----VTNEILLRKK 173
Query: 383 LEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGD 442
+ + FFD+LT LP R F+ L + I +E + V +L++ NF IN L+G + GD
Sbjct: 174 VYYLAFFDQLTGLPNRHLFIMLL--QRFIHDEETNNLHVCMLNLKNFGEINFLFGFDKGD 231
Query: 443 KVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNG 502
++L E+A+ LR V+ G ARL FG+AL + V + KL + V
Sbjct: 232 EILKEIANRLRTLVKEG-AAARLSGKAFGIALRNKEREEVVEL----VEKLSKEKV---- 282
Query: 503 KEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXX 562
+ + GIS +P DG ++LL A A+ AK N V +Y
Sbjct: 283 DSVDLNIKAGISSYPQDGENPKELLEKAELALLFAK----NTVNFYKKEYEEKLKKELRI 338
Query: 563 XXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLM 621
F + YQP + LK+ + VG EAL+RW + VPP F+P+ E+ GL+
Sbjct: 339 KEFLEESIEKKEFGVVYQPIVSLKDFRPVGAEALVRWYHPELGEVPPSIFVPVAEKYGLV 398
Query: 622 NEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXX 681
+++ IV+EKA R+L ++ K+ E ++IN++ QF S E +Q ++
Sbjct: 399 SQINYIVMEKAFRELSDFVKER-EFYLSINVNAEQFYSVELIQKLIEFEEKFKFPLRNVI 457
Query: 682 XXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVK 741
TE AL+ A L L +LG+++ IDDFGTGYSS+ +L + V +KID F+
Sbjct: 458 LELTERALMAKSEKAVEILSELKKLGVKIAIDDFGTGYSSMHYLVEFDVDEIKIDKSFID 517
Query: 742 DMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
M N +++V+ +I L H+L +AEGVE E + L +L CD AQGYY+S
Sbjct: 518 KMLENVNAWQVVRNIIELTHNLNALALAEGVENEEQIRELKKLLCDEAQGYYFS 571
sp|P74101|YI95_SYNY3 HYPOTHETICAL 79.7 KD PROTEIN SLL1895 >gi|1653272|dbj|BAA18187|
(D90912) hypothetical protein [Synechocystis sp.]
Length = 696
Score = 215 bits (541), Expect = 1e-54
Identities = 136/455 (29%), Positives = 221/455 (47%), Gaps = 9/455 (1%)
Query: 343 EKYYLTLSKEEEFYPAEVQLIINFLEELSTAIDAITAHEKLEKIEFFDKLTRLPTRIFFV 402
+K+Y ++ YPAE Q I +++ +++ + + + F+D LT LP R F
Sbjct: 226 DKFY----EQHIHYPAESQFIRSYIFDIT---ERKVIEQSIHYQAFYDPLTDLPNRFLFK 278
Query: 403 KALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDIL 462
+ L LS + + +V+L ++N L G V D+VL + + L VR+ D+L
Sbjct: 279 QELGKVLSNVQNQSSVLGLVLLGFRELQSLNDLLGHSVADEVLKIITERLSAHVRLEDLL 338
Query: 463 ARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGKEIQVTFSIGISVFPDDGNE 522
R DTF + + + F+ RL + +P + + + GI+ +P+ G+
Sbjct: 339 CRWRGDTFILLIQSCRNLDEIEVFVRRLLAVLKRPFFIANNPLYLQGYAGIACYPNHGDN 398
Query: 523 AEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXXXXXXXXFILFYQPK 582
E LL A+ E K +G + +Y F+L+YQP
Sbjct: 399 VEILLNRVGIALNEVKDIGSRQYCFYEESMNSDHLERIQLEHALHQALERDEFLLYYQPI 458
Query: 583 IDLKEKKIVGCEALIRWKKG-DKLVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHK 641
ID++ ++ G EALIRW+ LV P FI LLE TGL+ VG ++ A + W
Sbjct: 459 IDVQSGRLCGVEALIRWQHPIHGLVSPGLFIGLLETTGLIIPVGEWIMRTAFQHFHHWAP 518
Query: 642 K-GIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVATLFL 700
+ IAIN+SP QF++ + L + L+ TE +++NV+ L
Sbjct: 519 AVDDDFRIAINLSPQQFQAPDLLPTILRILAESSLPPHRLEVEITENIVMQNVTATQNLL 578
Query: 701 KSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLA 760
+L GIR+ +DDFGTGYSS+ +LK P + LKID F KD+ +D I++ ++ L
Sbjct: 579 NALQSHGIRLSMDDFGTGYSSLSYLKTFPFNTLKIDRSFTKDILHTPKDAAIIQAMLLLG 638
Query: 761 HSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
+ L +AEG+E+E + L +L C QGY++S
Sbjct: 639 NGFNLNIIAEGIEEEPQARCLYDLGCREMQGYWFS 673
emb|CAB63177.1| (AL133469) hypothetical protein SCM10.16c [Streptomyces coelicolor
A3(2)]
Length = 714
Score = 212 bits (534), Expect = 9e-54
Identities = 139/417 (33%), Positives = 203/417 (48%), Gaps = 13/417 (3%)
Query: 390 DKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVA 449
D LT LP R FF + L L+ +R + LD+D F +N G GD++L+EVA
Sbjct: 282 DALTGLPNRSFFFERLEKALNAGPGQR--FGLCYLDLDGFKTVNDSLGHAAGDRLLVEVA 339
Query: 450 DSLRDSVRI-GDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGKEIQVT 508
D L+ G+++ARLG D F T D V+ R+ PV V+G+E+ V
Sbjct: 340 DRLQACATAPGEMVARLGGDEFVALTTGPDTRREVDELAGRIMNALLAPVSVDGRELTVR 399
Query: 509 FSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXX 568
SIGI P ++L A M+ AK GGNR
Sbjct: 400 GSIGIVEGPAGERSPAEVLRSADITMYRAKSAGGNRFELADPEADARVITRHGLTTALPA 459
Query: 569 XXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLI 627
F + YQP + L + + G EAL+RW ++ P FIPL E TGL+ +G
Sbjct: 460 ALERGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLGPDRFIPLAEHTGLIVPLGRW 519
Query: 628 VLEKACRQLKEWHKKGIE------IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXX 681
VLE++ RQ + W ++ E + I +N+SP Q +Q ++
Sbjct: 520 VLEQSVRQARVWRERYGESGAAGPLRINVNLSPCQLTHPGLVQDTVEILERTGVAPDALC 579
Query: 682 XXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVK 741
TE+AL+ L+ L+E+G+ + +DDFGTGYS++ +L++LPVS LK+D F +
Sbjct: 580 LEVTESALIGADDDLLKPLRRLAEMGVDIALDDFGTGYSNLANLRRLPVSVLKLDRSFTQ 639
Query: 742 DMD---VNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
M + D +IV+G++ LAHSL L EGVE + L L CD AQG+YY+
Sbjct: 640 SMQQFPADPVDLKIVEGIVALAHSLDLAVTVEGVETGAQAEQLRILGCDTAQGWYYA 696
gb|AAF11843.1|AE002061_10 (AE002061) GGDEF family protein [Deinococcus radiodurans]
Length = 856
Score = 207 bits (522), Expect = 2e-52
Identities = 134/411 (32%), Positives = 205/411 (49%), Gaps = 10/411 (2%)
Query: 390 DKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVA 449
D+LT L R FF L + A R + ++V DID+ AIN +G VGD ++ E+A
Sbjct: 404 DQLTGLANRSFFYTRARQALDLLAPGRS-LGLIVADIDHLKAINDRFGYAVGDLLITELA 462
Query: 450 DSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGKEIQVTF 509
L ++VR GD++ RL D F + L+ P + RL + +P + + + T
Sbjct: 463 RRLCEAVRPGDLVGRLSGDEFVMLLSDLASPGDLRLVAERLLQQLREPCVCGTELVVPTV 522
Query: 510 SIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXXX 569
S+G V P DG + E L A A+F+AK G N V ++
Sbjct: 523 SLGYVVAPQDGGDVELLQKRADLALFQAKAQGRNMAVAFAGDMSAEEEERRMLSQDLRHA 582
Query: 570 XXXXXFILFYQPKIDLKEKKIVGCEALIRW---KKGDKLVPPYEFIPLLEETGLMNEVGL 626
L YQ L +++ G EAL+RW K+G ++PP FI L EE+ L+ E+G
Sbjct: 583 VRHGQLQLHYQGIFLLPGQRLSGFEALVRWPHPKRG--MIPPDRFIALAEESRLILELGR 640
Query: 627 IVLEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTE 686
VL++ACRQ + W + +A+N+S QF +F+ TE
Sbjct: 641 WVLDEACRQARAWQLPERGLTMAVNVSALQFEQSDFVAGVRACLEQHGLPGHSLVLELTE 700
Query: 687 TALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVN 746
+ + + +A L+ L LG++V +DDFGTGYSS+ LK LP LKID EF++D+
Sbjct: 701 SMVHRDPRLAKQTLRELQALGVKVAMDDFGTGYSSLSMLKSLPFGLLKIDREFLQDLSAA 760
Query: 747 ERDY----EIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYY 793
+ + ++ ++ LAH+L ++ VAEGVE +L + CD AQGY+
Sbjct: 761 SEQFAASQQFIEVMVRLAHNLQMRVVAEGVETAEQYDLLCGMGCDEAQGYW 811
dbj|BAA17412| (D90905) hypothetical protein [Synechocystis sp.]
Length = 732
Score = 198 bits (497), Expect = 2e-49
Identities = 127/411 (30%), Positives = 208/411 (49%), Gaps = 6/411 (1%)
Query: 390 DKLTRLPTRIFFVKALSDR-LSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEV 448
D LT L R ++ L I + + ++ +D+D+F IN +G VGD +LI++
Sbjct: 307 DTLTGLANRALLLQRLEFAGHQIKNNPKSRFALLFIDLDHFKLINDSWGHSVGDALLIKI 366
Query: 449 ADSLRDSVRIGDILARLGADTFGVAL-TCADVPVAVNSFLARLNKLFSKPVIVNGKEIQV 507
A+ L+ ++R D+ RLG D F + L + ++ A++ R+ PV + KE+ V
Sbjct: 367 AEKLQINLRETDLAVRLGGDEFVIFLESITEIKQAID-VAERILIHLRLPVQIQAKELFV 425
Query: 508 TFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXX 567
SIGI + E E+L+ A AM++AK G N+ +
Sbjct: 426 KASIGIVIGSIHYYEPERLIRDADIAMYQAKNNGRNQYAVFDPSMHQTILERLSLEHDFR 485
Query: 568 XXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGL 626
L+YQP I L ++ G EALIRW+ +K + P + I + EETGL+ +G
Sbjct: 486 KALEQETLELYYQPIISLVNDRLQGFEALIRWQHPEKGYINPEQLIAIAEETGLIIILGQ 545
Query: 627 IVLEKACRQLKEWHK--KGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXX 684
++++AC+Q+ +W + +I ++IN+SP Q F++
Sbjct: 546 WIMQQACQQIAQWREITNDDKIYVSINLSPNQICRPLFVEEIENILQTTKLDGDALVLEI 605
Query: 685 TETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMD 744
TE L++++ + LK + GI++ IDDFGTGYSS+ +L +LPV+ LKID F+ +
Sbjct: 606 TEGVLIQHLEIVAECLKKIKSHGIKISIDDFGTGYSSLSYLYRLPVNYLKIDRSFINQIT 665
Query: 745 VNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
+ IVK +I L L ++TVAEGVE +L ++ C QGY++S
Sbjct: 666 EDSPSQSIVKTIITLGDLLDIQTVAEGVETNDQLNLLKKMGCGLGQGYFWS 716
gi|2983839 (AE000740) hypothetical protein [Aquifex aeolicus]
Length = 1054
Score = 197 bits (495), Expect = 4e-49
Identities = 128/413 (30%), Positives = 206/413 (48%), Gaps = 12/413 (2%)
Query: 381 EKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEV 440
E++E I + T L ++ F K LS L + ++ LD+ F+ + +G E
Sbjct: 634 EEVEWITTHNVETGLLNKVGFQKVLSPLLGKLSSTG---ALIALDMVGFSRLIKEFGEEA 690
Query: 441 GDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIV 500
K+L E+A L + R GDI+A+ D F + V S + ++ + FSKP+ +
Sbjct: 691 IKKLLKEIAVRLEKTFRRGDIIAKGDGDEFLIFAYPLKKKDDVLSLIEKIRQKFSKPLTI 750
Query: 501 NGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXX 560
+GK+I+++F IG+ +P DG +L A+ A+ EAK+ G VV +
Sbjct: 751 DGKKIRLSFYIGVVTYPYDGRTFSELYYRAITAVKEAKRRGAGEVVLFDEELDKEVERLI 810
Query: 561 XXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDKLVPPYEFIPLLEETGL 620
F +QP L++ KI EAL+R K+GDK+ P EFI LLE
Sbjct: 811 EGEKLLRKAVEENLFTFHFQPIYRLRDMKIFSLEALVRIKEGDKIHYPGEFIELLERGVF 870
Query: 621 MNEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXX 680
+ E ++ + R L +W+ + I++N+S F++ EF+++
Sbjct: 871 IKEFEEWMIRELRRLLGKWN-----VPISVNLSAINFKNDEFMENL---NLVCKEYPGKL 922
Query: 681 XXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFV 740
TE L+ENV L E G+ V +DDFGTGYSS +LK+LP+ +KID+ F+
Sbjct: 923 ILEITERLLIENVERTRRILGDFRECGL-VAVDDFGTGYSSFSYLKELPLDLIKIDMMFI 981
Query: 741 KDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYY 793
K M + +D +V+ ++ A +GLKT+ EG+E +ML + C Y QG+Y
Sbjct: 982 KSMLESSKDLALVEAIVFFAQKIGLKTLGEGIENAKQLEMLKRMGCTYGQGFY 1034
sp|Q11024|YD54_MYCTU HYPOTHETICAL 67.7 KD PROTEIN RV1354C >gi|1419057|emb|CAA99987|
(Z75555) hypothetical protein Rv1354c [Mycobacterium
tuberculosis]
Length = 623
Score = 196 bits (494), Expect = 5e-49
Identities = 132/447 (29%), Positives = 204/447 (45%), Gaps = 5/447 (1%)
Query: 352 EEEFYPAEVQLIINFLEELSTAIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSI 411
+ +++ AE+ ++ + + A +L + D LT L R ++ L RL
Sbjct: 149 DRKWHEAELNALMTIATLFAQVQARVAAEARLRYLADHDDLTGLHNRRALLQHLDQRL-- 206
Query: 412 AAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFG 471
A + V + LD+D AIN G GD+ + A + D++ ++ARLG D F
Sbjct: 207 APGQPGPVAALFLDLDRLKAINDYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFV 266
Query: 472 VALTCADVPVAVNSFLARLNKLFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYAL 531
+ A RL V + G+ + T SIG++ + LL A
Sbjct: 267 LIPASPMSADAAQPLAERLRDQLKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLRRAD 326
Query: 532 QAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIV 591
QA AK GG+ V +++ L Y P++DL+ IV
Sbjct: 327 QAALAAKHAGGDSVAIFTADMSVSGELRNDIELHLRRGIESDALRLVYLPEVDLRTGDIV 386
Query: 592 GCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGI--EIEI 648
G EAL+RW+ + L+ P FIP+ E L E+ VL +AC + EW G+ + +
Sbjct: 387 GTEALVRWQHPTRGLLAPGCFIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHDALL 446
Query: 649 AINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGI 708
IN+S Q +G F+ TE +V+++ A L L E+G+
Sbjct: 447 RINVSAGQLVTGGFVDFVADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKEVGV 506
Query: 709 RVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTV 768
+ IDDFGTGYS+I L+ LP+ LKID FV+ + N D IV+G++ LA L V
Sbjct: 507 HIAIDDFGTGYSAISLLQTLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQLDVV 566
Query: 769 AEGVEKEIHEKMLMELSCDYAQGYYYS 795
AEGVE E ++L++ C AQG+ +S
Sbjct: 567 AEGVETEAAARILLDQRCYRAQGFLFS 593
sp|P77334|YCIR_ECOLI HYPOTHETICAL 74.7 KD PROTEIN IN OSMB-RNB INTERGENIC REGION
>gi|1742099|dbj|BAA14839| (D90766) ORF_ID:o255#12;
similar to [SwissProt Accession Number Q11024]
[Escherichia coli] >gi|1742108|dbj|BAA14847| (D90767)
ORF_ID:o255#12; similar to [SwissProt Accession Number
Q11024] [Escherichia coli] >gi|1787541 (AE000226) orf,
hypothetical protein [Escherichia coli]
Length = 661
Score = 194 bits (489), Expect = 2e-48
Identities = 120/420 (28%), Positives = 211/420 (49%), Gaps = 9/420 (2%)
Query: 379 AHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQ--ERKKVVVVVLDIDNFTAINTLY 436
A E+L + D +T LP R A+ D + A + KV VV LD+DNF +N Y
Sbjct: 229 AQERLRILANTDSITGLPNR----NAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAY 284
Query: 437 GTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSK 496
G GD++L +V+ ++ + +LAR G D F + L A+ + +R+
Sbjct: 285 GHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEAMASRILTRLRL 343
Query: 497 PVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXX 556
P + E+ + S+GI++ P+ G+++ ++ +A AM+ AK+ G + ++
Sbjct: 344 PFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRV 403
Query: 557 XXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLL 615
++ YQPKI + + + EAL+RW+ ++ L+PP +FI
Sbjct: 404 FEYLWLDTNLRKALENDQLVIHYQPKITWRGE-VRSLEALVRWQSPERGLIPPLDFISYA 462
Query: 616 EETGLMNEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXX 675
EE+GL+ +G V+ RQ+ +W KGI + +A+NIS Q + +
Sbjct: 463 EESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNF 522
Query: 676 XXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKI 735
TE+ L+EN +A ++ S+LG +V++DDFGTGYSS+ L + P+ A+K+
Sbjct: 523 EYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKL 582
Query: 736 DVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
D FV+D+ +V+ ++ +A +L L+ +AEGVE + L + + QG+ ++
Sbjct: 583 DQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFA 642
sp|P55552|Y4LL_RHISN HYPOTHETICAL 91.8 KD PROTEIN Y4LL >gi|2182511 (AE000083) Y4lL
[Rhizobium sp. NGR234]
Length = 827
Score = 188 bits (473), Expect = 1e-46
Identities = 122/436 (27%), Positives = 198/436 (44%), Gaps = 5/436 (1%)
Query: 360 VQLIINFLEELSTAIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKV 419
V + ++ E + + + A +++ + D LT LP R F + +RLS ++
Sbjct: 372 VGIALDITERRNAEQERLLAQKQIHHMARHDALTGLPNRQFLREEF-ERLSDHIAPSTRL 430
Query: 420 VVVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADV 479
++ LD+D F AIN YG GD +L V + LR+ ++ DIL RL D F V +
Sbjct: 431 AILCLDLDGFKAINDAYGRATGDLLLRHVTERLRNFLKQSDILCRLSGDEFVVLRVGINS 490
Query: 480 PVAVNSFLARLNKLFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKK 539
+L + P + G + + +G++ ++L+ A A+ AK
Sbjct: 491 NAEARLLAQQLIDVIEAPYELAGTHVDLQVVVGLAAASKSDQSLDELIKTADIALERAKT 550
Query: 540 LGGNRVVYYSSXXXXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRW 599
GG +V Y + YQP +L+ +I EAL RW
Sbjct: 551 GGGGTIVQYEPKMDADLRARQRMKVSLRHALAKGELEVRYQPLANLRTGQITTFEALARW 610
Query: 600 KKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFR 658
++ V P EFI + EETGL+ +G +L +AC + +W + +A+N+SP QFR
Sbjct: 611 PHPERGQVSPAEFIAVAEETGLIGPLGEWILRQACTEAVKWPPY---VSVAVNLSPLQFR 667
Query: 659 SGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTG 718
+ + TE+ L+E LK + +LG+ V IDDFGTG
Sbjct: 668 NQRLASTVRNSLEDTGLDASRLQLEITESVLLEECDSNLQTLKEIRQLGVIVAIDDFGTG 727
Query: 719 YSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHE 778
YSS+ +L+ P +K+D F+ D+ ++ IV+ V + SLG+ T EGVE++
Sbjct: 728 YSSLSYLRTFPFDKIKVDRSFIADLPKSKESLAIVRAVAAIGRSLGIITTVEGVERQDQL 787
Query: 779 KMLMELSCDYAQGYYY 794
+ D AQGY +
Sbjct: 788 DTIKAEGFDEAQGYLF 803
gi|3659614 (AF052517) c-di-GMP phosphodiesterase A [Acetobacter xylinus]
Length = 765
Score = 185 bits (464), Expect = 2e-45
Identities = 123/428 (28%), Positives = 204/428 (46%), Gaps = 11/428 (2%)
Query: 373 AIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAI 432
A++ L ++ +D LT L R + + D IA + + + +LDID F I
Sbjct: 284 ALEQHATKTHLTQLARYDSLTGLLNRGALHRVMED--IIAQPGNRTLAIFMLDIDRFRDI 341
Query: 433 NTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNK 492
N G D+ L+E+A +R + +L+R G D F V + + + +L +
Sbjct: 342 NDALGHVYADQFLVEIAGRIRSIAKDDYVLSRSGGDEFVVVVPDCEGK-QIEEIAHKLLE 400
Query: 493 LFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXX 552
+P+ + + ++ SIGIS FP +G ++E LL +A AM +AK+ G + +
Sbjct: 401 TIGRPLQIGQNTLSISCSIGISTFPANGPDSESLLSHADTAMRQAKEDGRGIFRFANLEK 460
Query: 553 XXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEF 611
L YQP++ ++ G EAL RW + P F
Sbjct: 461 NQVAQDRLVLGSALRDSLAQGMLQLHYQPQVRTHTLELSGVEALSRWHHPHLGNIFPSRF 520
Query: 612 IPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIE-IAINISPAQFRSG---EFLQSFL 667
I + EETG + +G L +ACRQ+ +W + GI + +A+N+S FR+ E + + L
Sbjct: 521 IAVAEETGQIEAIGRWSLLEACRQIVKWDRDGIHVPTVAVNLSAVHFRNRALPEHIAALL 580
Query: 668 KDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQ 727
KD TE+ +++N L+S+ +G + +DDFGTGYSS+ L +
Sbjct: 581 KDHNLKPSRLTVEI---TESVMMDNSRDTEEVLQSIRNIGCGLSMDDFGTGYSSLSRLTR 637
Query: 728 LPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCD 787
LP++ +KID F+ D + + + VI + LG+ V EGVE E +L +L+CD
Sbjct: 638 LPLTEIKIDRSFINDFEYDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRDLLEKLNCD 697
Query: 788 YAQGYYYS 795
QGY ++
Sbjct: 698 VMQGYLFA 705
gb|AAF10046.1|AE001906_2 (AE001906) sensory box/GGDEF family protein [Deinococcus
radiodurans]
Length = 805
Score = 183 bits (460), Expect = 5e-45
Identities = 130/451 (28%), Positives = 211/451 (45%), Gaps = 28/451 (6%)
Query: 369 ELSTAIDAITAH-----EKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERK-----K 418
+L ++A TA +L+ D LT LP R F SDRLS A K +
Sbjct: 328 QLEERVEARTAELEALSRQLQHDALHDSLTGLPNRALF----SDRLSQAIARSKLPGGPQ 383
Query: 419 VVVVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCAD 478
V+ LD+D F IN G GD +L+E+A LR +R D +ARLG D F + L
Sbjct: 384 YAVLFLDVDRFKGINDTLGHPTGDAMLVEMARRLRACLRATDTVARLGGDEFTILLEPLQ 443
Query: 479 VPVAVNSFLARLNKLFSKPVIVNGK----------EIQVTFSIGISVFPDDGNEAEKLLG 528
AR+ +P+ + ++ ++ S+GI D + A +L
Sbjct: 444 STEQAAQVAARIQDALRRPMQMPAAGPGGLPGGWHQVTMSASLGIVHSQPDYDSAMAVLR 503
Query: 529 YALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEK 588
A AM+ AK G + ++ + YQP +DL
Sbjct: 504 DADIAMYRAKDGGRAKYRVFTPEMREHILHVNRMEHELRRALAADELRVRYQPVLDLDRG 563
Query: 589 KIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHK---KGI 644
+I G EAL+RW+ ++ L+ P +F P+ EE+GL+ ++ VL +ACR+L +W +
Sbjct: 564 RIEGFEALVRWQHPERGLLGPDDFTPIAEESGLLPDIDRWVLARACRELVQWQRLYPHDP 623
Query: 645 EIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLS 704
+ +++N + + + + TE++L+ ++ L
Sbjct: 624 PLHLSVNFCSQHLAAPDVHERVKELLQRTGFDPGRLNLEITESSLLSQTGDVQRNMERLR 683
Query: 705 ELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLG 764
+LG+R+++DDFGTGYSS+ +L+ P+ LKID FV+ M N+ + E+V+ ++ +A +L
Sbjct: 684 QLGVRLHLDDFGTGYSSLSYLQLYPIDVLKIDRSFVQGMLDNDSNAELVRTIVAMAKNLN 743
Query: 765 LKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
LK VAEG+E L L CD QG+ +S
Sbjct: 744 LKVVAEGIEDPRQLAALRGLGCDAGQGFLFS 774
gi|3659621 (AF052519) c-di-GMP phosphodiesterase A [Acetobacter xylinus]
Length = 740
Score = 183 bits (459), Expect = 6e-45
Identities = 126/429 (29%), Positives = 201/429 (46%), Gaps = 12/429 (2%)
Query: 373 AIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAI 432
A + E + + FD LT L R K + +S ++ + +LDID F I
Sbjct: 280 AFEQNATQEHISHLANFDSLTGLLNRSSVHKVIEGMIS-KQDGNRQFAIFMLDIDRFRDI 338
Query: 433 NTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVP-VAVNSFLARLN 491
N G D+ LIE+A +R + +L+R G D F V + D P F L
Sbjct: 339 NDALGHVYADQFLIEIAARIRSIAKEDYVLSRSGGDEFVVVVP--DCPHKEATDFAEHLL 396
Query: 492 KLFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSX 551
+ P+ + + ++ SIGIS +PD+G ++E LL A A+ +AK+ G + +
Sbjct: 397 ASMTMPMQIGQNTLTISCSIGISTYPDNGPDSESLLSTADVALRQAKEDGRGVFRFANLE 456
Query: 552 XXXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYE 610
L YQP++ ++ G EAL RW + P
Sbjct: 457 KNQVAQDRLVLGSALRDSLAKGMLNLHYQPQVRTHTLELSGVEALSRWHHPHLGNIFPSR 516
Query: 611 FIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIE-IAINISPAQFRSG---EFLQSF 666
FI + EETG + +G L +ACRQ+ +W + GI + +A+N+S FR+ E + +
Sbjct: 517 FIAVAEETGQIEAIGRWSLLEACRQIVKWDRDGIHVPTVAVNLSAVHFRNRALPEHIAAL 576
Query: 667 LKDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLK 726
LKD TE+ +++N L+S+ +G + +DDFGTGYSS+ L
Sbjct: 577 LKDHNLKPSRLTVEI---TESVMMDNSRDTEEVLQSIRNIGCGLSMDDFGTGYSSLSRLT 633
Query: 727 QLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSC 786
+LP++ +KID F+ D + + + VI + LG+ V EGVE E +L +L+C
Sbjct: 634 RLPLTEIKIDRSFINDFEHDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRDLLEKLNC 693
Query: 787 DYAQGYYYS 795
D QGY ++
Sbjct: 694 DVMQGYLFA 702
gi|2983047 (AE000686) hypothetical protein [Aquifex aeolicus]
Length = 850
Score = 182 bits (457), Expect = 1e-44
Identities = 130/448 (29%), Positives = 227/448 (50%), Gaps = 12/448 (2%)
Query: 352 EEEFYPAEVQLIINFLEELSTAIDAITAHEKLEKIEFF---DKLTRLPTRIFFVKALSDR 408
E+ + A + ++ L + + AI+++ + +IEF+ D LT L + F + L+
Sbjct: 401 EDPYKRAVLDSVLATLVNVIGSAKAISSY--VNEIEFYAMRDPLTFLYNQRTFWELLNYE 458
Query: 409 LSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGAD 468
L A + + + +++LD+DNF IN YG VGD+VL EVA + + R D+ AR G D
Sbjct: 459 LERANRFERSLSLLLLDLDNFKVINDTYGHAVGDRVLREVARIISEKKRKADVAARYGGD 518
Query: 469 TFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGKE-IQVTFSIGISVFPDDGNEAEKLL 527
F V + A+ A+N + + S + V+ E + SIGI+ +P+ + L
Sbjct: 519 EFAVIVIGANSNQALNLARRLKDAIESLSIPVSESETVSPRVSIGIASYPEHALTSRDLF 578
Query: 528 GYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXXXXXXXXFIL-FYQPKIDLK 586
A + +AK+ G +++ + I F+QP ++LK
Sbjct: 579 IIADSMLRKAKEEGRSKIRVPTIEDLQMSRVELTKKSMLVLDALNKRLIKPFFQPIVELK 638
Query: 587 EKKIVGCEALIRWKKGDKLVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEI 646
++ E L+R G + +P EFI E G++ + LI+ E+ ++L E + +
Sbjct: 639 SGELFANEVLMRI--GKENIPASEFIEAAENLGVIVRMDLILYEETLKKLVE---EQYDK 693
Query: 647 EIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSEL 706
+ +N+S S +FL++ L+ TE V+N+ + FL+ L E+
Sbjct: 694 YVFMNLSSRALTSEDFLKNILRIVENSGFDPAKIVFELTERESVKNIDLVKRFLEELKEV 753
Query: 707 GIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLK 766
GI+ IDDFG+GYSS +LK++PV +KI+ EFVK + RD ++ ++ LA + ++
Sbjct: 754 GIKFAIDDFGSGYSSFHYLKKIPVDFVKIEGEFVKGALTDWRDKTFIESIVTLAKGMHIR 813
Query: 767 TVAEGVEKEIHEKMLMELSCDYAQGYYY 794
TVAE +E E ++++ E+ DY QGYY+
Sbjct: 814 TVAEFIENEEIKEIMKEIGVDYGQGYYF 841
gi|1787765 (AE000246) putative enzyme [Escherichia coli]
Length = 807
Score = 181 bits (454), Expect = 2e-44
Identities = 125/427 (29%), Positives = 201/427 (46%), Gaps = 13/427 (3%)
Query: 373 AIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAI 432
A++ + + +E++ FD +T LP R L D + A VV ++ +D+ +
Sbjct: 370 ALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDKAVSP----VVYLIGVDHIQDV 425
Query: 433 NTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNK 492
G D+ L+EV + R+ ++ L R+ F + DV + L
Sbjct: 426 IDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFVLVSLENDVS-NITQIADELRN 484
Query: 493 LFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXX 552
+ SKP++++ K +T SIGIS D G + LL A AM +K GGN ++S
Sbjct: 485 VVSKPIMIDDKPFPLTLSIGISY--DLGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAM 542
Query: 553 XXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDKL---VPPY 609
L YQP+I + ++ G EAL RW D L VPP
Sbjct: 543 NEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWH--DPLHGHVPPS 600
Query: 610 EFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIE-IAINISPAQFRSGEFLQSFLK 668
FIPL EE G + +G V+ +ACRQL EW + I I +++N+S FRS +
Sbjct: 601 RFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSD 660
Query: 669 DXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQL 728
TE+ ++E+ + ++ L ++G+ + +DDFGTG+S + L L
Sbjct: 661 AMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSL 720
Query: 729 PVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDY 788
PV+ +KID FV +R +++ + ++ SL L VAEGVE + +ML ++ C
Sbjct: 721 PVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRV 780
Query: 789 AQGYYYS 795
QGY++S
Sbjct: 781 IQGYFFS 787
Score = 34.8 bits (78), Expect = 2.8
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 170 NFKINFINKTGEEKLKFKREEVVGKPFTELLPERYRGVY----RLLCELCKMKGSGTLPE 225
N ++ F N E+ +KREEV+G L+P R + R E K + G E
Sbjct: 39 NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 98
Query: 226 VVYLGNPKLAILKPFEVSYQTLSVNGETFFIIDLRDVSEEV-KKERERQRI 275
+ I F +S +S G+ +++ +RD S E+ +KE+ RQ I
Sbjct: 99 LQLEKKDGSKIWTRFALS--KVSAEGKVYYLALVRDASVEMAQKEQTRQLI 147
sp|P76129|YDDU_ECOLI HYPOTHETICAL 90.3 KD PROTEIN IN OSMC-GADC INTERGENIC REGION
>gi|1742440|dbj|BAA15154| (D90790) Sensor protein FixL
(EC 2.7.3.-). [Escherichia coli]
>gi|1742447|dbj|BAA15160| (D90791) Sensor protein FixL
(EC 2.7.3.-). [Escherichia coli]
Length = 799
Score = 181 bits (454), Expect = 2e-44
Identities = 125/427 (29%), Positives = 201/427 (46%), Gaps = 13/427 (3%)
Query: 373 AIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAI 432
A++ + + +E++ FD +T LP R L D + A VV ++ +D+ +
Sbjct: 362 ALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDKAVSP----VVYLIGVDHIQDV 417
Query: 433 NTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNK 492
G D+ L+EV + R+ ++ L R+ F + DV + L
Sbjct: 418 IDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFVLVSLENDVS-NITQIADELRN 476
Query: 493 LFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXX 552
+ SKP++++ K +T SIGIS D G + LL A AM +K GGN ++S
Sbjct: 477 VVSKPIMIDDKPFPLTLSIGISY--DLGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAM 534
Query: 553 XXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDKL---VPPY 609
L YQP+I + ++ G EAL RW D L VPP
Sbjct: 535 NEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWH--DPLHGHVPPS 592
Query: 610 EFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIE-IAINISPAQFRSGEFLQSFLK 668
FIPL EE G + +G V+ +ACRQL EW + I I +++N+S FRS +
Sbjct: 593 RFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSD 652
Query: 669 DXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQL 728
TE+ ++E+ + ++ L ++G+ + +DDFGTG+S + L L
Sbjct: 653 AMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSL 712
Query: 729 PVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDY 788
PV+ +KID FV +R +++ + ++ SL L VAEGVE + +ML ++ C
Sbjct: 713 PVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRV 772
Query: 789 AQGYYYS 795
QGY++S
Sbjct: 773 IQGYFFS 779
Score = 34.8 bits (78), Expect = 2.8
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 170 NFKINFINKTGEEKLKFKREEVVGKPFTELLPERYRGVY----RLLCELCKMKGSGTLPE 225
N ++ F N E+ +KREEV+G L+P R + R E K + G E
Sbjct: 31 NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 90
Query: 226 VVYLGNPKLAILKPFEVSYQTLSVNGETFFIIDLRDVSEEV-KKERERQRI 275
+ I F +S +S G+ +++ +RD S E+ +KE+ RQ I
Sbjct: 91 LQLEKKDGSKIWTRFALS--KVSAEGKVYYLALVRDASVEMAQKEQTRQLI 139
dbj|BAA15144| (D90789) Sensor protein FixL (EC 2.7.3.-). [Escherichia coli]
Length = 467
Score = 181 bits (454), Expect = 2e-44
Identities = 125/427 (29%), Positives = 201/427 (46%), Gaps = 13/427 (3%)
Query: 373 AIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAI 432
A++ + + +E++ FD +T LP R L D + A VV ++ +D+ +
Sbjct: 30 ALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDKAVSP----VVYLIGVDHIQDV 85
Query: 433 NTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNK 492
G D+ L+EV + R+ ++ L R+ F + DV + L
Sbjct: 86 IDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFVLVSLENDVS-NITQIADELRN 144
Query: 493 LFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXX 552
+ SKP++++ K +T SIGIS D G + LL A AM +K GGN ++S
Sbjct: 145 VVSKPIMIDDKPFPLTLSIGISY--DLGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAM 202
Query: 553 XXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDKL---VPPY 609
L YQP+I + ++ G EAL RW D L VPP
Sbjct: 203 NEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWH--DPLHGHVPPS 260
Query: 610 EFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIE-IAINISPAQFRSGEFLQSFLK 668
FIPL EE G + +G V+ +ACRQL EW + I I +++N+S FRS +
Sbjct: 261 RFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFRSNQLPNQVSD 320
Query: 669 DXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQL 728
TE+ ++E+ + ++ L ++G+ + +DDFGTG+S + L L
Sbjct: 321 AMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSL 380
Query: 729 PVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDY 788
PV+ +KID FV +R +++ + ++ SL L VAEGVE + +ML ++ C
Sbjct: 381 PVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRV 440
Query: 789 AQGYYYS 795
QGY++S
Sbjct: 441 IQGYFFS 447
gi|3659618 (AF052518) c-di-GMP phosphodiesterase A [Acetobacter xylinus]
Length = 752
Score = 173 bits (433), Expect = 7e-42
Identities = 119/425 (28%), Positives = 196/425 (46%), Gaps = 5/425 (1%)
Query: 373 AIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAI 432
AI+ + + ++ FD LT L R + +RL + + + + +V DID F I
Sbjct: 304 AIEQSETRQHIAQLSNFDSLTGLLNRTSLHNII-ERLIMRGGDSQFSLFMV-DIDRFRDI 361
Query: 433 NTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNK 492
N G D+ LIE+ +R V+ I++R G D F + + A F L
Sbjct: 362 NDALGHVNADRFLIEIGRRIRHLVKDEYIVSRSGGDEFIIVVPECSHERA-EKFAENLIN 420
Query: 493 LFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXX 552
++P+ V + ++ +GIS FP +G ++E LL +A A +AK+ G +
Sbjct: 421 AIARPLQVGENTLSISCCVGISTFPANGPDSESLLSHADAATRQAKEDGRGLFRFAGQEK 480
Query: 553 XXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEF 611
L YQP+++ + G EAL RW + P F
Sbjct: 481 NQVAQDRLVLGSALRDSLSKGMLNLNYQPQVETMTGGLYGVEALSRWHHPTLGNIYPSRF 540
Query: 612 IPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEIE-IAINISPAQFRSGEFLQSFLKDX 670
I + EETG + +G LE+AC Q+ +W + G+ + +A+N+S FR+ +
Sbjct: 541 IAVAEETGQIEAIGRWSLEEACSQMVKWDRDGVRVPTVAVNLSAVHFRNRGLPEHIANLL 600
Query: 671 XXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPV 730
TE+ ++++ S L ++ L + + +DDFGTGYSS+ L +LP+
Sbjct: 601 KHHGLTPDRLTVEITESVMMDSSSETEEVLHAIRRLDVGLSMDDFGTGYSSLSRLTRLPL 660
Query: 731 SALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQ 790
+ +KID F+ D + + + VI + LG+ V EGVE E ++L EL CD Q
Sbjct: 661 TEIKIDRSFINDFEHDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQWRLLEELHCDVMQ 720
Query: 791 GYYYS 795
GY +S
Sbjct: 721 GYLFS 725
dbj|BAA16762| (D90900) hypothetical protein [Synechocystis sp.]
Length = 706
Score = 166 bits (417), Expect = 5e-40
Identities = 103/442 (23%), Positives = 209/442 (46%), Gaps = 5/442 (1%)
Query: 356 YPAEVQLIINFLEELSTAIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQE 415
Y E Q+I ++L +++ A + L + F+D +T LP FF + L+ L+ ++
Sbjct: 245 YLTENQIIRSYLIDITRRQQA---EDSLAQHTFYDPMTGLPNHAFFEEQLAIALAKVQRD 301
Query: 416 RKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALT 475
+ ++ ++ L+ N+ + +G G+ +L VA L + R F + L
Sbjct: 302 QSRLAILFLNFYNYERMINAFGLGCGEILLKTVAKRLSQWTEKRGLACRWQGKQFAILLK 361
Query: 476 CADVPVAVNSFLARLNKLFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMF 535
A+ + + + + + V ++I + +GI+V+PD G + LL + A+
Sbjct: 362 EPGDNQALTEMVKEMLAMLEESIDVAKQKIHLKGKVGIAVYPDGGTDGATLLKNSHTALE 421
Query: 536 EAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEA 595
+ K+ + +++ F L YQP + + +I G EA
Sbjct: 422 QIKEKHFDSFAFFNEKAASKANLFFRLENLLYEALDKHQFYLTYQPILQITTGEITGMEA 481
Query: 596 LIRWKKGD-KLVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIE-IEIAINIS 653
L+RW + + P IPL E+T L+ +G +L AC+Q ++W GI + + IN+
Sbjct: 482 LLRWHHPEIGEISPVNLIPLAEKTDLIVPIGEWILRTACQQNRQWQGAGIPPLPVCINLC 541
Query: 654 PAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYID 713
QF++ + + TE+ +++N+ + ++ L+ +G+ + +D
Sbjct: 542 LNQFQNPHLIANIQSILEENQLEPHWLTIEVTESIIMDNIDYSRRAIEQLATIGVNLSLD 601
Query: 714 DFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVE 773
DFG G ++ L+Q + A+KI F+KD++ + + I+ ++ L LG++ ++EGVE
Sbjct: 602 DFGIGLGTLSCLQQFKIPAVKIHESFIKDLEQSPVNEAIITSIMTLGRKLGVRIISEGVE 661
Query: 774 KEIHEKMLMELSCDYAQGYYYS 795
+ ++L +L C QG+++S
Sbjct: 662 TQQQLEVLQKLECQEIQGFWFS 683
dbj|BAA16761| (D90900) hypothetical protein [Synechocystis sp.]
Length = 853
Score = 166 bits (416), Expect = 7e-40
Identities = 109/417 (26%), Positives = 183/417 (43%), Gaps = 2/417 (0%)
Query: 381 EKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEV 440
E L +D +++LP R+ K LS + AA + + V+ + ++ IN YG
Sbjct: 423 ETLANQALYDPISKLPNRVNLQKELSLAIDAAAHHQHLMGVMFIHLEILNRINQAYGFGF 482
Query: 441 GDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIV 500
GD+V + ++ D +R GD + + ++T + L P R+ P+ V
Sbjct: 483 GDEVFMAFHGAISDCMRSGDTVGQWDSNTLVIILAKIKSPQDSIRLAERILDRLKNPITV 542
Query: 501 NGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXX 560
+E +IGIS +P+DGN AE LL A A+ + ++ G N Y
Sbjct: 543 REREFIFNINIGISAYPNDGNRAEDLLSRANAALQKLRQTGFNHYQCYDPKFSTAALHQA 602
Query: 561 XXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGD-KLVPPYEFIPLLEETG 619
L YQP+I L+ +I EAL+RW+ + + P + IP+ +
Sbjct: 603 RLENLLQQAIAKRQLTLQYQPQIHLQSGEITAIEALLRWEHPEVGEIAPGKIIPIAARSN 662
Query: 620 LMNEVGLIVLEKACRQLKEWHKKGIEIE-IAINISPAQFRSGEFLQSFLKDXXXXXXXXX 678
L+ E+ + AC+Q EW K G IAIN+S +F + + K
Sbjct: 663 LIFELSDWIFRTACQQNLEWQKDGSPPRAIAINLSAREFYRQDLVMMVGKTLEETGLDPQ 722
Query: 679 XXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVE 738
TE L + + A L+ L G+R+ +DDFG G I + Q P + +KI
Sbjct: 723 WLELEITENTLRQQPAKALAILQDLKTFGVRIALDDFGLGQMGIGFVTQFPFTTIKIHQG 782
Query: 739 FVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
F+ + ++ I++ + L+ + VAEG+E + ++ +L C QG+ S
Sbjct: 783 FMARLRGTPQEMAILQSIFALSQGFQYRLVAEGIETDAQLSLIKQLQCQEVQGFLLS 839
gb|AAF11189.1|AE002006_2 (AE002006) c-di-GMP phosphodiesterase A [Deinococcus radiodurans]
Length = 790
Score = 162 bits (405), Expect = 1e-38
Identities = 110/386 (28%), Positives = 184/386 (47%), Gaps = 8/386 (2%)
Query: 390 DKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVA 449
D LT LP R+ +AL ++ A + ++ LD+D+F +N G GD +L+ +
Sbjct: 401 DALTGLPNRLALHEALGQQV---AADSAPFALLCLDLDHFKTVNHTLGQPAGDALLLYIG 457
Query: 450 DSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGKEIQVTF 509
+ ++ +V R G + F V L + L ++P++++G+ + VT
Sbjct: 458 ERVQAAVGEQGQTFRRGGNEFVVLLPAVRAAPDALTIAQTLLDTINEPLLLDGQALVVTA 517
Query: 510 SIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXXX 569
SIG+++FP+DG ++ L A A+ AK+ GG + Y +
Sbjct: 518 SIGLALFPEDGRDSLTLQKNADLALHAAKQEGG-QAQRYRNALSQAANERLELTQALRSG 576
Query: 570 XXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGD-KLVPPYEFIPLLEETGLMNEVGLIV 628
+L YQP ++++ K V EAL+RW+ L+ P FI L E+ GL+ +G V
Sbjct: 577 IGNGELVLHYQPIVEVRSGKTVAVEALVRWQHPRLGLLSPDRFIGLAEDNGLIVPLGRWV 636
Query: 629 LEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETA 688
L A RQL W + E+ +++N++P Q + Q TE
Sbjct: 637 LNTALRQLAAWREHWPELRVSVNMAPRQLQQPGSCQEIRDALRAYALPPDALELEITEQT 696
Query: 689 LVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDV-NE 747
+ + ++ FL + E G+R+ IDDFGTGYSS+ L +LP LK+D ++D+ N
Sbjct: 697 ICDEEALEP-FLPLIRE-GLRLAIDDFGTGYSSLSRLYRLPAQILKLDRSLIQDLSADNA 754
Query: 748 RDYEIVKGVINLAHSLGLKTVAEGVE 773
D +V +I A G++ AEG+E
Sbjct: 755 TDGPLVSALIAFAQRFGMQVTAEGIE 780
gi|1000118 (U32936) orf 421 [Synechocystis PCC6803] >gi|1653828|dbj|BAA18739|
(D90916) hypothetical protein [Synechocystis sp.]
Length = 421
Score = 160 bits (400), Expect = 5e-38
Identities = 90/221 (40%), Positives = 121/221 (54%), Gaps = 2/221 (0%)
Query: 577 LFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQ 635
LFYQPK+ + + GCEALIRW K V P FIP+ E+TG ++ VG V+E RQ
Sbjct: 176 LFYQPKVSIHNHCLAGCEALIRWHHPRKGFVSPGLFIPIAEKTGFISVVGEWVIETVLRQ 235
Query: 636 LKEWHKKGIE-IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVS 694
++W +G++ I++AINIS QF + + TET LV+NV
Sbjct: 236 CQQWQYQGLDPIQVAINISARQFHGEDLICILRLGTHKYDVSPQQLEVELTETLLVKNVQ 295
Query: 695 VATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVK 754
+ L L G V IDDFGTGYSS+ +L+Q P LKID FV+ +D N ++ I
Sbjct: 296 DSIKQLNELRAEGFSVAIDDFGTGYSSLSYLQQFPFDVLKIDQSFVRHIDKNAKNKTITA 355
Query: 755 GVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
+INLAH L L+ AEGVE + + CD QGY +S
Sbjct: 356 SIINLAHELELRVTAEGVETWAEYDTIAHMGCDELQGYLFS 396
emb|CAB37587| (AL035569) putative membrane associated phophodiesterase
[Streptomyces coelicolor]
Length = 1108
Score = 157 bits (392), Expect = 4e-37
Identities = 119/419 (28%), Positives = 188/419 (44%), Gaps = 14/419 (3%)
Query: 390 DKLTRLPTRIFFVKALSDRLS-IAAQER----KKVVVVVLDIDNFTAINTLYGTEVGDKV 444
D LT LP R F + + LS A +R + V+ +D+D F +N G + GD++
Sbjct: 614 DPLTDLPNRALFTRRVQQALSGRRASDRGAALRGTAVLFIDLDGFKGVNDTIGHQAGDEL 673
Query: 445 LIEVADSLRDSVRIGDILARLGADTFGV------ALTCADVPVAVNSFLARLNKLFSKPV 498
L++ A L ++VR GD +RLG D F A A + RL S+P
Sbjct: 674 LVQAARRLHEAVRKGDTASRLGGDEFAALIVGDGARDRAAREGHIRELADRLRLTLSQPY 733
Query: 499 IVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXX 558
+++G E++V SIG++ F + G A +LL A AM+ AK G RV Y
Sbjct: 734 LIDGNEVRVNASIGVA-FAEPGLGAGELLRNADLAMYRAKAGGKGRVELYRPQMQQDVVR 792
Query: 559 XXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGD-KLVPPYEFIPLLEE 617
F L +QP + L + +I A RW+ L P EF+ + EE
Sbjct: 793 KAELATRLRAALHDGEFALLHQPVVSLTDGRITSVCAQARWRSSQGVLFTPAEFLRVTEE 852
Query: 618 TGLMNEVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSGEF-LQSFLKDXXXXXXX 676
E+ VL +A Q E G+ + +AI I + L S
Sbjct: 853 GDRTAELDRWVLREAVEQAAERAAAGLSVSVAIRIGARRLLDRSMPLGSVEALLTRHGLP 912
Query: 677 XXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKID 736
++ + L +L +G+R+ +D FG+GY++I L++LPV LK+D
Sbjct: 913 PGSLVIELSDIDPRVGLDELDRRLNALRRVGVRIALDGFGSGYAAITALRRLPVDVLKLD 972
Query: 737 VEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
V+ + + R ++I G++ +A LGLK+VA+GV+ L + C + QG +S
Sbjct: 973 RGLVEGVVESARLHKITSGLLRIATDLGLKSVADGVDLPEQIVALRAMGCTHGQGMAFS 1031
dbj|BAA18387| (D90913) hypothetical protein [Synechocystis sp.]
Length = 332
Score = 154 bits (385), Expect = 3e-36
Identities = 83/223 (37%), Positives = 123/223 (54%), Gaps = 2/223 (0%)
Query: 575 FILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKAC 633
F L YQP+ID+K ++G E LIRW + P EFIP+ E+TGL+ +G VL+++C
Sbjct: 84 FHLHYQPQIDIKTGALLGVETLIRWHHPRLGFISPAEFIPIAEQTGLIVPMGYWVLQQSC 143
Query: 634 RQLKEWHKKGIE-IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVEN 692
Q + W +GI ++++N+S Q + + TE+ ++
Sbjct: 144 LQYQRWLSQGIPPFKLSVNLSLRQLQEANLVSEIESIVAQTQISYQQITLEVTESLMLYE 203
Query: 693 VSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEI 752
L L+E+GI++ IDDFG GYSS+ +LK LP+ LKID F+ D+ E++ I
Sbjct: 204 PGETINRLNQLNEMGIQIAIDDFGVGYSSLSYLKDLPLQTLKIDKSFLDDLLTREKNQVI 263
Query: 753 VKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
++ +I L H L LK VAEGVE ML + CDY QGY +S
Sbjct: 264 LQSIIELGHRLDLKIVAEGVESVEQLAMLKSMDCDYGQGYLFS 306
gi|3128306 (AF010496) potential nitrogen fixation positive activator protein
[Rhodobacter capsulatus]
Length = 698
Score = 153 bits (383), Expect = 5e-36
Identities = 119/409 (29%), Positives = 183/409 (44%), Gaps = 11/409 (2%)
Query: 390 DKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVA 449
D LT LP R + L S+ V+ +D+ F IN G GD L+E A
Sbjct: 276 DALTSLPNRFAMREHLD---SLRDSSDVDCAVLAIDLVRFKQINDTVGHLGGDAFLVEFA 332
Query: 450 DSLRDSVRIGDILARLGADTFGVALTCA-DVPVAVNSFLARLNKLFSKPVIVNGKEIQVT 508
LR LAR G D F V + + D+ V ++N+L +P++ NG +V
Sbjct: 333 ARLRAIADETAFLARYGGDEFFVVFSASRDLDRIVAEKCRQINRLSEQPILCNGVSFEVL 392
Query: 509 FSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXX 568
S G++ G E E+LL A +AM+ AK VV Y
Sbjct: 393 SSKGLAFEDRRGMEQEELLRRADRAMYSAKLRETLEVVRYDKRMESEDLDHKRIERELRR 452
Query: 569 XXXXXXFI-LFYQPKIDLKEKKI-VGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVG 625
+ + YQP + + EAL RW + V P FI + E +GL+ +G
Sbjct: 453 ALAEGEGLEIHYQPIVPASLGAAPIRYEALARWTSPELGAVAPDRFIKVAEASGLIMPLG 512
Query: 626 LIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXT 685
+L+ C ++ + ++INISPAQ S F + F T
Sbjct: 513 WRLLDLVCADMRLMD----QARVSINISPAQLMSRGFAEKFTAVVLSHGIAPWRIEVEVT 568
Query: 686 ETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDV 745
E +V + + L +LS G + +DDFGTG++SI +L Q+P LKID FV+ ++
Sbjct: 569 EQIVVRDDATIEHELIALSHNGFTLALDDFGTGFASIGYLTQMPFDVLKIDRSFVRSIED 628
Query: 746 NERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYY 794
++ +V+ ++ LA ++ L VAEGVE E +L + D+ QGY++
Sbjct: 629 GQQGMRMVRSIVGLARAMELSIVAEGVESEAEAVLLRRIGADFLQGYHF 677
dbj|BAA16989| (D90902) hypothetical protein [Synechocystis sp.]
Length = 303
Score = 153 bits (383), Expect = 5e-36
Identities = 87/224 (38%), Positives = 128/224 (56%), Gaps = 4/224 (1%)
Query: 575 FILFYQPKIDLKEKKIVGCEALIRWKKGDKL--VPPYEFIPLLEETGLMNEVGLIVLEKA 632
F L +QP+ D + +VG EAL+RW+ KL VPP EFIP+ EETGL+ +G VL+ A
Sbjct: 53 FRLDFQPQWDGQGINLVGVEALVRWQD-PKLGNVPPAEFIPIAEETGLVTAIGEWVLDTA 111
Query: 633 CRQLKEWHKKGIE-IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVE 691
CRQ K W +G+ + +N+S Q + +F ++ TE +
Sbjct: 112 CRQYKIWQAQGVPAFLLGVNLSLQQLQKADFAETVRCILEETNMPAAQLQLEMTEGLIFR 171
Query: 692 NVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYE 751
++ L+ L LG+ + IDDFGTGYSS+ LK+LPV LKID F++D++ +++
Sbjct: 172 DLQHTIGVLRDLQRLGVHLAIDDFGTGYSSLSVLKELPVHTLKIDKSFLEDLETHQKAEV 231
Query: 752 IVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
I++ +INL L L VAEGVE E +L L CD QG+++S
Sbjct: 232 IIESIINLGQRLQLVVVAEGVETEGQLHLLQSLRCDVLQGFFFS 275
dbj|BAA16763| (D90900) hypothetical protein [Synechocystis sp.]
Length = 613
Score = 148 bits (370), Expect = 2e-34
Identities = 111/442 (25%), Positives = 197/442 (44%), Gaps = 30/442 (6%)
Query: 381 EKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEV 440
E + + D T LP + F++ L+ LS A + +V V++ I+N++ + G V
Sbjct: 156 ETFHEQSYLDTATDLPNQTLFLEYLNIALSNARRHHAQVGVLLCQINNWSDLKRKRGDAV 215
Query: 441 GDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIV 500
+ L E L+ ++R GDI++R D F ++ ++ RL K PV
Sbjct: 216 ANAFLQEAGQKLKSNLRNGDIVSRWDKDEFIFLVSKVQDTSSLLGIAQRLMKPVLAPVTA 275
Query: 501 NGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAK---------------------K 539
G+ Q + G++++P DG + L+G+ + + + +
Sbjct: 276 GGRPFQPEITYGVALYPVDGEQVNDLIGHIRENLQQLLPQPTNPGSGEADDHIETAVDVR 335
Query: 540 LGGNRVVYYSSXXXXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRW 599
+G + V L+YQP+I+ ++K I EA IRW
Sbjct: 336 IGAPQPV--PGLSDSDQKRLAIVEKRLLRALEQHELELYYQPQINWRKKTIEAMEAFIRW 393
Query: 600 KKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHKK-GIEIEIAINISPAQF 657
+ K L+PP +F+P ++T M + +LE AC+Q W ++ +++NIS QF
Sbjct: 394 QHPQKGLLPPGQFLPWSDQTEFMVPLTRWILETACQQNVLWQQQLQTPFLVSVNISEKQF 453
Query: 658 RSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGT 717
++ E+ ++++ +A + +L G+ +DDFGT
Sbjct: 454 YHPLLKNMVMEAIAMAKMETHYLELEIQESTVMKDFGLAQQIITNLHNYGVGFSLDDFGT 513
Query: 718 GYSSILHLKQLPVSALKID----VEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVE 773
Y S+ L+ LP LKID + ++ D N + +++ +INL + LK VAEGVE
Sbjct: 514 DYMSLRCLQDLPFQKLKIDKSLTAQLLEQTD-NVPNLTMMETLINLGKTFNLKVVAEGVE 572
Query: 774 KEIHEKMLMELSCDYAQGYYYS 795
+E +L L+C + QGY +S
Sbjct: 573 QEEQINILDSLNCFFMQGYCFS 594
gi|2944145 (U80214) Urf2 [Pseudomonas stutzeri]
Length = 329
Score = 146 bits (366), Expect = 5e-34
Identities = 88/225 (39%), Positives = 124/225 (55%), Gaps = 12/225 (5%)
Query: 577 LFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQ 635
L YQP +DL+ IVG EAL+RW+ L+PP +F+P++E +GLM E+G VL +ACRQ
Sbjct: 25 LHYQPVVDLRSGGIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLMPEIGAWVLGEACRQ 84
Query: 636 LKEWHKKGIE-IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVS 694
+++W +A+N S +Q G ++K E L E+V+
Sbjct: 85 MRDWRMLAWRPFRLAVNASASQV--GPDFDGWVKGVLADAELPAEYL----EIELTESVA 138
Query: 695 VA--TLF--LKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDY 750
+F L +L ++G+R DDFGTGYS + HLK P+S LKID FV + RD
Sbjct: 139 FGDPAIFPALDALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFVAGLAKGRRDQ 198
Query: 751 EIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
IV VI LAH LG+ VAEGVE +L + CD QG+ ++
Sbjct: 199 TIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQADCDTGQGFLFA 243
emb|CAA77326| (Z00027) orf-2 [Pseudomonas aeruginosa]
Length = 329
Score = 146 bits (366), Expect = 5e-34
Identities = 88/225 (39%), Positives = 125/225 (55%), Gaps = 12/225 (5%)
Query: 577 LFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQ 635
L YQP +DL+ IVG EAL+RW+ L+PP +F+P++E +GLM E+G VL +ACRQ
Sbjct: 25 LHYQPVVDLRSGGIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLMPEIGAWVLGEACRQ 84
Query: 636 LKEWHKKGIE-IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVS 694
+++W +A+N S +Q G ++K E L E+V+
Sbjct: 85 MRDWRMLAWRPFRLAVNASASQV--GPDFDGWVKGVLADAELPAEYL----EIELTESVA 138
Query: 695 VA--TLF--LKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDY 750
+F L +L ++G+R DDFGTGYS + HLK P+S LKID FV + + RD
Sbjct: 139 FGDPAIFPALDALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFVAGLANDRRDQ 198
Query: 751 EIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
IV VI LAH LG+ VAEGVE +L + CD QG+ ++
Sbjct: 199 TIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQADCDTGQGFLFA 243
gi|3659619 (AF052518) diguanylate cyclase [Acetobacter xylinus]
Length = 574
Score = 140 bits (350), Expect = 4e-32
Identities = 112/504 (22%), Positives = 215/504 (42%), Gaps = 8/504 (1%)
Query: 315 AEITLDGHTIIKKGKMGEYSVCFKLKSKEKYYLTLSKEEEFYPAEVQLIINFLEELSTAI 374
A+ D + IK G++ ++C + K Y++ + + I ++
Sbjct: 72 ADFFRDLYRTIKAGQLWRGNICNRAKDGSLYWVATTIIPKI--DRQGTITGYVASRFEIT 129
Query: 375 DAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKV--VVVVLDIDNFTAI 432
+ + ++L ++ D LT L R F AL+D ++ + + + D+D F I
Sbjct: 130 ELMNTRDRLCELAETDTLTGLLNRGGFNTALADEIARCREPGMTAHPALAMFDLDGFKQI 189
Query: 433 NTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNK 492
N ++G GD VL +A L + D ++RLG D F V L V++ ++ RL
Sbjct: 190 NDVHGHHAGDIVLRAIASRLIELTHPDDPVSRLGGDEFAVILHRTLEDVSLERYMDRLQA 249
Query: 493 LFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXX 552
+ +P+ + + V SIG +V D + E + A AM+ AK+ GG + ++
Sbjct: 250 ILERPIDIETVTVSVAGSIG-AVLLDGTDTMEDVQKNADMAMYAAKRAGGKQSQMFTRNL 308
Query: 553 XXXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEF 611
F ++YQP ++ ++ EAL+RW+ ++ L+ +F
Sbjct: 309 RERAQARVSILSEARCGVERNQFEVYYQPIVNCNTMEVDQIEALLRWQHPERGLLAAEDF 368
Query: 612 IPLLEETGLMNEVGLIVLEKACRQLKEWHKKGIEI-EIAINISPAQFRSGEFLQSFLKDX 670
+ + GL +G ++E R + W++KG ++AIN+S ++ + +
Sbjct: 369 SDVFTDAGLAQAMGPRMIEAFRRDVCMWNEKGQPPRQLAINLSRMDLIRDDYQRELEESL 428
Query: 671 XXXXXXXXXXXXXXTETALV-ENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLP 729
TE L L+ L+ G R+ +D+FG G + + HL++LP
Sbjct: 429 RRFNMSPDSFVLEVTEAMLHGRRAEQGIRNLRELARAGFRIALDNFGKGITVLNHLRELP 488
Query: 730 VSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYA 789
S +KID V ++ N ++ +I++ ++ EGVE +++ L +
Sbjct: 489 FSQVKIDQSMVTNIVGNPDACMVLSSLIDMGQGFNMEVTVEGVENREQFELVKALRPERI 548
Query: 790 QGYYYSXXXXXXXXXXXXRKFNGL 813
QG++ S +F G+
Sbjct: 549 QGFFVSSALSSQDILKLPARFEGV 572
sp|Q04855|YNTC_AZOCA HYPOTHETICAL 80.5 KD PROTEIN IN NTRC 5'REGION (ORF1)
>gi|77475|pir||S18623 hypothetical protein 1 (ntrC 3'
region) - Azorhizobium caulinodans
>gi|38736|emb|CAA45329| (X63841) ORF1 [Azorhizobium
caulinodans]
Length = 735
Score = 138 bits (345), Expect = 1e-31
Identities = 117/443 (26%), Positives = 188/443 (42%), Gaps = 28/443 (6%)
Query: 361 QLIINFLEELSTAIDAITAHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVV 420
+L F+ ++S D IT+ LE++ F D T L R ++ + R + +
Sbjct: 292 RLFSAFVRDIS---DRITSRRALERLAFTDMHTGLSNRTGLLRLCTGRPT------RPSG 342
Query: 421 VVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVP 480
VVL + + + T +G + + +++E A+ L + L R G F V P
Sbjct: 343 AVVLMLRDLGVVKTSFGDDWAEPMIVETANLLSRMLPQEACLGRTGESEFTVVTW---QP 399
Query: 481 VAVNSFLARLNKLFSKPVIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQ-AMFEAKK 539
A L + G+ + +G+ P D Y L+ A A+
Sbjct: 400 GAAAELAETLIGRLRSAIESGGRRFYLRVGLGVVERPGDAT-------YLLRDAEMAARD 452
Query: 540 LGGNRVVYYSSXXXXXXXXXXXXXXXXXXXXX--XXXFILFYQPKIDLKEKKIVGCEALI 597
+++++ L YQP + + +VG EAL+
Sbjct: 453 CRDGHLLHFAEHMRAQHQQRLELEMALRDVIQRRTSALSLHYQPVVSARTGGLVGFEALV 512
Query: 598 RW-KKGDKLVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKEWHKKG-----IEIEIAIN 651
RW + V P F+PL E G +G V+E A W+ + IAIN
Sbjct: 513 RWYSETHGPVSPALFVPLAEAGGFAERLGAWVIETAISACAGWNVRRRAHGLAPWHIAIN 572
Query: 652 ISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVY 711
+S + + + ++ + TE+A++ +A L L LG
Sbjct: 573 LSATEVVAPDLIERVRQTMAFHGLPPQCVCFELTESAILNQPEIAIETLSRLRALGCTTA 632
Query: 712 IDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEG 771
IDDFGTGYSS+ +L++LP+ LKID FV DM N R EIV+ +I +AH LG+ VAEG
Sbjct: 633 IDDFGTGYSSLSYLQRLPMDVLKIDRSFVLDMVDNSRSREIVRVMIEMAHGLGMSVVAEG 692
Query: 772 VEKEIHEKMLMELSCDYAQGYYY 794
VE ++L ++ CD AQG+ +
Sbjct: 693 VETTGALQILRQMGCDRAQGFLF 715
sp|P37649|YHJK_ECOLI HYPOTHETICAL 73.1 KD PROTEIN IN DCTA-DPPF INTERGENIC REGION (F651)
>gi|1073470|pir||S47750 hypothetical protein f651 -
Escherichia coli >gi|466667 (U00039) No definition line
found [Escherichia coli] >gi|1789948 (AE000429) orf,
hypothetical protein [Escherichia coli]
Length = 651
Score = 137 bits (341), Expect = 4e-31
Identities = 94/356 (26%), Positives = 166/356 (46%), Gaps = 8/356 (2%)
Query: 444 VLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGK 503
+L+ + + L+ + ILA++ F V P + ++ + S+ + +
Sbjct: 284 LLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIMSERLPIERI 343
Query: 504 EIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXX 563
+++ SIG+++F D AE+L A+ A F A+ G N++ ++
Sbjct: 344 QLRPHCSIGVAMFYGDLT-AEQLYSRAISAAFTARHKGKNQIQFFDPQQMEAAQKRLTEE 402
Query: 564 XXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDKLVP-PYEFIPLLEETGLMN 622
F ++ QP++++ K+V E L+R ++ D P I +E GLM
Sbjct: 403 SDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLIDRIECCGLMV 462
Query: 623 EVGLIVLEKACRQLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXX 682
VG VLE++CR L W ++GI + +++N+S Q + L+
Sbjct: 463 TVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQLMHPNMVADMLELLTRYRIQPGTLIL 522
Query: 683 XXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYS---SILHLKQLPVSALKIDVEF 739
TE+ +++ A L+ L G+RV +DDFG GY+ + H+K LP+ LKID F
Sbjct: 523 EVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMF 582
Query: 740 VKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
V+ + D ++ +I LA SL L+ +AEGVE E L + AQG+ ++
Sbjct: 583 VEGL---PGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQGFLFA 635
sp|P32701|YJCC_ECOLI HYPOTHETICAL 60.8 KD PROTEIN IN SSB-SOXS INTERGENIC REGION (O528)
>gi|1790496 (AE000479) orf, hypothetical protein
[Escherichia coli]
Length = 528
Score = 134 bits (335), Expect = 2e-30
Identities = 75/220 (34%), Positives = 122/220 (55%), Gaps = 2/220 (0%)
Query: 577 LFYQPKIDLKEKKIVGCEALIRWK-KGDKLVPPYEFIPLLEETGLMNEVGLIVLEKACRQ 635
L+YQP ID+K +K +G EAL+RW + +++ P EFIPL E+ G++ ++ V++ R
Sbjct: 286 LYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRD 345
Query: 636 LKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSV 695
L ++ + ++IN+S + F + + + TE A ++ V
Sbjct: 346 LGDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLD-VDK 404
Query: 696 ATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKG 755
T + + + G V IDDFG GYS++ +LK L V LKID FV+ + ++ + I +
Sbjct: 405 MTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEH 464
Query: 756 VINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
+I LAHSLGLKT+AEGVE E L + Y QG++++
Sbjct: 465 IIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFA 504
gi|396396 (U00006) similar to Azorhizobium caulinodans hypoth. protein, ntrC
3' region [Escherichia coli]
Length = 528
Score = 134 bits (335), Expect = 2e-30
Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 2/220 (0%)
Query: 577 LFYQPKIDLKEKKIVGCEALIRWK-KGDKLVPPYEFIPLLEETGLMNEVGLIVLEKACRQ 635
L+YQP ID+K +K +G EAL+RW + +++ P EFIPL E+ G++ ++ V++ R
Sbjct: 286 LYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRD 345
Query: 636 LKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSV 695
L ++ + ++IN+S + F + + + TE A ++ V
Sbjct: 346 LGDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVXPQQIKFEVTEHAFLD-VDK 404
Query: 696 ATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKG 755
T + + + G V IDDFG GYS++ +LK L V LKID FV+ + ++ + I +
Sbjct: 405 MTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEH 464
Query: 756 VINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
+I LAHSLGLKT+AEGVE E L + Y QG++++
Sbjct: 465 IIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFA 504
gb|AAF10326.1|AE001930_7 (AE001930) sensory box/GGDEF family protein [Deinococcus
radiodurans]
Length = 939
Score = 134 bits (334), Expect = 3e-30
Identities = 117/423 (27%), Positives = 184/423 (42%), Gaps = 24/423 (5%)
Query: 379 AHEKLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGT 438
A KL D LT L R L L A + +V LDID F +N
Sbjct: 514 AQAKLRHDASHDGLTGLLNR----SGLRAALGQATAAQTGGMVACLDIDGFGGLNAALSR 569
Query: 439 EVGDKVLIEVADSLRDSVRI-GDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKP 497
GD +LI+VA L D + G ARL DTF V L V A L + P
Sbjct: 570 TAGDLLLIQVAARLNDLAELEGGQAARLADDTFAVYLPQLGAAVGGQKLQAALRE----P 625
Query: 498 VIVNGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYS----SXXX 553
+ + + VTFS+G + P E+ L A A+ A++ G ++ + +
Sbjct: 626 LRTGKRLVPVTFSLGAA--PLLAAAPEQALADAEVALQHARRQGRGQLTVFEPDMRAEEA 683
Query: 554 XXXXXXXXXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFI 612
F L YQP + LK+ +++G EAL+RW + V P F+
Sbjct: 684 QTFELEDQLRAVLDRGLQHEQFSLLYQPAVSLKDGRVLGAEALLRWTHPELGNVSPARFL 743
Query: 613 PLLEETGLMNEVGLIVLEKACR---QLKEWHKKGIEIEIAINISPAQFRSGEFLQSFLKD 669
PL + + L+ +G V+ +A + QL++ + ++N+S + R ++ L
Sbjct: 744 PLAQRSDLITSIGEWVVREAVQGRTQLRDATGQR-NWRTSVNLSLEELRREGAIERLLP- 801
Query: 670 XXXXXXXXXXXXXXXTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLP 729
+ ++L+++ L +L G R+ +DDFG G SS+ L Q P
Sbjct: 802 ---LITRPSALDIEVSASSLLDHSEETLGLLDALRARGARLIVDDFGDGASSLTALTQFP 858
Query: 730 VSALKIDVEFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYA 789
+ +K+ + +++ ++V+G ++LAHSLGL A GVE ML +L CD A
Sbjct: 859 LYGVKLHPTLTTRLPGDQKSLKLVQGTVSLAHSLGLTVTAVGVETYAQLDMLRDLGCDAA 918
Query: 790 QGY 792
QGY
Sbjct: 919 QGY 921
gi|2655361 (AF034831) ORF1 [Rhizobium etli]
Length = 798
Score = 129 bits (320), Expect = 1e-28
Identities = 107/432 (24%), Positives = 195/432 (44%), Gaps = 18/432 (4%)
Query: 343 EKYYLTLSKEEEFYPAEVQLIINFLEELSTAIDAITAHEKLEKIEFFDKLTRLPTRIFFV 402
E+ ++ + + E E + ++++S + + ++L + D LT L R +
Sbjct: 373 EERWIRVVSDIERLNGEPSRLFGIVQDVS---EKVRYEQRLLQAANVDSLTGLANRAAY- 428
Query: 403 KALSDRLSIAAQERKKVVVVVLDIDNFTAINTLYGTEVGDKVLIEVADSLRDSVRIGDIL 462
A +RL+ A + + ++++D+D +N + G GD +L VA L + + +
Sbjct: 429 NAHMERLTAA--DAPSIGLLLIDVDRLKQVNDILGHATGDLLLKGVASRLDERLGKRGKV 486
Query: 463 ARLGADTFGVALTCADVPVAVN---SFLARLNKLFSKPVIVNGKEIQVTFSIGISVFPDD 519
RLG D F V L D P +V S L + +P+ V G I T ++G ++ +
Sbjct: 487 FRLGGDEFSVVL---DAPASVRRMGSLARHLIEYIGRPLQVAGSTINPTITVGGAI-SEG 542
Query: 520 GNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXXXXXXXXXXXXXXXXFILFY 579
+A L A A++ AK+ V+Y + Y
Sbjct: 543 MMDAATLSQNADFALYHAKETRRGSYVHYEPSLRSRIARRIQIVREVEAALTEHRMVPHY 602
Query: 580 QPKIDLKEKKIVGCEALIRWKKGD-KLVPPYEFIPLLEETGLMNEVGLIVLEKACRQLKE 638
QP + + ++ EAL+R ++ D +V + + + + + +LE+ ++
Sbjct: 603 QPIVGSADGQVWAFEALVRMQRPDGSIVSAAQLHEAFTDPSVTHHITTRMLEQVAVDIRR 662
Query: 639 WHKKGIEI-EIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENV--SV 695
W +G+E + +NIS + F G+ + TET ++ + +V
Sbjct: 663 WIDRGLEFGRVGLNISASDFMRGDLETRIVAAFASRGIPLDKLVLEVTETVFLQGLEDTV 722
Query: 696 ATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKG 755
AT L+ L + G+ V +DDFGTGY+S+ HL+ LPV +KID F+ M V+E IV+
Sbjct: 723 ATT-LQRLRKKGLTVALDDFGTGYASLTHLRCLPVDIIKIDKSFIDTMLVDESSLAIVEL 781
Query: 756 VINLAHSLGLKT 767
V+NLA LG ++
Sbjct: 782 VLNLARKLGYES 793
dbj|BAA78792.1| (AP000342) 99% identical to gp:ECOMERTET_4[urf2, putative ORF, gene
product of plasmid R100] [Plasmid R100]
Length = 235
Score = 125 bits (312), Expect = 1e-27
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 577 LFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQ 635
L YQP +DL++ +I G EAL+RW+ L+PP +F+PL E GLM E+G VL +ACRQ
Sbjct: 25 LHYQPLVDLRDHRIAGAEALMRWRHPRLGLLPPGQFLPLAESFGLMPEIGAWVLGEACRQ 84
Query: 636 LKEWHKKGIE-IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVS 694
+ +W + +AIN+S +Q F + TE+ N +
Sbjct: 85 MHKWQGPAWQPFRLAINVSASQV-GPTFDDEVKRVLADMALPAELLEIELTESVAFGNPA 143
Query: 695 VATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVK 754
+ F +L +G+R DDFGTGYS + HLK P++ LKID FV + + RD IV+
Sbjct: 144 LFASF-DALRAIGVRFAADDFGTGYSCLQHLKCCPITTLKIDQSFVARLPDDARDQTIVR 202
Query: 755 GVINLAHSLGLKTV 768
VI LAH LG+ +
Sbjct: 203 AVIQLAHGLGMDVI 216
gb|AAC33923.1| (AF071413) unknown [Escherichia coli]
Length = 235
Score = 125 bits (311), Expect = 1e-27
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 577 LFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQ 635
L YQP +DL++ + VG EAL+RW+ L+PP +F+PL E GLM E+G VL +ACRQ
Sbjct: 25 LHYQPLVDLRDHRTVGAEALMRWRHPRLGLLPPGQFLPLAESFGLMPEIGAWVLGEACRQ 84
Query: 636 LKEWHKKGIE-IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVS 694
+ +W + +AIN+S +Q F + TE+ N +
Sbjct: 85 MHKWQGPAWQPFRLAINVSASQV-GPTFDDEVKRVLADMALPAELLEIELTESVAFGNPA 143
Query: 695 VATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVK 754
+ F +L +G+R DDFGTGYS + HLK P++ LKID FV + + RD IV+
Sbjct: 144 LFASF-DALRAIGVRFAADDFGTGYSCLQHLKCCPITTLKIDQSFVARLPDDARDQTIVR 202
Query: 755 GVINLAHSLGLKTV 768
VI LAH LG+ +
Sbjct: 203 AVIQLAHGLGMDVI 216
pir||B29503 hypothetical protein (mercuric resistance operon) - Shigella
flexneri plasmid R100
Length = 224
Score = 125 bits (311), Expect = 1e-27
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 577 LFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQ 635
L YQP +DL++ + VG EAL+RW+ L+PP +F+PL E GLM E+G VL +ACRQ
Sbjct: 25 LHYQPLVDLRDHRTVGAEALMRWRHPRLGLLPPGQFLPLAESFGLMPEIGAWVLGEACRQ 84
Query: 636 LKEWHKKGIE-IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVS 694
+ +W + +AIN+S +Q F + TE+ N +
Sbjct: 85 MHKWQGPAWQPFRLAINVSASQV-GPTFDDEVKRVLADMALPAELLEIELTESVAFGNPA 143
Query: 695 VATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVK 754
+ F +L +G+R DDFGTGYS + HLK P++ LKID FV + + RD IV+
Sbjct: 144 LFASF-DALRAIGVRFAADDFGTGYSCLQHLKCCPITTLKIDQSFVARLPDDARDQTIVR 202
Query: 755 GVINLAHSLGLKTV 768
VI LAH LG+ +
Sbjct: 203 AVIQLAHGLGMDVI 216
gi|460275 (L29404) URF2; putative [Escherichia coli]
Length = 235
Score = 125 bits (310), Expect = 2e-27
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 577 LFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQ 635
L YQP +DL++ +I G EAL+RW+ L+PP +F+PL E GLM E+G VL +ACRQ
Sbjct: 25 LHYQPLVDLRDHRIAGAEALMRWRHPRLGLLPPGQFLPLAESFGLMPEIGAWVLGEACRQ 84
Query: 636 LKEWHKKGIE-IEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVS 694
+ +W + +AIN+S +Q F + TE+ N +
Sbjct: 85 MHKWQGPAWQPFRLAINVSASQV-GPTFDDEVKRVLADMALPAELLEIELTESLAFGNPA 143
Query: 695 VATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVK 754
+ F +L +G+R DDFGTGYS + HLK P++ LKID FV + + RD IV+
Sbjct: 144 LFASF-DALRAIGLRFAADDFGTGYSCLQHLKCCPITTLKIDQSFVARLPDDARDQTIVR 202
Query: 755 GVINLAHSLGLKTV 768
VI LAH LG+ +
Sbjct: 203 AVIQLAHGLGMDVI 216
gi|3659615 (AF052517) diguanylate cyclase [Acetobacter xylinus]
Length = 580
Score = 124 bits (308), Expect = 3e-27
Identities = 111/478 (23%), Positives = 197/478 (40%), Gaps = 13/478 (2%)
Query: 325 IKKGKMGEYSVCFKLKSKEKYYLT---LSKEEEFYPAEVQLIINFLEELSTAIDAITAHE 381
I+ G++ ++C + K Y++ + K E + F + + +
Sbjct: 82 IRGGEIWRGNICNRAKDGTLYWVATTIMPKHNSLGAVEGYVATRF-----EITELMNTRD 136
Query: 382 KLEKIEFFDKLTRLPTRIFFVKALSDRLSIAAQE-RKKVVVVVLDIDNFTAINTLYGTEV 440
+L+ + D LT L R F L + +Q + +++V+ D+D F IN ++G
Sbjct: 137 RLKSLAATDPLTGLFNRGGFNNVLQTAVEDKSQNITRDIMLVMFDLDGFKQINDIHGHHA 196
Query: 441 GDKVLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIV 500
GD VL +++ L V D + RLG D F + L ++ L +L P+ V
Sbjct: 197 GDVVLKVISNRLLALVHPEDAVCRLGGDEFALILNHTLHKFPLSLMLEKLLAELEAPIEV 256
Query: 501 NGKEIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSXXXXXXXXXX 560
+ V+ SIG++ AE L A A++ AK+ GG++ +
Sbjct: 257 GNTMVNVSGSIGVTPIASQ-ESAESLQKNADIALYAAKRAGGHQARMFDMTLHQHALERA 315
Query: 561 XXXXXXXXXXXXXXFILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETG 619
F L+YQP ++ K EAL+RW + L+ F + +
Sbjct: 316 QILNDAREGVMKDQFELYYQPIMNFSTGKCDQIEALLRWHHPQRGLLAAESFRDVFLDAA 375
Query: 620 LMNEVGLIVLEKACRQLKEWHKK-GIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXX 678
L + +++ ++ W+ + IN+S + F +
Sbjct: 376 LAQVMSPRLVKSFQNDMRMWNTSLDAYPNLTINLSRLDLLNIGFQNDLEAEIKRQGGKAA 435
Query: 679 XXXXXXTETALVENVSVATLF-LKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDV 737
+E+ L S L L+ LSELG ++ +DDFG I L+ + + KI
Sbjct: 436 DYVLEISESVLAGRRSDRVLQRLQELSELGFQLTLDDFGLATLPISVLRTISFTQAKISR 495
Query: 738 EFVKDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
+ VKD++ + + +V +I LAH+ GL GVE + ++L E+ D QG+Y S
Sbjct: 496 KLVKDIETSPQARGVVAHLIGLAHAFGLSVTVSGVETKGQMEVLREMGADRIQGFYIS 553
dbj|BAA10527| (D64003) hypothetical protein [Synechocystis sp.]
Length = 404
Score = 121 bits (301), Expect = 2e-26
Identities = 72/223 (32%), Positives = 114/223 (50%), Gaps = 3/223 (1%)
Query: 575 FILFYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKAC 633
F L YQP + + + +I G EALIRW+ + V P FI + E T L+ +G V+E+
Sbjct: 166 FHLVYQPIVFMDDLRIEGFEALIRWQSPKRGFVRPDRFIEVAEATDLIIPIGQWVIEQGL 225
Query: 634 RQLKEWHKK-GIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVEN 692
+ LK + K + ++ NI Q S +F+ L+ E L
Sbjct: 226 KDLKTFQTKFNPHLLMSFNIVGRQTNSEDFVPWLLEKVDHYGLTPDKVKLEIIERTLFSG 285
Query: 693 VSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEI 752
S A ++++ G + +DDFGTGYSS+ +L + + +KID FV + N+ I
Sbjct: 286 ESSAP-WIENCRSQGFALVLDDFGTGYSSLQYLNEYKIDRVKIDKSFVDGLGTNQNSESI 344
Query: 753 VKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795
++ L+H+LG+ VAEG+E + ++L L CDY QGY +S
Sbjct: 345 CSAILQLSHALGMTVVAEGIETQAQLEILQSLGCDYGQGYLFS 387
gi|2688273 (AE001142) periplasmic protein [Borrelia burgdorferi]
Length = 670
Score = 115 bits (286), Expect = 1e-24
Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
Query: 575 FILFYQPKIDLKEKKIVGCEALIR-WKKGDKLVPPYEFIPLLEETGLMNEVGLIVLEKAC 633
F L+YQ LK+ E L R + K +P + L+++ L EV +V++KA
Sbjct: 444 FTLYYQKINPLKKNLKPKIEILTRLFDHMGKPIPNNQIFNLIDKYNLTVEVDTLVVKKAL 503
Query: 634 RQLKEW-HKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXX-XXXTETALVE 691
R+ K + K GI I +INISP +S F + FL+D TET ++E
Sbjct: 504 REYKSFVSKNGIHI-FSINISPYSLKSQNF-RIFLRDTLLKSQIPLQNICLEITETGILE 561
Query: 692 NVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYE 751
N + + + L GI++ +DDFG+G++S+ ++K LP+ LKID F+K ++ +E D+
Sbjct: 562 NFEIINKYFQELKSFGIKLALDDFGSGHTSLSYIKTLPIDLLKIDGSFIKAINSSEIDFV 621
Query: 752 IVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYY 794
I+K + +A + +K +AE V E K ++EL DY QG+ +
Sbjct: 622 IIKSIKKIADTKNIKIIAEFVYNEEILKKIIELEIDYGQGFLW 664
gi|3123891 (AF031552) response regulator [Vibrio cholerae]
Length = 584
Score = 114 bits (283), Expect = 3e-24
Identities = 73/217 (33%), Positives = 109/217 (49%), Gaps = 5/217 (2%)
Query: 578 FYQPKIDLKEKKIVGCEALIRWKKGDK-LVPPYEFIPLLEETGLMNEVGLIVLEKACRQL 636
+YQP+ D + +VG EAL+R++ ++ P F+PL+E+ GL ++ L VLEK+ L
Sbjct: 154 YYQPQFDFRSGAMVGVEALVRYEHPTHGMLSPAVFLPLIEQCGLHEKLFLTVLEKSVSAL 213
Query: 637 KEWHKKGIEIEIAINISPAQFRSGEFLQSFLKDXXXXXXXXXXXXXXXTETALVENVSVA 696
G ++++++NIS + L TE + +
Sbjct: 214 ASI---GADLQLSVNISQRNLQHS-ICDPILAICERYGFPASKLTLEMTEHEVYNGTPTS 269
Query: 697 TLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFVKDMDVNERDYEIVKGV 756
L L G+ + IDDFGTGY+S+ L QLP + LKID FV D+ N + ++
Sbjct: 270 LANLARLRMYGVGLSIDDFGTGYASLGQLAQLPFTELKIDRSFVHDLATNYKHQQLTNMC 329
Query: 757 INLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYY 793
+ LA SLGL V EGVE E + L +L D QGYY
Sbjct: 330 LLLAQSLGLHCVVEGVENEETWQYLRQLGVDTCQGYY 366
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.320 0.140 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183753228
Number of Sequences: 444417
Number of extensions: 7080289
Number of successful extensions: 19365
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 18917
Number of HSP's gapped (non-prelim): 228
length of query: 814
length of database: 136,724,657
effective HSP length: 59
effective length of query: 755
effective length of database: 110,504,054
effective search space: 83430560770
effective search space used: 83430560770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 74 (33.2 bits)
