Score E
Sequences producing significant alignments: (bits) Value
gi|2983617 (AE000726) hydrogenase regulation HoxX [Aquifex ... 1170 0.0
pir||B55513 hoxX protein - Alcaligenes eutrophus >gi|516859... 522 e-147
sp|P31907|HOXX_BRAJA PROBABLE SENSOR PROTEIN HOXX >gi|48675... 508 e-143
emb|CAA85446| (Z36982) HOXX [Rhizobium leguminosarum] >gi|1... 503 e-141
gi|3372358 (AF042490) 4-chlorobenzoyl CoA dehalogenase [Art... 71 3e-11
pir||A48956 4-chlorobenzoate-CoA dehalogenase - Arthrobacte... 70 5e-11
sp|O67890|FMT_AQUAE METHIONYL-TRNA FORMYLTRANSFERASE >gi|29... 66 8e-10
gi|2649635 (AE001038) enoyl-CoA hydratase (fad-3) [Archaeog... 66 1e-09
emb|CAB12828| (Z99109) similar to 3-hydroxbutyryl-CoA dehyd... 66 1e-09
sp|P43523|FMT_THETH METHIONYL-TRNA FORMYLTRANSFERASE >gi|10... 62 9e-09
sp|Q9WYZ8|FMT_THEMA METHIONYL-TRNA FORMYLTRANSFERASE >gi|49... 61 4e-08
gb|AAD18041| (AF123253) AIM1 protein [Arabidopsis thaliana]... 59 1e-07
emb|CAA74425| (Y14078) Hypothetical protein [Bacillus subti... 57 3e-07
sp|P28037|FTDH_RAT 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE ... 57 4e-07
pir||A60560 formyltetrahydrofolate dehydrogenase (EC 1.5.1.... 57 4e-07
sp|P94463|FMT_BACSU METHIONYL-TRNA FORMYLTRANSFERASE >gi|23... 57 5e-07
gi|2226378 (AF006493) ACBP/ECHM [Cyprinus carpio] 57 5e-07
emb|CAA55630| (X78996) tetrafunctional protein [Cucumis sat... 57 5e-07
emb|CAA71350| (Y10304) Met-tRNAi formyl transferase [Bacill... 55 1e-06
gi|2293148 (AF008220) dihydroxynaphthoate synthase [Bacillu... 55 2e-06
emb|CAA99573.1| (Z75208) hypothetical protein [Bacillus sub... 55 2e-06
gb|AAD34174.1|AF153613_1 (AF153613) peroxisomal D3,D2-enoyl... 55 2e-06
emb|CAA04386| (AJ000886) Tetrafunctional protein of glyoxys... 55 2e-06
gb|AAF11976.1|AE002073_6 (AE002073) methionyl-tRNA formyltr... 54 3e-06
emb|CAA92957.1| (Z68748) Similarity to Rat Formyltetrahydro... 54 3e-06
dbj|BAA75329.1| (AB011837) enoyl CoA hydratase [Bacillus ha... 53 5e-06
gb|AAD18042| (AF123254) MFP2 [Arabidopsis thaliana] 53 5e-06
pir||A42560 4-chlorobenzoate dehalogenase (EC 3.8.1.6), 30K... 53 5e-06
pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase... 53 8e-06
sp|Q9ZK72|FMT_HELPJ METHIONYL-TRNA FORMYLTRANSFERASE >gi|41... 52 1e-05
pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase... 52 1e-05
gb|AAC05576.1| (AF051771) 4-chlorobenzoyl CoA dehalogenase ... 51 2e-05
emb|CAB53329.1| (AL109974) putative formyltransferase [Stre... 50 4e-05
emb|CAA74218| (Y13917) yngF [Bacillus subtilis] >gi|2634205... 50 5e-05
ref|NP_001957.1|| enoyl-Coenzyme A, hydratase/3-hydroxyacyl... 50 5e-05
sp|O75891|FTDH_HUMAN 10-FORMYLTETRAHYDROFOLATE DEHYDROGENAS... 50 7e-05
gb|AAF11052.1|AE001993_2 (AE001993) enoyl-CoA hydratase/3,2... 49 9e-05
pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected A... 48 2e-04
sp|P14604|ECHM_RAT ENOYL-COA HYDRATASE, MITOCHONDRIAL PRECU... 48 2e-04
emb|CAB40698.1| (AL049587) putative enoyl coA hydratase [St... 48 2e-04
ref|NP_006108.1|| peroxisomal D3,D2-enoyl-CoA isomerase >gi... 48 3e-04
gi|3253198 (AF029714) PhaB [Pseudomonas putida] 48 3e-04
dbj|BAA75330.1| (AB011837) enoyl CoA hydratase [Bacillus ha... 46 6e-04
emb|CAB07495| (Z92974) crotonase [Thermoanaerobacterium the... 46 6e-04
dbj|BAA17535| (D90906) naphthoate synthase [Synechocystis sp.] 46 6e-04
emb|CAA16000| (AL021184) echA12 [Mycobacterium tuberculosis] 46 8e-04
sp|P55100|ECHP_CAVPO PEROXISOMAL BIFUNCTONAL ENZYME (PBE) (... 46 0.001
sp|P34559|ECHM_CAEEL PROBABLE ENOYL-COA HYDRATASE, MITOCHON... 46 0.001
dbj|BAA78965.1| (AP000058) 253aa long hypothetical enoyl-Co... 45 0.001
sp|O83737|FMT_TREPA METHIONYL-TRNA FORMYLTRANSFERASE >gi|33... 45 0.001
gb|AAC02616.1| (AF045646) contains similarity to enoly-CoA ... 45 0.001
gi|3243085 (U75363) 2-ketocyclohexanecarboxyl-CoA hydrolase... 45 0.002
sp|O75521|DRS1_HUMAN DBI-RELATED PROTEIN 1 (DRS-1) >gi|3193... 45 0.002
sp|O84535|FMT_CHLTR METHIONYL-TRNA FORMYLTRANSFERASE >gi|33... 45 0.002
gi|2650351 (AE001085) 3-hydroxyacyl-CoA dehydrogenase (hbd-... 45 0.002
gi|2650190 (AE001074) enoyl-CoA hydratase (fad-1) [Archaeog... 45 0.002
emb|CAB10222.1| (Z97336) carnitine racemase like protein [A... 45 0.002
dbj|BAA89256.1| (AB024693) OrfF [Leptospira interrogans ser... 44 0.003
gi|2650660 (AE001107) enoyl-CoA hydratase (fad-5) [Archaeog... 44 0.003
emb|CAB10400.1| (Z97340) enoyl-CoA hydratase like protein [... 44 0.003
gb|AAF12988.1|AF022186_111 (AF022186) unknown; naphthoate s... 44 0.004
dbj|BAA75325.1| (AB011837) enoyl CoA hydratase [Bacillus ha... 44 0.004
pir||S60888 ferric exochelin biosynthesis protein fxbA - My... 44 0.004
sp|P23966|MENB_BACSU NAPHTHOATE SYNTHASE (DIHYDROXYNAPHTHOI... 44 0.004
sp|P40802|PKSI_BACSU PUTATIVE POLYKETIDE BIOSYNTHESIS ENOYL... 44 0.004
emb|CAB10223.1| (Z97336) carnitine racemase like protein [A... 43 0.005
sp|P30084|ECHM_HUMAN ENOYL-COA HYDRATASE, MITOCHONDRIAL PRE... 43 0.005
sp|Q55163|FMT_SYNY3 METHIONYL-TRNA FORMYLTRANSFERASE >gi|10... 43 0.005
ref|NP_001689.1|| AU RNA-binding protein/enoyl-Coenzyme A h... 43 0.005
sp|O52325|YFBG_SALTY HYPOTHETICAL 73.6 KD PROTEIN IN AIS-PM... 43 0.007
sp|P56461|FMT_HELPY METHIONYL-TRNA FORMYLTRANSFERASE >gi|23... 43 0.007
sp|P07896|ECHP_RAT PEROXISOMAL BIFUNCTONAL ENZYME (PBE) (PB... 43 0.009
sp|P24162|ECHH_RHOCA PROBABLE ENOYL-COA HYDRATASE >gi|97441... 43 0.009
gb|AAF12051.1|AE002080_5 (AE002080) enoyl-CoA hydratase, pu... 42 0.011
emb|CAB61356.1| (AL133015) hypothetical protein [Homo sapiens] 42 0.011
emb|CAB57648.1| (Y18930) hypothetical protein [Sulfolobus s... 42 0.011
sp|P47605|FMT_MYCGE METHIONYL-TRNA FORMYLTRANSFERASE >gi|13... 42 0.011
sp|P44960|MENB_HAEIN NAPHTHOATE SYNTHASE (DIHYDROXYNAPHTHOI... 42 0.015
sp|P27290|MENB_ECOLI NAPHTHOATE SYNTHASE (DIHYDROXYNAPHTHOI... 42 0.015
ref|NP_004815.1|| chromodomain protein, Y chromosome-like >... 41 0.020
gi|2648909 (AE000989) enoyl-CoA hydratase (fad-4) [Archaeog... 41 0.020
gi|2290997 (AF006000) unknown [Bordetella pertussis] 41 0.020
gb|AAF10723.1|AE001964_7 (AE001964) 3-hydroxybutyryl-CoA de... 41 0.026
gi|3046310 (U75363) cyclohex-1-ene-1-carboxyl-CoA hydratase... 41 0.026
pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Fr... 41 0.026
sp|P23882|FMT_ECOLI METHIONYL-TRNA FORMYLTRANSFERASE >gi|96... 41 0.026
ref|NP_004816.1|| chromodomain protein, Y chromosome, 2 >gi... 41 0.033
gb|AAD22732.1|AF080597_1 (AF080597) testis-specific chromod... 41 0.033
ref|NP_004671.1|| chromodomain protein, Y chromosome, 1 >gi... 41 0.033
sp|O87726|FMT_VIBAL METHIONYL-TRNA FORMYLTRANSFERASE >gi|32... 41 0.033
gi|2650633 (AE001105) 3-hydroxyacyl-CoA dehydrogenase (hbd-... 41 0.033
emb|CAA55910| (X79365) protein MFP-b [Cucumis sativus] 41 0.033
emb|CAB61740.1| (AJ275305) putative enoyl CoA hydratase [Ci... 40 0.044
dbj|BAA83941.1| (AB024560) unknown [Bacillus halodurans] 40 0.044
gb|AAD22736.1|AF081260_1 (AF081260) testis-specific chromod... 40 0.044
emb|CAA07640.1| (AJ007747) putative formyl transferase [Bor... 40 0.044
sp|O51091|FMT_BORBU METHIONYL-TRNA FORMYLTRANSFERASE >gi|26... 40 0.044
sp|P53526|ECHH_MYCLE PUTATIVE ENOYL-COA HYDRATASE >gi|21459... 40 0.044
gb|AAC77915.1| (AF063588) enoyl CoA hydratase [Rhodococcus ... 39 0.075
emb|CAA66095| (X97452) enoyl-CoA hydratase [Escherichia coli] 39 0.075
gi|2983617 (AE000726) hydrogenase regulation HoxX [Aquifex aeolicus]
Length = 562
Score = 1170 bits (2993), Expect = 0.0
Identities = 562/562 (100%), Positives = 562/562 (100%)
Query: 1 MRILFLSYRFNSLSQRLYCELTEREHEVSVELDVHPDLTVEAAELYKPDLIIAPFLKRKI 60
MRILFLSYRFNSLSQRLYCELTEREHEVSVELDVHPDLTVEAAELYKPDLIIAPFLKRKI
Sbjct: 1 MRILFLSYRFNSLSQRLYCELTEREHEVSVELDVHPDLTVEAAELYKPDLIIAPFLKRKI 60
Query: 61 PQEVWKKYKTLIIHPGPPGDRGPNALDWAIMKGERIWGVTLLEASEEYDAGDVWAYRTFP 120
PQEVWKKYKTLIIHPGPPGDRGPNALDWAIMKGERIWGVTLLEASEEYDAGDVWAYRTFP
Sbjct: 61 PQEVWKKYKTLIIHPGPPGDRGPNALDWAIMKGERIWGVTLLEASEEYDAGDVWAYRTFP 120
Query: 121 MRFARKASIYRNEVTEGVVECVLEALENFERGDFKPTPQKEHWWNPKMEQELRRVDWEQD 180
MRFARKASIYRNEVTEGVVECVLEALENFERGDFKPTPQKEHWWNPKMEQELRRVDWEQD
Sbjct: 121 MRFARKASIYRNEVTEGVVECVLEALENFERGDFKPTPQKEHWWNPKMEQELRRVDWEQD 180
Query: 181 DTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEELKGKPGEVLALRDEAVCIGTRDG 240
DTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEELKGKPGEVLALRDEAVCIGTRDG
Sbjct: 181 DTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEELKGKPGEVLALRDEAVCIGTRDG 240
Query: 241 AVWITHMRERKKESIKLPSARVLGEFLKGVKEDPIKPWEKVDFKTYREILYEEEDGIGFI 300
AVWITHMRERKKESIKLPSARVLGEFLKGVKEDPIKPWEKVDFKTYREILYEEEDGIGFI
Sbjct: 241 AVWITHMRERKKESIKLPSARVLGEFLKGVKEDPIKPWEKVDFKTYREILYEEEDGIGFI 300
Query: 301 HFNFYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMNLNTIENAESPADES 360
HFNFYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMNLNTIENAESPADES
Sbjct: 301 HFNFYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMNLNTIENAESPADES 360
Query: 361 WRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIG 420
WRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIG
Sbjct: 361 WRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIG 420
Query: 421 NLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFGKTPKEFRQRLKER 480
NLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFGKTPKEFRQRLKER
Sbjct: 421 NLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFGKTPKEFRQRLKER 480
Query: 481 IKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHELEKMKLNFYGFDTSYHIARYYFV 540
IKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHELEKMKLNFYGFDTSYHIARYYFV
Sbjct: 481 IKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHELEKMKLNFYGFDTSYHIARYYFV 540
Query: 541 RRKPHFRTPPYLAIHRRLKFSL 562
RRKPHFRTPPYLAIHRRLKFSL
Sbjct: 541 RRKPHFRTPPYLAIHRRLKFSL 562
pir||B55513 hoxX protein - Alcaligenes eutrophus >gi|516859|emb|CAA52735|
(X74670) HoxX [Ralstonia eutropha]
Length = 597
Score = 522 bits (1331), Expect = e-147
Identities = 276/584 (47%), Positives = 376/584 (64%), Gaps = 33/584 (5%)
Query: 1 MRILFLSYRFNSLSQRLYCELTEREHEVSVELDVHPDLTVEAAELYKPDLIIAPFLKRKI 60
MRIL L++ FNSL+QRL+ EL +R H VSVE D+ +T EA L+ PDL+IAPFLKR I
Sbjct: 1 MRILLLTHSFNSLTQRLFVELRQRGHLVSVEFDIADSVTEEAVALFAPDLVIAPFLKRAI 60
Query: 61 PQEVWKKYKTLIIHPGPPGDRGPNALDWAIMKGERIWGVTLLEASEEYDAGDVWAYRTFP 120
P+ +W + L++HPG GDRGP+ALDWAI++ ER WGVT+L+A+ E DAG VWA TFP
Sbjct: 61 PERIWSRLVCLVVHPGIVGDRGPSALDWAIVRDERSWGVTVLQANGEMDAGPVWASATFP 120
Query: 121 MRFARKASIYRNEVTEGVVECVLEALENFERG-----DFKPTPQKEHWWNPKMEQELRRV 175
MR ARK+S+YRNEVT V+ VLEAL FE G D + P WNP M Q R +
Sbjct: 121 MRAARKSSLYRNEVTVAAVQAVLEALAAFEAGWRSANDAQSGPGT---WNPAMRQAERGI 177
Query: 176 DWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEEL------KGKPGEVLALR 229
DW ++ T VL K++A+DS PG + G+ LF+A+ +G+PG+++A R
Sbjct: 178 DWARESTAAVLAKLHAADSFPGVPDALFGQPCRLFDAHAATPQTVARAPRGQPGDIVARR 237
Query: 230 DEAVCIGTRDGAVWITHMRERKKE--------SIKLPSARVLGEFLKGVKEDPIKPWEKV 281
+ AV T D VWI H + ++ S+KLP A+V E + + + P E
Sbjct: 238 EHAVLRLTVDAGVWIGHAKLAVRDEWENTSLPSLKLPVAQVFHEAWAQLPDLSL-PLEH- 295
Query: 282 DFKTYREILYEEEDG----IGFIHFNFYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGS 337
D + E Y E+D +G++ F+ YNGAMST QC RL ++YA+ R + +VLLG
Sbjct: 296 DAGEWSEFRYWEDDSGAGLVGYLAFDCYNGAMSTAQCQRLCAALRYARGRQTRVLVLLGG 355
Query: 338 EDFFSNGMNLNTIE-----NAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGA 392
EDFFSNG++L+ IE AES AD SWRNI A+DDV EIL D++TV+ ++GNAGA
Sbjct: 356 EDFFSNGIHLHQIEAAEHRGAESAADASWRNIQAMDDVALEILAFSDRMTVSALRGNAGA 415
Query: 393 GGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPIS 452
GGVFLAL D V+AREGV++NPHYKN+GNLYGSE+WTY LP+RVG ++ ++M+ R+P+S
Sbjct: 416 GGVFLALAADQVWAREGVLVNPHYKNMGNLYGSEYWTYLLPQRVGAQRASDLMDGRLPMS 475
Query: 453 SKKAFEIGLIDGVFGKTPKEFRQRLKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQK 512
++A EIGLID + + R + D+ I+ K+++R + E + + +
Sbjct: 476 VRRAIEIGLIDASLDGDARSCLAEIGRRAVALARAPDYAAHIDNKRRKRAADEAAKPLAQ 535
Query: 513 CREHELEKMKLNFYGFDTSYHIARYYFVRRKPHFRTPPYLAIHR 556
RE EL M NFYGFD SYH+ARY+FV + PH TP +LA+HR
Sbjct: 536 YREEELVHMHRNFYGFDPSYHVARYHFVYKLPHAHTPRHLAMHR 579
sp|P31907|HOXX_BRAJA PROBABLE SENSOR PROTEIN HOXX >gi|486754|pir||S35231 hoxX protein -
Bradyrhizobium japonicum >gi|39537|emb|CAA78990.1|
(Z17373) hoxX [Bradyrhizobium japonicum]
>gi|448284|prf||1916405C hoxX gene [Bradyrhizobium
japonicum]
Length = 566
Score = 508 bits (1293), Expect = e-143
Identities = 261/562 (46%), Positives = 361/562 (63%), Gaps = 17/562 (3%)
Query: 1 MRILFLSYRFNSLSQRLYCELTEREHEVSVELDVHPDLTVEAAELYKPDLIIAPFLKRKI 60
MRIL LS+ FNSL+QRL+ EL ER HEVSVELD+H D+T E+ L++PDL+IAPFLKR I
Sbjct: 1 MRILLLSHSFNSLTQRLHVELRERGHEVSVELDIHADVTRESVALHRPDLVIAPFLKRAI 60
Query: 61 PQEVWKKYKTLIIHPGPPGDRGPNALDWAIMKGERIWGVTLLEASEEYDAGDVWAYRTFP 120
P +VW+ + L++HPGPPGDRGP ALDWA+++G WGVT+L+A E+DAG VWA+R+FP
Sbjct: 61 PDDVWRSVRCLVVHPGPPGDRGPAALDWAVLEGVAEWGVTVLQADGEFDAGPVWAFRSFP 120
Query: 121 MRFARKASIYRNEVTEGVVECVLEALENFERGDFKPTPQKEHWWNPKM------EQELRR 174
MR A K+SIYRNE+T V VLEA+ E G P P + +P++ Q R
Sbjct: 121 MRRAAKSSIYRNELTSCAVAAVLEAVAAIEAGQAAPQPMQV--GDPRIRVRGPCRQADRT 178
Query: 175 VDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEELKGKPGEVLALRDEAVC 234
+DW+ D T TVLRK+ ++D PG + +EV LF+A+ ++ G PG V+A + A+
Sbjct: 179 IDWQHDSTATVLRKINSADGMPGLVDSLFFQEVRLFDAHEAHDISGVPGTVIAQCEGALA 238
Query: 235 IGTRDGAVWITHMRERKKESIKLPSARVLGEFLKGVKEDPIKPWEKVDFKTYREILYEEE 294
T DGAVWI H+R +S+KLP+A+V F P +P Y I Y E
Sbjct: 239 RATVDGAVWIGHVRRLAPKSLKLPAAKV---FAAEAAYLPHRPG-----CGYAPIRYREH 290
Query: 295 DGIGFIHFNFYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMNLNTIENAE 354
+G + F+FYNGAM+T C LL + A +RP + ++L G D++SNG++L IE AE
Sbjct: 291 GEVGELAFSFYNGAMATGDCEALLGAYRAALERPTRVLLLTGGPDYWSNGIHLAGIEAAE 350
Query: 355 SPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNP 414
S ADESWRNINAIDD+ I++T D+L V+ ++GNAGAGGVFL+L D V+A + V+LNP
Sbjct: 351 SAADESWRNINAIDDLARAIIETTDRLVVSVIRGNAGAGGVFLSLAADEVWASDQVILNP 410
Query: 415 HYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFGKTPKEFR 474
HYK++GNLYGSE+WTY LP+R G + + R+P+ +A + ++D V
Sbjct: 411 HYKDMGNLYGSEYWTYLLPRRAGAANATRITQCRLPMGVAEARRLAIVDRVLSGEALADA 470
Query: 475 QRLKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHELEKMKLNFYGFDTSYHI 534
++ + F + K++ R + E + +Q R+ EL +MKLNFYGFD SYH+
Sbjct: 471 SLVRSGAA-MASDAGFAARLAAKQQRRAADEAEKPLQSYRDEELRRMKLNFYGFDPSYHV 529
Query: 535 ARYYFVRRKPHFRTPPYLAIHR 556
ARY F+ + P RTP +A HR
Sbjct: 530 ARYNFIHKVPKSRTPLTIAGHR 551
emb|CAA85446| (Z36982) HOXX [Rhizobium leguminosarum] >gi|1167856|emb|CAA37165|
(X52974) hypX [Rhizobium leguminosarum]
Length = 561
Score = 503 bits (1282), Expect = e-141
Identities = 266/560 (47%), Positives = 352/560 (62%), Gaps = 16/560 (2%)
Query: 1 MRILFLSYRFNSLSQRLYCELTEREHEVSVELDVHPDLTVEAAELYKPDLIIAPFLKRKI 60
MRIL L + FNSLSQRL+ +L HEVSVELD+H DLT EA L+ P LIIAPFLKR I
Sbjct: 1 MRILLLCHSFNSLSQRLHVDLRRAGHEVSVELDIHDDLTREAVALFSPHLIIAPFLKRPI 60
Query: 61 PQEVWKKYKTLIIHPGPPGDRGPNALDWAIMKGERIWGVTLLEASEEYDAGDVWAYRTFP 120
P +VW++ LI+HPG GD+GP+ALDWAI++ E WGVTL+EA EE DAG VWA+R FP
Sbjct: 61 PADVWRRTLCLIVHPGIRGDKGPSALDWAILESEARWGVTLIEAREEMDAGPVWAWREFP 120
Query: 121 MRFARKASIYRNEVTEGVVECVLEALENFERGDFKPTPQKEHWWNPKMEQELRRVDWEQD 180
MR ARK+S+YR EVTE CV EAL ERG+ P +W + R+ D D
Sbjct: 121 MRPARKSSLYRREVTEAATACVFEALGRIERGEGPVMP--ANWGRGRERSACRKSDRMLD 178
Query: 181 ----DTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEELKGKPGEVLALRDEAVCIG 236
+ LR + ASD PGA ++G+ L+F+A P E L G PG ++ +AV +
Sbjct: 179 PALHSAEEALRIIRASDGDPGALLTIVGQTFLVFDAEPAEGLAGPPGTLVGRSRQAVAMA 238
Query: 237 TRDGAVWITHMRERKKESIKLPSARVLGEFLKGVKEDPIKPWEKVDFKTYREILYEEEDG 296
R+GA+W+ H+R + S+KLP+ R+L GV D + + + Y EE+G
Sbjct: 239 FREGALWVAHLRRPEARSLKLPALRLL-----GVDADVLPIVARP-----QPCRYREENG 288
Query: 297 IGFIHFNFYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMNLNTIENAESP 356
+G + F F+NGAMS+E C L E I AK R + +VL G D +SNG++L IE+A+S
Sbjct: 289 VGVLEFRFHNGAMSSEDCDILREAIVTAKARALPVLVLQGDADCWSNGIHLGIIESADSA 348
Query: 357 ADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHY 416
ADESWRNINA++++ EI+ T D+L +A + GNAGAGGVFL+L D V+ REGV+LNPHY
Sbjct: 349 ADESWRNINAMNELVREIIVTDDRLVIAAVLGNAGAGGVFLSLAADEVWMREGVILNPHY 408
Query: 417 KNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFGKTPKEFRQR 476
K++GNLYGSE+WTY LP RVG ++ + VM+ R+P+ +A E GL Q
Sbjct: 409 KDMGNLYGSEYWTYLLPARVGEDRARRVMQARLPMGIDEALEFGLATRRLPGNIDAAEQV 468
Query: 477 LKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHELEKMKLNFYGFDTSYHIAR 536
L + S + I K+ R E + + RE EL +M+ NFYGFD SYH+AR
Sbjct: 469 LHRAVAELAASPELAGRIAAKQARRGRDEAEKPLAAYREEELRRMRRNFYGFDPSYHVAR 528
Query: 537 YYFVRRKPHFRTPPYLAIHR 556
Y F+R+ P RTP LAIHR
Sbjct: 529 YNFIRKTPKSRTPLTLAIHR 548
gi|3372358 (AF042490) 4-chlorobenzoyl CoA dehalogenase [Arthrobacter sp. TM1]
Length = 276
Score = 70.6 bits (170), Expect = 3e-11
Identities = 62/239 (25%), Positives = 108/239 (44%), Gaps = 14/239 (5%)
Query: 289 ILYEEEDGIGFIHFN--FYNGAMSTEQCYRLLETI-KYAKKRPVKAIVLLGSEDFFSNGM 345
I E DG+ I F + A S + LE + + V AIVL G FS G
Sbjct: 9 ISVEHTDGVATIRFTRPSKHNAASAQLLLETLEALYRLESDDSVGAIVLTGEGAVFSAGF 68
Query: 346 NLNTIENAESPADESWRNINAID-DVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLV 404
+L + + +S + A+ +L +K T+A + G A GG+ ++L CDL
Sbjct: 69 DLEEVPMGPASEIQSHFRLKALYYHAVIHMLARIEKPTLAAINGPAVGGGLGMSLACDLA 128
Query: 405 FAREGVVLNPHYKNIG--NLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLI 462
+ P + +IG N S F+ LP+ VG+ + E + + + +A+E G++
Sbjct: 129 VCTDRATFLPAWMSIGIANDASSSFY---LPRIVGYRRAMEWLLTNRTLGADEAYEWGVV 185
Query: 463 DGVFGKTPKEFRQRLKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHELEKM 521
+ VF + +F+ R+ E + + + + K + + S E LE C EHE++ +
Sbjct: 186 NRVFSEA--DFQSRVGEIARQLAAAPTHLQGLVKNRIQEGSSETLE---SCTEHEVQNV 239
pir||A48956 4-chlorobenzoate-CoA dehalogenase - Arthrobacter sp >gi|142207
(M93187) 4-chlorobenzoyl CoA dehalogenase [Arthrobacter
sp. SU] >gi|4584855|gb|AAD25164.1|AF030397_2 (AF030397)
4-chlorobenzoyl CoA dehalogenase [Arthrobacter sp. SU]
Length = 276
Score = 69.9 bits (168), Expect = 5e-11
Identities = 62/239 (25%), Positives = 108/239 (44%), Gaps = 14/239 (5%)
Query: 289 ILYEEEDGIGFIHFN--FYNGAMSTEQCYRLLETI-KYAKKRPVKAIVLLGSEDFFSNGM 345
I E DG+ I F + A S + LE + + V AIVL G FS G
Sbjct: 9 ISVEHTDGVATIRFTRPSKHNAASGQLLLETLEALYRLESDDSVGAIVLTGEGAVFSAGF 68
Query: 346 NLNTIENAESPADESWRNINAID-DVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLV 404
+L + + +S + A+ +L +K T+A + G A GG+ ++L CDL
Sbjct: 69 DLEEVPMGPASEIQSHFRLKALYYHAVIHMLARIEKPTLAAINGPAVGGGLGMSLACDLA 128
Query: 405 FAREGVVLNPHYKNIG--NLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLI 462
+ P + +IG N S F+ LP+ VG+ + E + + + +A+E G++
Sbjct: 129 VCTDRATFLPAWMSIGIANDASSSFY---LPRIVGYRRAMEWLLTNRTLGADEAYEWGVV 185
Query: 463 DGVFGKTPKEFRQRLKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHELEKM 521
+ VF + +F+ R+ E + + + + K + + S E LE C EHE++ +
Sbjct: 186 NRVFSEA--DFQSRVGEIARQLAAAPTHLQGLVKNRIQEGSSETLE---SCTEHEVQNV 239
sp|O67890|FMT_AQUAE METHIONYL-TRNA FORMYLTRANSFERASE >gi|2984330 (AE000774)
methionyl-tRNA formyltransferase [Aquifex aeolicus]
Length = 303
Score = 66.0 bits (158), Expect = 8e-10
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 13/206 (6%)
Query: 40 VEAAELYKPDLIIAPFLKRKIPQEVWK--KYKTLIIHPGP-PGDRGPNALDWAIMKGERI 96
+ E KPD I+ + +P+EV YKT+ +H P RG + AIM GE+
Sbjct: 69 IPLVEELKPDCIVVVAYGKILPKEVLDLPPYKTINLHASLLPKYRGAAPIQRAIMAGEKE 128
Query: 97 WGVTLLEASEEYDAGDVWAYRTFPMRFARKASIYRNEVTEGVVECVLEALENFERGDFKP 156
G T++ +EE DAGD+ A P+ ++ + + ++ L + G KP
Sbjct: 129 TGNTVMLVNEEMDAGDILAQEKIPIEEEDNFLTLSEKLAKSGAKLLVNTLRLWFEGKVKP 188
Query: 157 TPQ--KEHWWNPKMEQELRRVDWE--QDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNA 212
PQ +E + P +++E R+ W+ + + +R +Y P A + G + + A
Sbjct: 189 VPQNHEEATYAPPVQKEEYRICWKASAESVRDRIRGLY-----PNAYTTFRGNRIKILKA 243
Query: 213 YPEEELKGKPGEVLALRDEAVCIGTR 238
+L+G PGE+ + V G +
Sbjct: 244 -RVVDLEGYPGEIQDTKRLIVACGEK 268
gi|2649635 (AE001038) enoyl-CoA hydratase (fad-3) [Archaeoglobus fulgidus]
Length = 259
Score = 65.6 bits (157), Expect = 1e-09
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 11/180 (6%)
Query: 291 YEEEDGIGFIHFNFYNG--AMSTEQCYRLLETIKYAKK-RPVKAIVLLGSEDFFSNGMNL 347
Y EEDG+ ++ FN A++ + L E + YA+ + V+ IVL G F G ++
Sbjct: 6 YREEDGVLWVKFNRPEALNAINKDFVKGLREVVDYARNNKTVRVIVLTGEGKAFCAGADI 65
Query: 348 NTIENAESPADESWRNINAIDDVCEEI--LKTPDKLTVAGMQGNAGAGGVFLALTCDLVF 405
+ES + I + V EE+ L+ P +A + G A GG +A+ CD++
Sbjct: 66 KMF--SESSHFVARSTIEELGKVLEEMEDLEVP---VIAAINGFALGGGCEIAMACDIII 120
Query: 406 AREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGV 465
A E N+G + G+ T L + VGW+K E+ IS+++A+ +GL++ V
Sbjct: 121 ASERASFGQPEINLGIIPGAG-GTQRLARIVGWKKAMELCLTGERISAEEAYRLGLVNKV 179
emb|CAB12828| (Z99109) similar to 3-hydroxbutyryl-CoA dehydratase [Bacillus
subtilis]
Length = 275
Score = 65.6 bits (157), Expect = 1e-09
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 11/218 (5%)
Query: 308 AMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINAI 367
A++ + L E ++ A ++L GS FS ++ + + P D+ R ++ I
Sbjct: 25 ALNEQMLSELKEAVEMAAASEALIVLLRGSGKGFSAAGDIRMMTSEHDP-DQFKRLMDTI 83
Query: 368 DDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEF 427
+ V + + K+T+A + G A G+ LAL D+V A + VL ++ IG L
Sbjct: 84 EAVTLNLYQMK-KVTIAAIHGAAAGLGLSLALCADIVLAEKNAVLAMNFIGIG-LVPDGG 141
Query: 428 WTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFGKTPKE-----FRQRLKERIK 482
Y L KR+G K K+++ + +S+ +A ++GL+DG F P E L +
Sbjct: 142 GHYLLKKRIGEAKAKKLIWSGKKLSASEAADMGLLDGTFAGDPAEGARPIIETLLASPLL 201
Query: 483 NFINSKDFYEFI---EKKKKERTSGEWLEEIQKCREHE 517
I +K ++ + E KK E +++ ++H+
Sbjct: 202 AMIETKGIFQSLQIEELKKVLSLERSAQERMRRTKDHQ 239
sp|P43523|FMT_THETH METHIONYL-TRNA FORMYLTRANSFERASE >gi|1072951|pir||B55228 fmt
protein homolog - Thermus aquaticus
>gi|602915|emb|CAA55696| (X79087) methionyl-tRNA
formyltransferase [Thermus thermophilus]
Length = 305
Score = 62.5 bits (149), Expect = 9e-09
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 8/220 (3%)
Query: 40 VEAAELYKPDLIIAPFLKRKIPQEVWK--KYKTLIIHPGP-PGDRGPNALDWAIMKGERI 96
+EA P++ + + IP+E + L +HP P RG + A++ GER
Sbjct: 70 LEALRQAAPEVAVVAAYGKLIPKEALDIPPHGFLNLHPSLLPKYRGAAPVQRALLAGERE 129
Query: 97 WGVTLLEASEEYDAGDVWAYRTFPMRFARKASIYRNEVTEGVVECVLEALENFERGDFKP 156
GV+++ E D G ++A P+ A N + + VE +LE LE + P
Sbjct: 130 TGVSIMRLDEGLDTGPLYAVWRTPILPDEDAVALGNRLRDKGVELLLEVLERLP--ELTP 187
Query: 157 TPQK-EHWWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPE 215
PQ+ E + P + +E R+D+ + + + R+ A PG+ G+ V PE
Sbjct: 188 RPQEGEVSYAPPLSKEEGRLDF-GESAEALYRRHRAVQPWPGSYFFHRGRRVKALRLRPE 246
Query: 216 EELKGKPGEVLALRDEAVCIGTRDGAVWITHMRERKKESI 255
+G+PG V + E V +GT G + + ++ + ++
Sbjct: 247 PG-EGEPGVVARVGPEGVAVGTASGLLLLLEVQPEGRRAM 285
sp|Q9WYZ8|FMT_THEMA METHIONYL-TRNA FORMYLTRANSFERASE
>gi|4981041|gb|AAD35613.1|AE001728_14 (AE001728)
methionyl-tRNA formyltransferase [Thermotoga maritima]
Length = 313
Score = 60.5 bits (144), Expect = 4e-08
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 6/220 (2%)
Query: 47 KPDLIIAPFLKRKIPQEVWK--KYKTLIIHPGP-PGDRGPNALDWAIMKGERIWGVTLLE 103
+PD+II + + ++V + IHP P RG + + + GE GVT+ +
Sbjct: 78 RPDVIIVASYGKILGEKVLSLPRLGCYNIHPSLLPKYRGASPIQRVLENGEERTGVTIYK 137
Query: 104 ASEEYDAGDVWAYRTFPMRFARKASIYRNEVTEGVVECVLEALENFERG--DFKPTPQKE 161
+E DAG + + + + E E ++E LE + G + K
Sbjct: 138 MVKELDAGPIALQKEISVDPFETFDQLEKRLIELSKEMLIEFLEKLKTGNIELKEQDHSR 197
Query: 162 HWWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEELKGK 221
+ P +++E VD+ +D ++V K+ A DS+PGA + + EV LF + +
Sbjct: 198 ATYAPMIKKEDLIVDFSKD-AESVKNKIRAYDSRPGARAFLGNVEVKLFGVTAIDSSGDE 256
Query: 222 PGEVLALRDEAVCIGTRDGAVWITHMRERKKESIKLPSAR 261
PG + + E IGT DG V + +++ K+ + A+
Sbjct: 257 PGLINYIDREGAWIGTGDGKVKVRYIQFPGKKKMTFWEAK 296
gb|AAD18041| (AF123253) AIM1 protein [Arabidopsis thaliana]
>gi|4972047|emb|CAB43915.1| (AL078470) AIM1 protein
[Arabidopsis thaliana]
Length = 721
Score = 58.6 bits (139), Expect = 1e-07
Identities = 42/141 (29%), Positives = 70/141 (48%), Gaps = 2/141 (1%)
Query: 325 KKRPVKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVA 384
++ VKAIVL+G+ FS G ++N + D S +++ VC +++ K VA
Sbjct: 46 QRNDVKAIVLIGNNGRFSGGFDINVFQQVHKTGDLSLMPEVSVELVC-NLMEDSRKPVVA 104
Query: 385 GMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEV 444
++G A GG+ LA+ C A L +G + G T LP+ VG K ++
Sbjct: 105 AVEGLALGGGLELAMACHARVAAPKAQLGLPELTLGVIPGFG-GTQRLPRLVGLAKATDM 163
Query: 445 MENRMPISSKKAFEIGLIDGV 465
+ ISS++ ++GLID +
Sbjct: 164 ILLSKSISSEEGHKLGLIDAL 184
emb|CAA74425| (Y14078) Hypothetical protein [Bacillus subtilis]
Length = 216
Score = 57.4 bits (136), Expect = 3e-07
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 353 AESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVL 412
+E D+ R ++ I+ V + + K+T+A + G A G+ LAL D+V A + VL
Sbjct: 10 SEHDPDQFKRLMDTIEAVTLNLYQMK-KVTIAAIHGAAAGLGLSLALCADIVLAEKNAVL 68
Query: 413 NPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFGKTPKE 472
++ IG L Y L KR+G K K+++ + +S+ +A ++GL+DG F P E
Sbjct: 69 AMNFIGIG-LVPDGGGHYLLKKRIGEAKAKKLIWSGKKLSASEAADMGLLDGTFAGDPAE 127
Query: 473 -----FRQRLKERIKNFINSKDFYEFI---EKKKKERTSGEWLEEIQKCREHE 517
L + I +K ++ + E KK E +++ ++H+
Sbjct: 128 GARPIIETLLASPLLAMIETKGIFQSLQIEELKKVLSLERSAQERMRRTKDHQ 180
sp|P28037|FTDH_RAT 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE (10-FTHFDH) (FBP-CI)
>gi|908915 (M59861) 10-formyltetrahydrofolate
dehydrogenase [Rattus norvegicus]
Length = 902
Score = 57.0 bits (135), Expect = 4e-07
Identities = 41/186 (22%), Positives = 88/186 (47%), Gaps = 7/186 (3%)
Query: 49 DLIIAPFLKRKIPQEVWK--KYKTLIIHPGP-PGDRGPNALDWAIMKGERIWGVTLLEAS 105
+L + PF + IP EV ++ ++I HP P RG +A++W ++ G++ G T+ A
Sbjct: 79 ELNVLPFCSQFIPMEVINAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFTIFWAD 138
Query: 106 EEYDAGDVWAYRTFP-MRFARKASIYRNEVTEGVVECVLEALENFERGDFKPTPQKEH-- 162
+ D GD+ + + +++Y + ++ +++A+ G PQ E
Sbjct: 139 DGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGTAPRCPQSEEGA 198
Query: 163 WWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEELKGKP 222
+ ++E +++W+Q + + + +D PGA ++ G+++ FN+
Sbjct: 199 TYEGIQKKETAKINWDQ-PAEAIHNWIRGNDKVPGAWTEACGQKLTFFNSTLNTSGLSTQ 257
Query: 223 GEVLAL 228
GE L +
Sbjct: 258 GEALPI 263
pir||A60560 formyltetrahydrofolate dehydrogenase (EC 1.5.1.6) / aldehyde
dehydrogenase (NADP+) (EC 1.2.1.4) - rat
Length = 902
Score = 57.0 bits (135), Expect = 4e-07
Identities = 41/186 (22%), Positives = 88/186 (47%), Gaps = 7/186 (3%)
Query: 49 DLIIAPFLKRKIPQEVWK--KYKTLIIHPGP-PGDRGPNALDWAIMKGERIWGVTLLEAS 105
+L + PF + IP EV ++ ++I HP P RG +A++W ++ G++ G T+ A
Sbjct: 79 ELNVLPFCSQFIPMEVINAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFTIFWAD 138
Query: 106 EEYDAGDVWAYRTFP-MRFARKASIYRNEVTEGVVECVLEALENFERGDFKPTPQKEH-- 162
+ D GD+ + + +++Y + ++ +++A+ G PQ E
Sbjct: 139 DGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGTAPRCPQSEEGA 198
Query: 163 WWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEELKGKP 222
+ ++E +++W+Q + + + +D PGA ++ G+++ FN+
Sbjct: 199 TYEGIQKKETAKINWDQ-PAEAIHNWIRGNDKVPGAWTEACGQKLTFFNSTLNTSGLSTQ 257
Query: 223 GEVLAL 228
GE L +
Sbjct: 258 GEALPI 263
sp|P94463|FMT_BACSU METHIONYL-TRNA FORMYLTRANSFERASE >gi|2337802|emb|CAA74263| (Y13937)
putative Fmt protein [Bacillus subtilis]
>gi|2633945|emb|CAB13446| (Z99112) methionyl-tRNA
formyltransferase [Bacillus subtilis]
Length = 317
Score = 56.6 bits (134), Expect = 5e-07
Identities = 46/224 (20%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 40 VEAAELYKPDLIIAPFLKRKIPQEVWK--KYKTLIIHPGP-PGDRGPNALDWAIMKGERI 96
+E KPDLI+ + +P+E+ KY + +H P RG + ++I++G++
Sbjct: 72 IEKVLALKPDLIVTAAFGQILPKELLDSPKYGCINVHASLLPELRGGAPIHYSILQGKKK 131
Query: 97 WGVTLLEASEEYDAGDVWAYRTFPMRFARKASIYRNEVTEGVVECVLEALENFERGDFKP 156
G+T++ E+ DAGD+ + + ++++ + + E + N G P
Sbjct: 132 TGITIMYMVEKLDAGDMISKVEVDIEETDNVGTLHDKLSVAGAKLLSETVPNVIAGSISP 191
Query: 157 TPQKEH--WWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYP 214
Q E + P +++E +DW + + + ++ + P A + + G+ + ++ +
Sbjct: 192 EKQDEEKATYAPNIKREQELLDWSRTG-EELYNQIRGLNPWPVAYTTLNGQNLKIWASKK 250
Query: 215 -EEELKGKPGEVLALRDEAVCIGT-RDGAVWITHMRERKKESIK 256
+PG V+A+ E + + T + A+ +T ++ K+ +K
Sbjct: 251 IAAPTTAEPGTVVAVEKEGIIVATGNETALLLTELQPAGKKRMK 294
gi|2226378 (AF006493) ACBP/ECHM [Cyprinus carpio]
Length = 356
Score = 56.6 bits (134), Expect = 5e-07
Identities = 58/243 (23%), Positives = 101/243 (40%), Gaps = 19/243 (7%)
Query: 284 KTYREILYEEEDGIGFIHFNF--YNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFF 341
K ++ +L ED I I N A++ E L+E + A K V+ GS D++
Sbjct: 100 KGFQTLLVSTEDNITTIRLNRPEKKNAITVEMYNELIEALDLAGKDSSVITVITGSGDYY 159
Query: 342 SNGMNLNTIENAESPADESW-RNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALT 400
+G +LN W + + + ++ + + P L + + G A V L
Sbjct: 160 CSGNDLNNFTKIPEVEYRRWLKMLGSAEEYVKVYIDFPKPL-IGVINGPAVGVSVTLLGL 218
Query: 401 CDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIG 460
D+V+A E + + +G +Y PK +G K E++ +++ +A E+G
Sbjct: 219 FDVVYATEKATFHTPFSQLGQS-PEGCSSYLFPKIMGAAKASEMLLFNKKLTAAQACEVG 277
Query: 461 LIDGVFGKT--PKEFRQRLKERIK----NFINSKDFYEFIEKKK--------KERTSGEW 506
L+ VF ++ E RLK K + + SK +EK+K ER W
Sbjct: 278 LVTEVFPESSFQSEVWTRLKAYAKLPKNSLVLSKQLIRAVEKEKLHAVNDAEVERLVERW 337
Query: 507 LEE 509
L +
Sbjct: 338 LSD 340
emb|CAA55630| (X78996) tetrafunctional protein [Cucumis sativus]
Length = 725
Score = 56.6 bits (134), Expect = 5e-07
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 8/208 (3%)
Query: 287 REILYEEEDGIGFIHF-NFYNGAMSTEQCYRLLETIKYAKKRP-VKAIVLLGSEDFFSNG 344
R ++ DG+ I N ++S + + L ++ + A +R VKAIV+ G++ FS G
Sbjct: 8 RTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKFSGG 67
Query: 345 MNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLV 404
++ + E N ++ +I + K VA + G A GG+ +A+ C
Sbjct: 68 FDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMACHAR 127
Query: 405 FAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDG 464
+ L +G + G T LP+ VG K E+M PI ++A +GL+D
Sbjct: 128 ISTPTAQLGLPELQLGIIPGFG-GTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLVDA 186
Query: 465 VFG-----KTPKEFRQRLKERIKNFINS 487
+ T + + + ER + +++S
Sbjct: 187 IVPPEELINTARRWALEILERRRPWVHS 214
emb|CAA71350| (Y10304) Met-tRNAi formyl transferase [Bacillus subtilis]
Length = 317
Score = 55.4 bits (131), Expect = 1e-06
Identities = 49/226 (21%), Positives = 106/226 (46%), Gaps = 12/226 (5%)
Query: 40 VEAAELYKPDLIIAPFLKRKIPQEVWK--KYKTLIIHPGP-PGDRGPNALDWAIMKGERI 96
+E KPDLI+ + +P+E+ KY + +H P RG + ++I++G++
Sbjct: 72 IEKVLALKPDLIVTAAFGQILPKELLDSPKYGCINVHASLLPELRGGAPIHYSILQGKKK 131
Query: 97 WGVTLLEASEEYDAGDVWAYRTFPMRFARKASIYRNEVTEGVVECVLEALENFERGDFKP 156
G+T++ E+ DAGD+ + + ++++ + + E + N G P
Sbjct: 132 TGITIMYMVEKLDAGDMISKVEVDIEETDNVGTLHDKLSVAGAKLLSETVPNVIAGSISP 191
Query: 157 TPQKEH--WWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYP 214
Q E + P +++E +DW + + + ++ + P A + + G++ L N
Sbjct: 192 EKQDEEKATYAPNIKREQELLDWSRTG-EELYNQIRGLNPWPVAYTTLNGQK--LENMGV 248
Query: 215 EEEL---KGKPGEVLALRDEAVCIGT-RDGAVWITHMRERKKESIK 256
E+ +PG V+A+ E + + T + A+ +T ++ K+ +K
Sbjct: 249 EKNSGTNNSEPGTVVAVEKEGIIVATGNETALLLTELQPGGKKRMK 294
gi|2293148 (AF008220) dihydroxynaphthoate synthase [Bacillus subtilis]
>gi|2635564|emb|CAB15058| (Z99119) dihydroxynapthoic
acid synthetase [Bacillus subtilis]
Length = 271
Score = 55.0 bits (130), Expect = 2e-06
Identities = 49/189 (25%), Positives = 89/189 (46%), Gaps = 13/189 (6%)
Query: 284 KTYREILYEEEDGIGFIHFNF--YNGAMSTEQCYRLLETIKYAKK-RPVKAIVLLGSED- 339
+TY EILYE +GI I N + A + + +++ A+ + V IVL G+ D
Sbjct: 8 RTYDEILYETYNGIAKITINRPEVHNAFTPKTVAEMIDAFADARDDQNVGVIVLAGAGDK 67
Query: 340 FFSNGMNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLAL 399
F +G + + D+ +N +D + +++ K VA + G A GG L +
Sbjct: 68 AFCSGGDQKVRGHGGYVGDDQIPRLNVLD--LQRLIRVIPKPVVAMVSGYAIGGGHVLHI 125
Query: 400 TCDLVFAREGVVLNPHYKNIGNL---YGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKA 456
CDL A + + +G+ YGS + L + VG +K +E+ ++++A
Sbjct: 126 VCDLTIAADNAIFGQTGPKVGSFDAGYGSGY----LARIVGHKKAREIWYLCRQYNAQEA 181
Query: 457 FEIGLIDGV 465
++GL++ V
Sbjct: 182 LDMGLVNTV 190
emb|CAA99573.1| (Z75208) hypothetical protein [Bacillus subtilis]
>gi|2635319|emb|CAB14814| (Z99118) similar to
3-hydroxbutyryl-CoA dehydratase [Bacillus subtilis]
Length = 258
Score = 55.0 bits (130), Expect = 2e-06
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 22/226 (9%)
Query: 329 VKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQG 388
V++I++ G FFS G ++ + + D S + E I P K +A + G
Sbjct: 46 VRSIIIHGEGRFFSAGADIKEFTSLKGNEDSSLLAERG-QQLMERIESFP-KPIIAAIHG 103
Query: 389 NAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENR 448
A GG+ LA+ C + A E L N+G + G T LP+ VG K E++ +
Sbjct: 104 AALGGGLELAMACHIRIAAEDAKLGLPELNLGIIPGFA-GTQRLPRYVGTAKALELIGSG 162
Query: 449 MPISSKKAFEIGLIDGVFGKTPKEFRQRLKERIKNFINSKDFYEFIEKKKKERTSGEWLE 508
PIS K+A ++GL+ + K E ++ K F +K +T LE
Sbjct: 163 EPISGKEALDLGLV-SIGAKDEAEVIEKAKALAAKF-----------AEKSPQTLASLLE 210
Query: 509 EIQKCREHELE-KMKLNFYGFDTSYHI------ARYYFVRRKPHFR 547
+ + + E +KL F ++ + + +RKP F+
Sbjct: 211 LLYSNKVYSYEGSLKLEAKRFGEAFESEDAKEGIQAFLEKRKPQFK 256
gb|AAD34174.1|AF153613_1 (AF153613) peroxisomal D3,D2-enoyl-CoA isomerase [Mus musculus]
Length = 358
Score = 54.7 bits (129), Expect = 2e-06
Identities = 65/266 (24%), Positives = 110/266 (40%), Gaps = 22/266 (8%)
Query: 287 REILYEEEDGIGFIHFN--FYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNG 344
++IL EDGI I FN A+S + ++ +K A V G+ D++ +G
Sbjct: 105 KDILVTSEDGITKITFNRPTKKNAISFQMYRDIILALKNASTDNTVMAVFTGTGDYYCSG 164
Query: 345 MNLNTIENAESPADESWRN-INAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDL 403
+L +A +E+ N + D + P L VA + G A V L D
Sbjct: 165 NDLTNFTSATGGIEEAASNGAVLLRDFVNSFIDFPKPL-VAVVNGPAVGISVTLLGLFDA 223
Query: 404 VFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLID 463
VFA + + + +G +YT PK +G K E++ +++++A+ GL+
Sbjct: 224 VFASDRATFHTPFSQLGQS-PEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVT 282
Query: 464 GVFGKTPKEFRQRLKERIKNFIN-----SKDFYEFIEKKKKERTSGEWLEEIQKCREHEL 518
VF ++ F + R+K + N + E I + +KE+ EE + L
Sbjct: 283 EVFPES--TFETEVWTRLKTYANVPPNAMRISKELIRQNEKEKLYAVNAEECTTLQARWL 340
Query: 519 EKMKLNFYGFDTSYHIARYYFVRRKP 544
+ +N A FV RKP
Sbjct: 341 SEECMN----------AIMSFVSRKP 356
emb|CAA04386| (AJ000886) Tetrafunctional protein of glyoxysomal fatty acid
beta-oxidation [Brassica napus]
Length = 725
Score = 54.7 bits (129), Expect = 2e-06
Identities = 42/159 (26%), Positives = 75/159 (46%), Gaps = 2/159 (1%)
Query: 308 AMSTEQCYRLLETIKYAKKR-PVKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINA 366
++S + Y L + A R VKAIV+ G++ FS G +++ + + +
Sbjct: 30 SLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGFDISGFGEIQKGTMKEPKVGYI 89
Query: 367 IDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSE 426
D+ ++L+ K +VA + G A GG+ L++ C + G L +G + G
Sbjct: 90 SIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARISAPGAQLGLPELQLGVIPGFG 149
Query: 427 FWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGV 465
T LP+ VG K E++ P+ +++ +GLID V
Sbjct: 150 -GTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAV 187
gb|AAF11976.1|AE002073_6 (AE002073) methionyl-tRNA formyltransferase [Deinococcus
radiodurans]
Length = 318
Score = 53.9 bits (127), Expect = 3e-06
Identities = 42/177 (23%), Positives = 78/177 (43%), Gaps = 2/177 (1%)
Query: 78 PGDRGPNALDWAIMKGERIWGVTLLEASEEYDAGDVWAYRTFPMRFARKASIYRNEVTEG 137
P RG + WA+++GE + G T+++ E D G V P+R + ++E
Sbjct: 118 PRYRGAAPIQWALIRGETVTGTTIMQTDEGMDTGPVLLQEELPIRPEWTSVELSAALSEQ 177
Query: 138 VVECVLEALENFERGDFKPTPQKEHWWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPG 197
++ AL E +P + + P + +E V W D + VL + + P
Sbjct: 178 AAALIVRALRTLETLTPQPQDEAQATHAPLLVKEDGFVRW-ADPAQAVLDRFRGVAAWPQ 236
Query: 198 ASSKVLGKEVLLFNAYPEEELKGKPGEVLALRDEAVCIGTRDGAVWITHMRERKKES 254
++ GK + L + KG+PG+VL + + + +GAV I ++ K++
Sbjct: 237 TTAFFGGKRLKLAGLTLGQG-KGQPGKVLQVGAGGLTVACGEGAVCIATVQPEAKKA 292
emb|CAA92957.1| (Z68748) Similarity to Rat Formyltetrahydrofolate dehydrogenase
(SW:FTDH_RAT); cDNA EST EMBL:D37050 comes from this
gene; cDNA EST EMBL:D32423 comes from this gene; cDNA
EST EMBL:D34164 comes from this gene; cDNA EST
EMBL:D37... >gi|3876765|emb|CAA92998.1| (Z68760)
Similarity to Rat Formyltetrahydrofolate dehydrogenase
(SW:FTDH_RAT); cDNA EST EMBL:D37050 comes from this
gene; cDNA EST EMBL:D32423 comes from this gene; cDNA
EST EMBL:D34164 comes from this gene; cDNA EST
EMBL:D37...
Length = 887
Score = 53.9 bits (127), Expect = 3e-06
Identities = 68/305 (22%), Positives = 131/305 (42%), Gaps = 26/305 (8%)
Query: 41 EAAELYKP---DLIIAPFLKRKIPQEVWKK--YKTLIIHPGP-PGDRGPNALDWAIMKGE 94
E ELYK +L + PF + IP E+ + K++I HP P RG +A++W +++G+
Sbjct: 74 EMLELYKSFGAELNVLPFCTQFIPLEITEAPAKKSIIYHPSILPKHRGASAINWTLIEGD 133
Query: 95 RIWGVTLLEASEEYDAGDVWAYRTFPMRFARKA-SIYRNEVTEGVVECVLEALENFERGD 153
G+++ A + D G + + + ++Y+ + V V E++E G
Sbjct: 134 EEAGLSIFWADDGLDTGPILLQKKCKVEENDTLNTLYKRFLYPAGVAAVAESVELIATGK 193
Query: 154 FKPTPQKEHW--WNPKM--EQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLL 209
Q E + P + + EL ++DW + + + + +D PGA + + G++V
Sbjct: 194 APRIVQPEEGASYEPYITTKPELAQIDWSKTQ-RQLHNFIRGNDKVPGAWAVLNGEKVSF 252
Query: 210 FNA-------YPEEELK----GKPGEVLALRDEAVCIGTRDGAVWITHMRERKKESIKLP 258
F + P++ ++ PG + + D + + DG W+ + + K K
Sbjct: 253 FGSKLWKPKKLPDDAVEVFVSEVPGGKVLVEDRGLLLPGSDGR-WV--IVDTVKIGTKTV 309
Query: 259 SARVLGEFLKGVKEDPIKPWEKVDFKTYREILYEEEDGIGFIHFNFYNGAMSTEQCYRLL 318
A G+ V+E + EK ++I +F+ S+ RL+
Sbjct: 310 PASKYGQGADQVQELVLTDEEKSTVAKLKKIWTGILKTQVSSDTDFFESGASSADVTRLV 369
Query: 319 ETIKY 323
E IK+
Sbjct: 370 EEIKF 374
dbj|BAA75329.1| (AB011837) enoyl CoA hydratase [Bacillus halodurans]
Length = 260
Score = 53.5 bits (126), Expect = 5e-06
Identities = 44/184 (23%), Positives = 81/184 (43%), Gaps = 8/184 (4%)
Query: 286 YREILYEEEDGIGFIHFN---FYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFS 342
+++I+YEE+ + ++ N YN + K + ++AIVL G+ F
Sbjct: 5 FKDIIYEEKGQVAWVTLNRPATYNAFTPVMNREVTVALKKANQSDAIRAIVLTGTGRAFC 64
Query: 343 NGMNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCD 402
+G +L+ + + + + A + +K +K +A + G A G+ LAL D
Sbjct: 65 SGEDLDGV----TVDTDHGAILRARYHPMMQGMKQVEKPIIAAVNGTAAGAGMSLALAAD 120
Query: 403 LVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLI 462
E + +G + S F Y LP+ +G+ K E+ P+S++ A GL+
Sbjct: 121 FRLVHENAKFVSAFLGVGLIPDSGF-LYQLPRMIGYAKALELAVLGKPLSAEDAQRCGLV 179
Query: 463 DGVF 466
VF
Sbjct: 180 TEVF 183
gb|AAD18042| (AF123254) MFP2 [Arabidopsis thaliana]
Length = 725
Score = 53.5 bits (126), Expect = 5e-06
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 308 AMSTEQCYRLLETIKYAKKR-PVKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINA 366
++S + Y L + A R VKAIV+ G++ FS G +++ + + +
Sbjct: 30 SLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYI 89
Query: 367 IDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSE 426
D+ ++L+ K +VA + G A GG+ LA+ C + L +G + G
Sbjct: 90 SIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFG 149
Query: 427 FWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGV 465
T LP+ VG K E++ P+ +++ +GLID V
Sbjct: 150 -GTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAV 187
pir||A42560 4-chlorobenzoate dehalogenase (EC 3.8.1.6), 30K chain - Pseudomonas
sp. (strain CBS-3)
Length = 269
Score = 53.5 bits (126), Expect = 5e-06
Identities = 55/244 (22%), Positives = 109/244 (44%), Gaps = 17/244 (6%)
Query: 286 YREILYEEEDGIGFIHFNF--YNGAMSTEQCYRLLETIKYAKKRP-VKAIVLLGSEDFFS 342
Y I + EDG+ I + A+S + + + + A++ V A+++ G+ED F
Sbjct: 2 YEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFC 61
Query: 343 NGMNLNTIENAESPAD-ESWRNINAI--DDVCEEILKTPDKLTVAGMQGNAGAGGVFLAL 399
G L I + A I A+ + +I++ + +A + G A GG+ ++L
Sbjct: 62 AGFYLREIPLDKGVAGVRDHFRIGALWWHQMIHKIIRVK-RPVLAAINGVAAGGGLGISL 120
Query: 400 TCDLVFAREGV--VLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAF 457
D+ + V H IGN + +Y+L + VG + E+M + ++A
Sbjct: 121 ASDMAICADSAKFVCAWHTIGIGNDTAT---SYSLARIVGMRRAMELMLTNRTLYPEEAK 177
Query: 458 EIGLIDGVFGKTPKEFRQRLKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHE 517
+ GL+ V+ K EFR+ + + + + + K ER W++ +++C E E
Sbjct: 178 DWGLVSRVYPKD--EFREVAWKVARELAAAPTHLQVMAK---ERFHAGWMQPVEECTEFE 232
Query: 518 LEKM 521
++ +
Sbjct: 233 IQNV 236
pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas
Sp. Strain Cbs-3 >gi|2392484|pdb|1NZY|C Chain C,
4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas
Sp. Strain Cbs-3
Length = 269
Score = 52.7 bits (124), Expect = 8e-06
Identities = 55/244 (22%), Positives = 109/244 (44%), Gaps = 17/244 (6%)
Query: 286 YREILYEEEDGIGFIHFNF--YNGAMSTEQCYRLLETIKYAKKRP-VKAIVLLGSEDFFS 342
Y I + EDG+ I + A+S + + + + A++ V A+++ G+ED F
Sbjct: 2 YEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFC 61
Query: 343 NGMNLNTIENAESPAD-ESWRNINAI--DDVCEEILKTPDKLTVAGMQGNAGAGGVFLAL 399
G L I + A I A+ + +I++ + +A + G A GG+ ++L
Sbjct: 62 AGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVK-RPVLAAINGVAAGGGLGISL 120
Query: 400 TCDLVFAREGV--VLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAF 457
D+ + V H IGN + +Y+L + VG + E+M + ++A
Sbjct: 121 ASDMAICADSAKFVCAWHTIGIGNDTAT---SYSLARIVGMRRAMELMLTNRTLYPEEAK 177
Query: 458 EIGLIDGVFGKTPKEFRQRLKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHE 517
+ GL+ V+ K EFR+ + + + + + K ER W++ +++C E E
Sbjct: 178 DWGLVSRVYPKD--EFREVAWKVARELAAAPTHLQVMAK---ERFHAGWMQPVEECTEFE 232
Query: 518 LEKM 521
++ +
Sbjct: 233 IQNV 236
sp|Q9ZK72|FMT_HELPJ METHIONYL-TRNA FORMYLTRANSFERASE >gi|4155662 (AE001534)
METHIONYL-TRNA FORMYLTRANSFERASE [Helicobacter pylori
J99]
Length = 305
Score = 51.9 bits (122), Expect = 1e-05
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 13/215 (6%)
Query: 47 KPDLIIAPFLKRKIPQEVWKKYKTLIIHPGP-PGDRGPNALDWAIMKGERIWGVTLLEAS 105
KPD I+ + +P+EV + +H P RG + + I+ +RI+G++ +
Sbjct: 82 KPDFIVVVAYGKILPKEVLTIAPCINLHASLLPKYRGASPIHEMILNDDRIYGISTMLMD 141
Query: 106 EEYDAGDVWAYRTFPMRFARKASIYRNEVTEGVVECVLEALENFERGDFKPTPQKEHWWN 165
E D+GD+ +F ++ +L L+NF KP + +
Sbjct: 142 LELDSGDILESASFLREDYLDLDALSLKLARMGATLLLSTLKNFHSITRKPQDHMQASFC 201
Query: 166 PKMEQELRRVDWEQDDTKTVLRKVYASDSQPGA----SSKVLGKEVLLFNAYPEEELKGK 221
K+ + V ++ D K + K A S P S K+L E++ E E K
Sbjct: 202 KKIAKADGLVGFK--DAKNLFLKSLAFKSWPEIFLENSLKLLEVELV------ENEKSHK 253
Query: 222 PGEVLALRDEAVCIGTRDGAVWITHMRERKKESIK 256
GE+LA+ + V +G G+V I ++ K+ +K
Sbjct: 254 EGEILAIDERGVLVGCLKGSVRIARLQAVGKKPLK 288
pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas
Sp. Strain Cbs-3
Length = 269
Score = 51.9 bits (122), Expect = 1e-05
Identities = 55/244 (22%), Positives = 109/244 (44%), Gaps = 17/244 (6%)
Query: 286 YREILYEEEDGIGFIHFNF--YNGAMSTEQCYRLLETIKYAKKRP-VKAIVLLGSEDFFS 342
Y I + EDG+ I + A+S + + + + A++ V A+++ G+ED F
Sbjct: 2 YEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFC 61
Query: 343 NGMNLNTIENAESPAD-ESWRNINAI--DDVCEEILKTPDKLTVAGMQGNAGAGGVFLAL 399
G L I + A I A+ + +I++ + +A + G A GG+ ++L
Sbjct: 62 AGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVK-RPVLAAINGVAAGGGLGISL 120
Query: 400 TCDLVFAREGV--VLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAF 457
D+ + V H IGN + +Y+L + VG + E+M + ++A
Sbjct: 121 ASDMAICADSAKFVCAWHTIGIGNDTAT---SYSLARIVGMRRAMELMLTDRTLYPEEAK 177
Query: 458 EIGLIDGVFGKTPKEFRQRLKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHE 517
+ GL+ V+ K EFR+ + + + + + K ER W++ +++C E E
Sbjct: 178 DWGLVSRVYPKD--EFREVAWKVARELAAAPTHLQVMAK---ERFHAGWMQPVEECTEFE 232
Query: 518 LEKM 521
++ +
Sbjct: 233 IQNV 236
gb|AAC05576.1| (AF051771) 4-chlorobenzoyl CoA dehalogenase [Pseudomonas sp. DJ-12]
Length = 269
Score = 51.2 bits (120), Expect = 2e-05
Identities = 50/244 (20%), Positives = 112/244 (45%), Gaps = 17/244 (6%)
Query: 286 YREILYEEEDGIGFIHFNF--YNGAMSTEQCYRLLETIKYAKKRP-VKAIVLLGSEDFFS 342
Y I + +DG+ I N + A+S + + + + A++ V A+++ G+ D F
Sbjct: 2 YEAIGHRVQDGVAEITINLPRHRNALSVKAMQEITDALNRAEEDDNVGAVMITGAADAFC 61
Query: 343 NGMNLNTI--ENAESPADESWRNINAI--DDVCEEILKTPDKLTVAGMQGNAGAGGVFLA 398
G L I +N + + +R + A+ + +I++ + +A + G A GG+ +
Sbjct: 62 AGFYLREIPLDNGVAGIRDHFR-VAALWWHQMIHKIIRVK-RPVLAAVNGVAAGGGLGVL 119
Query: 399 LTCDLVFAREGVVLNPHYKNIGNLYGSEFWT-YTLPKRVGWEKGKEVMENRMPISSKKAF 457
L D+ + + +IG G++ T Y+L + VG + E+M + +A
Sbjct: 120 LASDMAICSDNAKFVCAWHSIG--IGNDTATSYSLTRAVGMRRAMELMLTNRTLQPSEAC 177
Query: 458 EIGLIDGVFGKTPKEFRQRLKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHE 517
+ G+++ V+ + +FR + + + + + K ER W++ +++C E E
Sbjct: 178 DWGIVNRVYPQA--QFRDIAWKAARELASVPTHLQVMAK---ERFHAGWMQPVEECTEFE 232
Query: 518 LEKM 521
++ +
Sbjct: 233 IQNV 236
emb|CAB53329.1| (AL109974) putative formyltransferase [Streptomyces coelicolor
A3(2)]
Length = 315
Score = 50.4 bits (118), Expect = 4e-05
Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 16/223 (7%)
Query: 25 EHEVSVELDVHPDLTVEAAELYK---PDLIIAPFLKRKIPQEVW--KKYKTLIIHPGP-P 78
EH V V + PD E E K PD+I+A + IP ++ ++ TL +H P
Sbjct: 53 EHGVPVLIRNRPD-DDELFERLKDADPDIIVANNWRTWIPPRIFGLPRHGTLNVHDSLLP 111
Query: 79 GDRGPNALDWAIMKGERIWGVTLLEASEEYDAGDVWAYRTFPMRFARKASIYRNEVTEGV 138
G + L WA++ GE GVT ++E DAGD+ P+ A A+ ++ + +
Sbjct: 112 KYAGFSPLIWALINGETEVGVTAHMMNDELDAGDIVRQEAVPVGPADTATDLFHKTVDLI 171
Query: 139 VECVLEALENFERGDFKPTPQ---KEHWWNPKMEQELRRVDWE--QDDTKTVLRKVYASD 193
+ AL G + T Q + +++ + +++ R+DW +D + ++R S+
Sbjct: 172 APVTVGALGLIASGQTEFTKQDRSRASFFHKRSAEDI-RIDWNWPAEDLERLVRA--QSE 228
Query: 194 SQPGASSKVLGKEV-LLFNAYPEEELKGKPGEVLALRDEAVCI 235
P A + G+ + +L E G PG + E V I
Sbjct: 229 PYPSAFTFHRGRRLEILAAVVSEARYGGTPGRIFYREGEDVVI 271
emb|CAA74218| (Y13917) yngF [Bacillus subtilis] >gi|2634205|emb|CAB13705|
(Z99113) similar to 3-hydroxbutyryl-CoA dehydratase
[Bacillus subtilis]
Length = 260
Score = 50.0 bits (117), Expect = 5e-05
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 329 VKAIVLLGS-EDFFSNGMNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQ 387
++ ++L G+ E F G +L E + D+ +++ I + P + +A +
Sbjct: 49 IRCVILTGTGEKAFCAGADLK--ERIKLKEDQVLESVSLIQRTAALLDALPQPV-IAAIN 105
Query: 388 GNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMEN 447
G+A GG+ LAL CDL A E VL + + G+ T LP+ +G K KE +
Sbjct: 106 GSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAG-GTQRLPRLIGRGKAKEFIYT 164
Query: 448 RMPISSKKAFEIGLIDGV 465
+++ +A EIGL++ V
Sbjct: 165 GRRVTAHEAKEIGLVEHV 182
ref|NP_001957.1|| enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
>gi|585079|sp|Q08426|ECHP_HUMAN PEROXISOMAL BIFUNCTONAL
ENZYME (PBE) (PBFE) [INCLUDES: ENOYL-COA HYDRATASE ;
3,2-TRANS-ENOYL-COA ISOMERASE ; 3-HYDROXYACYL-COA
DEHYDROGENASE ] >gi|1071914|pir||A49613 enoyl-CoA
hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35), peroxisomal - human
>gi|452045 (L07077) enyol-CoA:
hydratase/3-hydroxyacyl-CoA dehydrogenase [Homo sapiens]
Length = 723
Score = 50.0 bits (117), Expect = 5e-05
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 9/162 (5%)
Query: 322 KYAKKRPVKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINAIDDVCEEILKTPDKL 381
K + +KAIV+ G+E FS G ++ A ++ I + V +EI + +K
Sbjct: 38 KAGRDHTIKAIVICGAEGKFSAGADIRGFS-----APRTFGLI--LGHVVDEIQRN-EKP 89
Query: 382 TVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKG 441
VA +QG A GG+ LAL C A + +G L G+ T LP+ G
Sbjct: 90 VVAAIQGMAFGGGLELALGCHYRIAHADAQVGLPEVTLGLLPGAR-GTQLLPRLTGVPAA 148
Query: 442 KEVMENRMPISSKKAFEIGLIDGVFGKTPKEFRQRLKERIKN 483
+++ + I + +A ++G++D V P E R +R+ +
Sbjct: 149 LDLITSGRRILADEALKLGILDKVVNSDPVEEAIRFAQRVSD 190
sp|O75891|FTDH_HUMAN 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE (10-FTHFDH) >gi|3560541
(AF052732) 10-formyltetrahydrofolate dehydrogenase [Homo
sapiens]
Length = 902
Score = 49.6 bits (116), Expect = 7e-05
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 11/172 (6%)
Query: 49 DLIIAPFLKRKIPQEVWK--KYKTLIIHPGP-PGDRGPNALDWAIMKGERIWGVTLLEAS 105
+L + P + IP E+ ++ ++I HP P RG +A++W ++ G++ G ++ A
Sbjct: 79 ELNVLPSCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWAD 138
Query: 106 EEYDAGDVWAYRTFPMRFARKASIYRN-----EVTEGVVECVLEALENFERGDFKPTPQK 160
+ D GD+ + + S N E +GVV+ V E + P P++
Sbjct: 139 DGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGVVQAVRLIAEG--KAPRLPQPKE 196
Query: 161 EHWWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNA 212
+ ++E +++W+Q + + + +D PGA ++ +++ FN+
Sbjct: 197 GATYEGIQKKETAKINWDQ-PAEAIHNWIRGNDKVPGAWTEACEQKLTFFNS 247
gb|AAF11052.1|AE001993_2 (AE001993) enoyl-CoA hydratase/3,2-trans-enoyl-CoA
isomerase/3-hydroxyacyl-CoA dehydrogenase [Deinococcus
radiodurans]
Length = 708
Score = 49.2 bits (115), Expect = 9e-05
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 329 VKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQG 388
VKA+V++G F G ++ A + + +D +K TVA + G
Sbjct: 62 VKAVVIIGGGRTFVAGADIKGFGLPREQAPDLRGTVAKLDAF--------EKPTVAAIHG 113
Query: 389 NAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENR 448
A GG+ LAL C A + L +G L G+ T LP+ VG +K E+M +
Sbjct: 114 TALGGGLELALGCTYRVAVKDAQLGLPEVKLGVLPGAG-GTQRLPRVVGAQKALEMMLSG 172
Query: 449 MPISSKKAFEIGLIDGV 465
PI + A E+GL+D +
Sbjct: 173 NPIKAPAAKELGLVDEI 189
pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
>gi|2392292|pdb|1DUB|B Chain B, 2-Enoyl-Coa Hydratase,
Data Collected At 100 K, Ph 6.5 >gi|2392293|pdb|1DUB|C
Chain C, 2-Enoyl-Coa Hydratase, Data Collected At 100 K,
Ph 6.5 >gi|2392294|pdb|1DUB|D Chain D, 2-Enoyl-Coa
Hydratase, Data Collected At 100 K, Ph 6.5
>gi|2392295|pdb|1DUB|E Chain E, 2-Enoyl-Coa Hydratase,
Data Collected At 100 K, Ph 6.5 >gi|2392296|pdb|1DUB|F
Chain F, 2-Enoyl-Coa Hydratase, Data Collected At 100 K,
Ph 6.5 >gi|3212678|pdb|2DUB|A Chain A, Enoyl-Coa
Hydratase Complexed With Octanoyl-Coa
>gi|3212679|pdb|2DUB|B Chain B, Enoyl-Coa Hydratase
Complexed With Octanoyl-Coa >gi|3212680|pdb|2DUB|C Chain
C, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
>gi|3212681|pdb|2DUB|D Chain D, Enoyl-Coa Hydratase
Complexed With Octanoyl-Coa >gi|3212682|pdb|2DUB|E Chain
E, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
>gi|3212683|pdb|2DUB|F Chain F, Enoyl-Coa Hydratase
Complexed With Octanoyl-Coa
Length = 261
Score = 48.4 bits (113), Expect = 2e-04
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 312 EQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINAIDDVC 371
E+ + LET + + V AIVL G E F+ G ++ ++N S + ++ D +
Sbjct: 38 EELNQALET--FEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHIT 95
Query: 372 EEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYT 431
+K P +A + G A GG LA+ CD+++A E +G + G+ T
Sbjct: 96 R--IKKP---VIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAG-GTQR 149
Query: 432 LPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFG-KTPKEFRQRLKERIKNFINSK 488
L + VG E++ IS++ A + GL+ +F +T E + E+I N NSK
Sbjct: 150 LTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIAN--NSK 205
sp|P14604|ECHM_RAT ENOYL-COA HYDRATASE, MITOCHONDRIAL PRECURSOR (SHORT CHAIN ENOYL-COA
HYDRATASE) (SCEH) (ENOYL-COA HYDRATASE 1)
>gi|92216|pir||S06477 enoyl-CoA hydratase (EC 4.2.1.17)
precursor, mitochondrial - rat >gi|56072|emb|CAA34080|
(X15958) precursor polypeptide (AA -29 to 261) [Rattus
norvegicus] >gi|227489|prf||1704377A enoyl-CoA hydratase
[Rattus norvegicus]
Length = 290
Score = 48.4 bits (113), Expect = 2e-04
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 312 EQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINAIDDVC 371
E+ + LET + + V AIVL G E F+ G ++ ++N S + ++ D +
Sbjct: 67 EELNQALET--FEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHIT 124
Query: 372 EEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYT 431
+K P +A + G A GG LA+ CD+++A E +G + G+ T
Sbjct: 125 R--IKKP---VIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAG-GTQR 178
Query: 432 LPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFG-KTPKEFRQRLKERIKNFINSK 488
L + VG E++ IS++ A + GL+ +F +T E + E+I N NSK
Sbjct: 179 LTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIAN--NSK 234
emb|CAB40698.1| (AL049587) putative enoyl coA hydratase [Streptomyces coelicolor]
Length = 257
Score = 48.0 bits (112), Expect = 2e-04
Identities = 52/201 (25%), Positives = 81/201 (39%), Gaps = 16/201 (7%)
Query: 288 EILYEEEDGIG--FIHFNFYNGAMSTEQCYRLLETIKYAKKRP-VKAIVLLGSEDFFSNG 344
++L+ D + +H AM+T L + P V+A+VL G F G
Sbjct: 10 QLLHRVADSVATVVVHHPAKRNAMTTAMWRALPGLLDGLAADPGVRALVLTGEGATFCAG 69
Query: 345 MNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLV 404
+++T+ ES + EE L + T+A ++G+ GG LA CDL
Sbjct: 70 ADISTLR-------ESAEEAQGLAVRAEEALAAFPRPTLAAIRGHCVGGGAQLAAACDLR 122
Query: 405 FAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLID- 463
FA E + +G +Y + T L G K ++ I + +A GL+D
Sbjct: 123 FAEETALFGVTPAKLGVVYPASA-TRRLVALTGPATAKYLLFGGELIDAARALRTGLVDE 181
Query: 464 ----GVFGKTPKEFRQRLKER 480
G GK EF + L R
Sbjct: 182 VLPEGGLGKRVAEFTRVLVSR 202
ref|NP_006108.1|| peroxisomal D3,D2-enoyl-CoA isomerase
>gi|4929831|gb|AAD34173.1|AF153612_1 (AF153612)
peroxisomal D3,D2-enoyl-CoA isomerase [Homo sapiens]
Length = 359
Score = 47.6 bits (111), Expect = 3e-04
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 9/231 (3%)
Query: 286 YREILYEEEDGIGFIHFNF--YNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSN 343
+ ++ EDGI I FN A++TE + ++ +K A K VL G+ D++S+
Sbjct: 104 FETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSS 163
Query: 344 GMNLNTIENAESPADESWRNINAI--DDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTC 401
G +L + E NA+ + + P L +A + G A V L
Sbjct: 164 GNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPL-IAVVNGPAVGISVTLLGLF 222
Query: 402 DLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGL 461
D V+A + + + ++G +YT PK + K E++ +++ +A GL
Sbjct: 223 DAVYASDRATFHTPFSHLGQ-SPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGL 281
Query: 462 IDGVFGKT--PKEFRQRLKERIKNFINS-KDFYEFIEKKKKERTSGEWLEE 509
+ VF + KE RLK K N+ + E I K+++E+ EE
Sbjct: 282 VTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEE 332
gi|3253198 (AF029714) PhaB [Pseudomonas putida]
Length = 263
Score = 47.6 bits (111), Expect = 3e-04
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 17/191 (8%)
Query: 285 TYREILYEEEDGIGFI------HFNFYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSE 338
T++ IL+ EDG+ F+ N +N AM E + E +K ++ ++LL +E
Sbjct: 2 TFQHILFSIEDGVAFLSLNRPEQLNSFNAAMHLE----VREALKQVRQSSDARVLLLTAE 57
Query: 339 D-FFSNGMNL---NTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGG 394
F G +L N +AE P + +I+ + L+ + + G A G
Sbjct: 58 GRGFCAGQDLSDRNVAPDAEVP--DLGESIDKFYNPLVRTLRDLPLPVICAVNGVAAGAG 115
Query: 395 VFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSK 454
+ L CDLV A + IG L T+ LP+ VG + K + + ++
Sbjct: 116 ANIPLACDLVLAGRSASFIQAFCKIG-LVPDSGGTWLLPRLVGMARAKALAMLGERLGAE 174
Query: 455 KAFEIGLIDGV 465
+A + GLI V
Sbjct: 175 QAQQWGLIHRV 185
dbj|BAA75330.1| (AB011837) enoyl CoA hydratase [Bacillus halodurans]
Length = 257
Score = 46.5 bits (108), Expect = 6e-04
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 294 EDGIGFIHFNFYN--GAMSTEQCYRLLETI-KYAKKRPVKAIVLLGSEDFFSNGMNLNTI 350
E +G I N A++ + ++E +Y + + ++ I++ GSE F+ G ++ +
Sbjct: 11 EGAVGVIQLNRPKVANALNRQMVQEIVEQAERYDRDQEIRVILVKGSERAFAAGADIREM 70
Query: 351 ENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFAREGV 410
E E+P + A D I K VA + G A GG LAL CDL+ A
Sbjct: 71 EG-ETPIRFELADPFADWDRFTRIHKP----MVAAVSGFALGGGFELALHCDLIVAATNA 125
Query: 411 VLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGV 465
++G L G+ T L + VG +K E + IS+++A +IG+I+ +
Sbjct: 126 RFGFPEVSLGVLPGAG-GTQLLTRAVGRKKALEWIWTGKHISAQEALQIGIINKI 179
emb|CAB07495| (Z92974) crotonase [Thermoanaerobacterium thermosaccharolyticum]
Length = 259
Score = 46.5 bits (108), Expect = 6e-04
Identities = 44/184 (23%), Positives = 82/184 (43%), Gaps = 8/184 (4%)
Query: 286 YREILYEEEDGIGFIHFNFYNG--AMSTEQCYRLLETIKYAKK-RPVKAIVLLGS-EDFF 341
+ +L ++DGI I N A++ E L + + + +K +++ GS E F
Sbjct: 3 FNNVLLNKDDGIALIIINRPKALNALNYETLKELDSVLDIVENDKEIKVLIITGSGEKTF 62
Query: 342 SNGMNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTC 401
G ++ + N +P + + + ++ K +A + G A GG L++ C
Sbjct: 63 VAGADIAEMSNM-TPLEA--KKFSLYGQKVFRKIEMLSKPVIAAVNGFALGGGCELSMAC 119
Query: 402 DLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGL 461
D+ A + +G + G T LP+ +G K KE++ I+S +A++IGL
Sbjct: 120 DIRIASKNAKFGQPEVGLGIIPGFS-GTQRLPRLIGTSKAKELIFTGDMINSDEAYKIGL 178
Query: 462 IDGV 465
I V
Sbjct: 179 ISKV 182
dbj|BAA17535| (D90906) naphthoate synthase [Synechocystis sp.]
Length = 275
Score = 46.5 bits (108), Expect = 6e-04
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 12/191 (6%)
Query: 284 KTYREILYEEEDGIGFIHFN--FYNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFF 341
K Y +ILY + GI I N A + + L + A++ +VLL
Sbjct: 7 KHYDDILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPH 66
Query: 342 SNGMNLNTIENAESPA-------DESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGG 394
S+G +S D+ +N +D + ++++ K+ +A + G A GG
Sbjct: 67 SDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLD--LQRLIRSMPKVVIALVAGYAIGGG 124
Query: 395 VFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENRMPISSK 454
L L CDL A + + +G+ G F + L + VG +K +E+ S++
Sbjct: 125 HVLHLVCDLTIAADNAIFGQTGPKVGSFDGG-FGSSYLARIVGQKKAREIWYLCRQYSAQ 183
Query: 455 KAFEIGLIDGV 465
+A +G+++ V
Sbjct: 184 EAERMGMVNTV 194
emb|CAA16000| (AL021184) echA12 [Mycobacterium tuberculosis]
Length = 285
Score = 46.1 bits (107), Expect = 8e-04
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 329 VKAIVLLGSEDFFSNGMNLNT------IENAESPADESWRNINAIDDVCEEILKTPDKLT 382
V+ +VL G+ FS G + + +EN P + R++ +DDV +L+ +
Sbjct: 64 VRVVVLTGAGRGFSPGADHKSAGVVPHVENLTRPT-YALRSMELLDDVIL-MLRRLHQPV 121
Query: 383 VAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGK 442
+A + G A GG+ LAL D+ A N G +Y LP+ +G +
Sbjct: 122 IAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAF 181
Query: 443 EVMENRMPISSKKAFEIGLI 462
E+M +S+++A IGL+
Sbjct: 182 EIMLTGRDVSAEEAERIGLV 201
sp|P55100|ECHP_CAVPO PEROXISOMAL BIFUNCTONAL ENZYME (PBE) (PBFE) [INCLUDES: ENOYL-COA
HYDRATASE ; 3,2-TRANS-ENOYL-COA ISOMERASE ;
3-HYDROXYACYL-COA DEHYDROGENASE ]
>gi|1363338|pir||S57651 enoyl-CoA
hydratase/3-hydroxyacyl-CoA dehydrogenase - guinea pig
>gi|2144123|pir||S68697 enoyl-CoA hydratase /
3-hydroxyacyl-CoA dehydrogenase - guinea pig
>gi|886862|emb|CAA59431| (X85112) enoyl-CoA
hydratase/3-hydroxyacyl-CoA dehydrogenase bifunctional
enzyme [Cavia porcellus] >gi|1181206|emb|CAA63403|
(X92742) 2-enoylacyl-CoA hydratase [Cavia porcellus]
Length = 726
Score = 45.7 bits (106), Expect = 0.001
Identities = 37/155 (23%), Positives = 74/155 (46%), Gaps = 7/155 (4%)
Query: 329 VKAIVLLGSEDFFSNGMNLNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQG 388
+K IV+ G+ + F G +++ A S+ + + + +E+ + +K VA +QG
Sbjct: 45 IKGIVISGANNIFCAGADIHGFS-----APLSFGTGSGLGPIVDEMQRY-EKPVVAAIQG 98
Query: 389 NAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKEVMENR 448
A GG+ L+L C A + +G L G+ T LP+ +G +++ +
Sbjct: 99 MALGGGLELSLGCHYRIAHAEARIGFPEVTLGILPGAR-GTQLLPRLIGVPAALDLITSG 157
Query: 449 MPISSKKAFEIGLIDGVFGKTPKEFRQRLKERIKN 483
I++ +A ++G++D V P E + ++I N
Sbjct: 158 RHITAGEALKLGILDKVVNSAPVEEAIKFAQKILN 192
sp|P34559|ECHM_CAEEL PROBABLE ENOYL-COA HYDRATASE, MITOCHONDRIAL >gi|482212|pir||S41006
hypothetical protein T05G5.6 - Caenorhabditis elegans
>gi|3879490|emb|CAA81594.1| (Z27079) similar to
enoyl-CoA hydratase; cDNA EST EMBL:M89264 comes from
this gene; cDNA EST CEMSA28R comes from this gene; cDNA
EST CEMSA28F comes from this gene; cDNA EST EMBL:D70224
comes from this gene; cDNA EST EMBL:D664...
Length = 288
Score = 45.7 bits (106), Expect = 0.001
Identities = 40/143 (27%), Positives = 64/143 (43%), Gaps = 12/143 (8%)
Query: 327 RPVKAIVLLGSEDFFSNGMNLNTIENAESPADESWR---NINAIDDVCEEILKTPDKLTV 383
+ V AIV+ GSE F+ G ++ + N E S N A+ DV K +
Sbjct: 78 KSVGAIVITGSERAFAAGADIKEMTNNEFATTFSGSFLSNWTAVSDV--------KKPVI 129
Query: 384 AGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNLYGSEFWTYTLPKRVGWEKGKE 443
A + G A GG LA+ CD+++A E NIG + G+ T + G E
Sbjct: 130 AAVNGFALGGGNELAMMCDIIYAGEKARFGQPEINIGTIPGAG-GTQRWARAAGKSFAME 188
Query: 444 VMENRMPISSKKAFEIGLIDGVF 466
V +++++A E G++ +F
Sbjct: 189 VCLTGNHVTAQEAKEHGIVSKIF 211
dbj|BAA78965.1| (AP000058) 253aa long hypothetical enoyl-CoA hydratase [Aeropyrum
pernix]
Length = 253
Score = 45.3 bits (105), Expect = 0.001
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 289 ILYEEEDGIGFIHFNFYN--GAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMN 346
++YEE +G+ I N A++ E +L E ++ A + +KA+V+ GS FS+G +
Sbjct: 9 VIYEERNGVAIIRLNRPEKLNALNLEAWMQLGEYLRKACRSGIKAVVITGSGRAFSSGDD 68
Query: 347 LNTIENAESPADESWRNINAIDDVCEEILKTPDKLTVAGMQGNAGAGGVFLALTCDLVFA 406
+ ++ + ES ++S + E + + + VA + G A GG + L D+V A
Sbjct: 69 IRSMYSLES-LEDSLSFFKTLHGALEAMARCRRPI-VAAVNGLAVGGGAEILLLADVVLA 126
sp|O83737|FMT_TREPA METHIONYL-TRNA FORMYLTRANSFERASE >gi|3323062 (AE001247)
methionyl-tRNA formyltransferase (fmt) [Treponema
pallidum]
Length = 319
Score = 45.3 bits (105), Expect = 0.001
Identities = 55/224 (24%), Positives = 93/224 (40%), Gaps = 11/224 (4%)
Query: 41 EAAELYKPDLIIAPFLKRKI--PQEVWKKYKTLI-IHPGP-PGDRGPNALDWAIMKGERI 96
+A E +PD+++ F KI P+ + + I +HP P RG + AI+ G+
Sbjct: 79 DAVEALRPDVLVC-FAYGKIFGPRFLALFPRGAINVHPSLLPRWRGSTPVPAAILAGDCE 137
Query: 97 WGVTLLEASEEYDAGDVWAYRTFPMRFARKASIYRNEVTEGVVECVLEALENFERGDFKP 156
GVTL EE DAGD+ A + + ++ + V + L ER P
Sbjct: 138 TGVTLQYIGEEMDAGDILAQSRVQLDGTETTGALLSRLSLVAADLVDDVLVGVERHTLAP 197
Query: 157 TPQ--KEHWWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYP 214
Q + + K+ +E+ DW + + RK+ A PG + G+ + + A
Sbjct: 198 AAQDHSQATFCGKLCREMGLADW-SNPAVVLERKIRAFTPWPGLFTYKDGERIAILQARS 256
Query: 215 EEEL---KGKPGEVLALRDEAVCIGTRDGAVWITHMRERKKESI 255
E G VLA V + T DG + + ++ K+ +
Sbjct: 257 CESSFVPLAPVGTVLAADKNGVFVQTGDGVLSLLQLQRSGKKPL 300
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.319 0.138 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168397190
Number of Sequences: 444417
Number of extensions: 7651141
Number of successful extensions: 21041
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 20928
Number of HSP's gapped (non-prelim): 200
length of query: 562
length of database: 136,724,657
effective HSP length: 54
effective length of query: 508
effective length of database: 112,726,139
effective search space: 57264878612
effective search space used: 57264878612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 72 (32.5 bits)
