Score E
Sequences producing significant alignments: (bits) Value
gi|2983624 (AE000727) rare lipoprotein A [Aquifex aeolicus] 476 e-133
gi|2983784 (AE000737) rare lipoprotein A [Aquifex aeolicus] 102 3e-21
dbj|BAA10397| (D64002) rare lipoprotein A [Synechocystis sp.] 102 4e-21
gi|3323317 (AE001266) rare lipoprotein A, putative [Trepone... 98 9e-20
gi|2688668 (AE001173) rare lipoprotein A (rlpA) [Borrelia b... 90 2e-17
gb|AAD32233.1|AF147448_4 (AF147448) rare lipoprotein A [Pse... 89 3e-17
sp|Q57092|Y030_HAEIN HYPOTHETICAL PROTEIN HI0030 PRECURSOR ... 88 6e-17
emb|CAA14847| (AJ235271) RARE LIPOPROTEIN A PRECURSOR (rlpA... 86 2e-16
gi|4156099 (AE001569) putative Outer membrane protein [Heli... 85 5e-16
gb|AAD08608.1| (AE000654) rare lipoprotein A (rlpA) [Helico... 85 7e-16
sp|P10100|RLPA_ECOLI RARE LIPOPROTEIN A PRECURSOR >gi|72594... 58 8e-08
sp|P73455|YV77_SYNY3 HYPOTHETICAL 9.9 KD PROTEIN SSL3177 >g... 56 3e-07
sp|P47299|MANB_MYCGE PHOSPHOMANNOMUTASE (PMM) >gi|1361754|p... 34 1.2
gi|2983624 (AE000727) rare lipoprotein A [Aquifex aeolicus]
Length = 226
Score = 476 bits (1211), Expect = e-133
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MERFLGFRTPLGALGVVILLTLILSSCSVKTSYKEKGRVYNGKCPEYAKVWVHYCPTKYA 60
MERFLGFRTPLGALGVVILLTLILSSCSVKTSYKEKGRVYNGKCPEYAKVWVHYCPTKYA
Sbjct: 1 MERFLGFRTPLGALGVVILLTLILSSCSVKTSYKEKGRVYNGKCPEYAKVWVHYCPTKYA 60
Query: 61 YTDRYQHLSKVKIVNPRNGKSVKISLRLNKKVRGICLPKRLKKYLGKPFLGKVYLLRCGE 120
YTDRYQHLSKVKIVNPRNGKSVKISLRLNKKVRGICLPKRLKKYLGKPFLGKVYLLRCGE
Sbjct: 61 YTDRYQHLSKVKIVNPRNGKSVKISLRLNKKVRGICLPKRLKKYLGKPFLGKVYLLRCGE 120
Query: 121 NGVKKCPKYIRGYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRK 180
NGVKKCPKYIRGYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRK
Sbjct: 121 NGVKKCPKYIRGYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRK 180
Query: 181 VIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCGY 226
VIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCGY
Sbjct: 181 VIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCGY 226
gi|2983784 (AE000737) rare lipoprotein A [Aquifex aeolicus]
Length = 171
Score = 102 bits (252), Expect = 3e-21
Identities = 52/102 (50%), Positives = 68/102 (65%)
Query: 123 VKKCPKYIRGYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRKVI 182
VK+ +Y GYASWYG KFH RKTA+G RFN + AA R GT + V NL+NG+ +
Sbjct: 49 VKRDCRYEVGYASWYGPKFHYRKTANGERFNMFKLTAASRTFSLGTYVLVYNLENGKFTV 108
Query: 183 VKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRC 224
V++ DRGPYV GR +DLS AAA ++GM++ GV L+C
Sbjct: 109 VRINDRGPYVDGRIIDLSMAAADEIGMLKKGVAKVLVIPLKC 150
dbj|BAA10397| (D64002) rare lipoprotein A [Synechocystis sp.]
Length = 321
Score = 102 bits (251), Expect = 4e-21
Identities = 47/83 (56%), Positives = 62/83 (74%)
Query: 132 GYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRKVIVKVVDRGPY 191
G ASWYG FHGR+TA+G RFNQ+ AAHR LPFGT ++V NL+NG+ V+V++ DRGP+
Sbjct: 230 GIASWYGPGFHGRRTANGERFNQNALTAAHRTLPFGTRVKVTNLRNGQSVVVRINDRGPF 289
Query: 192 VRGRHLDLSYAAAKKLGMIRDGV 214
GR +DLS AA+ +G+ GV
Sbjct: 290 TGGRVIDLSAGAARAIGIHSSGV 312
gi|3323317 (AE001266) rare lipoprotein A, putative [Treponema pallidum]
Length = 318
Score = 97.5 bits (239), Expect = 9e-20
Identities = 47/83 (56%), Positives = 60/83 (71%)
Query: 132 GYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRKVIVKVVDRGPY 191
GYAS+Y F+GR TASG F+ + Y AAHR LPFGT++E+ NL NG+KVIV++ DRGPY
Sbjct: 30 GYASYYAESFNGRPTASGEIFDMNAYTAAHRTLPFGTVVELTNLDNGKKVIVRINDRGPY 89
Query: 192 VRGRHLDLSYAAAKKLGMIRDGV 214
R +D+S AAA L M+ GV
Sbjct: 90 AANREIDVSKAAAVALDMLNAGV 112
gi|2688668 (AE001173) rare lipoprotein A (rlpA) [Borrelia burgdorferi]
Length = 275
Score = 90.1 bits (220), Expect = 2e-17
Identities = 43/91 (47%), Positives = 61/91 (66%)
Query: 132 GYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRKVIVKVVDRGPY 191
G ASWYG FHG+ TA+G +F+ AAH+ LPF T ++V NL N R V+V++ DRGP+
Sbjct: 47 GLASWYGEAFHGKTTANGEKFDMMALTAAHKELPFNTTVKVTNLLNNRSVVVRINDRGPF 106
Query: 192 VRGRHLDLSYAAAKKLGMIRDGVIPFEAKVL 222
+ R +DLS AA+KL + GV P + +V+
Sbjct: 107 RKDRIIDLSKYAAEKLDFLGIGVAPVKIEVI 137
gb|AAD32233.1|AF147448_4 (AF147448) rare lipoprotein A [Pseudomonas aeruginosa]
Length = 342
Score = 88.9 bits (217), Expect = 3e-17
Identities = 43/82 (52%), Positives = 56/82 (67%)
Query: 132 GYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRKVIVKVVDRGPY 191
G ASWYG KFHG+ TA+G ++ + AAH+ LP + + V NL NG+ VIV+V DRGP+
Sbjct: 102 GTASWYGTKFHGQATANGETYDLYGMTAAHKTLPLPSYVRVTNLDNGKSVIVRVNDRGPF 161
Query: 192 VRGRHLDLSYAAAKKLGMIRDG 213
R +DLS+AAAKKLG G
Sbjct: 162 YSDRVIDLSFAAAKKLGYAETG 183
sp|Q57092|Y030_HAEIN HYPOTHETICAL PROTEIN HI0030 PRECURSOR >gi|1075200|pir||A64044 rare
lipoprotein A (rlpA) homolog - Haemophilus influenzae
(strain Rd KW20) >gi|1572975 (U32688) lipoprotein,
putative [Haemophilus influenzae Rd]
Length = 287
Score = 88.2 bits (215), Expect = 6e-17
Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 111 GKVYLLRCGENGVKKCPKYIR-GYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTL 169
G+ Y + G + YI+ G AS+Y KF GRKTASG +N ++ AAH+ LP +
Sbjct: 54 GQTYTTKSGN----EAKSYIKEGLASYYHLKFDGRKTASGDVYNSKQFTAAHKTLPINSY 109
Query: 170 LEVKNLKNGRKVIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGV 214
V NL N RKVIV++ DRGP+ R +DLS+AAAK++G+I G+
Sbjct: 110 ALVTNLHNNRKVIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGI 154
emb|CAA14847| (AJ235271) RARE LIPOPROTEIN A PRECURSOR (rlpA) [Rickettsia
prowazekii]
Length = 320
Score = 86.2 bits (210), Expect = 2e-16
Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 104 YLGKPFLGKVYLLRCGENGVKKCPKYIR--GYASWYGGK---FHGRKTASGIRFNQHEYY 158
Y+G +GK Y ++ G+ PKY GYASWYGG+ FHG+ TA+G RFN++
Sbjct: 140 YIGHYKVGKNYKIK-GKIYKPHTPKYFTETGYASWYGGRKDGFHGKTTANGDRFNRNLLT 198
Query: 159 AAHRYLPFGTLLEVKNLKNGRKVIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGV 214
AAH+ LP L++V N N + VI+ V DRGP+ + R +D+S AA+ L GV
Sbjct: 199 AAHKTLPLPCLVKVTNKVNNKSVILMVNDRGPFKKNRIIDVSQKAAEILAFKNQGV 254
gi|4156099 (AE001569) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 314
Score = 85.0 bits (207), Expect = 5e-16
Identities = 40/94 (42%), Positives = 59/94 (62%)
Query: 132 GYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRKVIVKVVDRGPY 191
G ASWYG FH +KT++G +N + + AAH+ LP T+++V N+ N IV++ DRGP+
Sbjct: 117 GIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINVDNNSSTIVRINDRGPF 176
Query: 192 VRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCG 225
V R +DLS AAA+ + M++ G VL G
Sbjct: 177 VSNRIIDLSNAAARDIDMVQKGTASVRLIVLGFG 210
gb|AAD08608.1| (AE000654) rare lipoprotein A (rlpA) [Helicobacter pylori 26695]
Length = 315
Score = 84.7 bits (206), Expect = 7e-16
Identities = 40/94 (42%), Positives = 59/94 (62%)
Query: 132 GYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRKVIVKVVDRGPY 191
G ASWYG FH +KT++G +N + + AAH+ LP T+++V N+ N IV++ DRGP+
Sbjct: 118 GVASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINVDNNLSTIVRINDRGPF 177
Query: 192 VRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCG 225
V R +DLS AAA+ + M++ G VL G
Sbjct: 178 VSDRIIDLSNAAARDIDMVKKGTASVRLIVLGFG 211
sp|P10100|RLPA_ECOLI RARE LIPOPROTEIN A PRECURSOR >gi|72594|pir||LPECRA lipoprotein rlpA
precursor - Escherichia coli >gi|147660 (M18276) 36kd
lipoprotein (rlpA) precursor [Escherichia coli]
>gi|1651260|dbj|BAA35276| (D90703) Lipoprotein RlpA
precursor. [Escherichia coli] >gi|1651265|dbj|BAA35280|
(D90704) Lipoprotein RlpA precursor. [Escherichia coli]
>gi|1778550 (U82598) rare lipoprotein A precursor
[Escherichia coli] >gi|1786852 (AE000168) a minor
lipoprotein [Escherichia coli]
Length = 362
Score = 57.8 bits (137), Expect = 8e-08
Identities = 31/76 (40%), Positives = 43/76 (55%)
Query: 132 GYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRKVIVKVVDRGPY 191
G A+ Y + TASG F+ + AAH LP + + NL NGR ++V++ DRGPY
Sbjct: 81 GLAAIYDAEPGSNLTASGEAFDPTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPY 140
Query: 192 VRGRHLDLSYAAAKKL 207
R + LS AAA +L
Sbjct: 141 GNDRVISLSRAAADRL 156
sp|P73455|YV77_SYNY3 HYPOTHETICAL 9.9 KD PROTEIN SSL3177 >gi|1652574|dbj|BAA17495|
(D90906) rare lipoprotein A [Synechocystis sp.]
Length = 90
Score = 55.8 bits (132), Expect = 3e-07
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 134 ASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRKVIVKVVDRGPYVR 193
A++YG +F GRK A+G +N AAH LP GT + V N + G+ V+V V DR
Sbjct: 6 ATFYGNQFVGRKMANGQVYNHGRMVAAHPSLPLGTRVRVTNRRTGKSVVVTVSDR----C 61
Query: 194 GRHLDLSYAAAKKLGMIRDGVIP 216
+DLS +A +++ R G +P
Sbjct: 62 NCSIDLSRSAFQQIANPRKGRVP 84
sp|P47299|MANB_MYCGE PHOSPHOMANNOMUTASE (PMM) >gi|1361754|pir||H64205 phosphomannomutase
(EC 5.4.2.8) - Mycoplasma genitalium (SGC3) >gi|1045726
(U39684) phosphomannomutase (manB) [Mycoplasma
genitalium]
Length = 550
Score = 34.0 bits (76), Expect = 1.2
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Query: 51 WVHYCPTKYAYTDRYQHLSKVKIVNPRNGKSVKISLRLNKKVRGICLPKRLKKYLG 106
+VH + Y + ++ L KV ++N N K +K+ +CL +R KYLG
Sbjct: 196 FVHTLDNEKVYKNYFRELKKVLVINNNNFKDIKVVFS-GLNGTSVCLMQRFLKYLG 250
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.324 0.143 0.447
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66190692
Number of Sequences: 444417
Number of extensions: 2914272
Number of successful extensions: 5485
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5469
Number of HSP's gapped (non-prelim): 16
length of query: 226
length of database: 136,724,657
effective HSP length: 48
effective length of query: 178
effective length of database: 115,392,641
effective search space: 20539890098
effective search space used: 20539890098
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 69 (31.3 bits)
