Score E
Sequences producing significant alignments: (bits) Value
gi|2983639 (AE000727) hypothetical protein [Aquifex aeolicus] 302 1e-81
gi|2649595 (AE001035) conserved hypothetical protein [Archa... 89 2e-17
sp|Q55129|Y400_SYNY3 HYPOTHETICAL 18.3 KD PROTEIN SLL0400 >... 61 5e-09
emb|CAB44666.1| (AJ242867) hypothetical protein [Anabaena P... 58 4e-08
emb|CAA10006| (AJ012408) hypothetical protein [Anabaena PCC... 50 1e-05
emb|CAB50877.1| (AL096844) hypothetical protein [Streptomyc... 49 2e-05
sp|Q54751|Y400_SYNP2 HYPOTHETICAL 18.1 KD PROTEIN IN PSAI 5... 49 2e-05
emb|CAA96662.1| (Z72511) similar to glutathione S-transfera... 46 1e-04
gi|2984221 (AE000766) phosphoglycerate mutase [Aquifex aeol... 45 3e-04
dbj|BAA81500.1| (AP000064) 140aa long hypothetical protein ... 45 4e-04
emb|CAA15939.1| (AL021106) /prediction=(method:""genscan"",... 45 4e-04
dbj|BAA16194| (D90864) similar to [SwissProt Accession Numb... 45 4e-04
sp|P76502|SIXA_ECOLI PHOSPHOHISTIDINE PHOSPHATASE SIXA (RX6... 45 4e-04
gb|AAD36444.1|AE001791_6 (AE001791) phosphoglycerate mutase... 43 0.001
ref|NP_014585.1|GPM3| phosphoglycerate mutase; Gpm3p >gi|24... 39 0.019
emb|CAB41335.1| (AL049711) putative protein [Arabidopsis th... 39 0.025
ref|NP_014291.1|YNL108C| Ynl108cp >gi|1730762|sp|P53929|YNK... 39 0.025
gi|4151123 (U73808) 2,3-PDG dependent phosphoglycerate muta... 38 0.033
emb|CAB03118.1| (Z81086) predicted using Genefinder [Caenor... 38 0.033
sp|P36942|PMG2_ECOLI PROBABLE PHOSPHOGLYCERATE MUTASE 2 (PH... 38 0.033
pir||S56619 hypothetical protein o215b - Escherichia coli >... 38 0.033
emb|CAB16450| (Z99263) hypothetical protein MLCB637.35c [My... 38 0.056
emb|CAA18344| (AL022268) hypothetical protein SC4H2.29 [Str... 37 0.096
sp|P33158|PMGY_STRCO PHOSPHOGLYCERATE MUTASE (PHOSPHOGLYCER... 37 0.096
pdb|1QHF|A Chain A, Yeast Phosphoglycerate Mutase-3pg Compl... 35 0.28
gi|2984053 (AE000754) phosphoglycerate mutase [Aquifex aeol... 35 0.28
emb|CAB05428| (Z83018) mutT1 [Mycobacterium tuberculosis] 35 0.28
pdb|4PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycera... 35 0.28
ref|NP_012770.1|GPM1| Phosphoglycerate mutase; Gpm1p >gi|54... 35 0.28
emb|CAA22497.1| (AL034491) putative phosphoglycerate mutase... 35 0.37
ref|NP_014753.1|YOR110W| RNA polymerase III transcription i... 35 0.37
gb|AAF17689.1|AC009243_16 (AC009243) F28K19.26 [Arabidopsis... 34 0.63
emb|CAB61320.1| (AL132997) putative phosphatase [Streptomyc... 34 0.83
gb|AAF12185.1|AE001862_11 (AE001862) phosphoglycerate mutas... 33 1.4
sp|Q46267|PFLA_CLOPA PYRUVATE FORMATE-LYASE ACTIVATING ENZY... 33 1.4
ref|NP_014267.1|YNL132W| Ynl132wp >gi|1730777|sp|P53914|YNN... 33 1.4
gi|4210989 (AF121781) unknown [Homo sapiens] 32 1.9
emb|CAA74541.1| (Y14084) hypothetical protein [Bacillus sub... 32 1.9
pir||S09020 Calcimedin, 32K - chicken (fragments) 32 1.9
dbj|BAA16651| (D90899) phosphoglycerate mutase [Synechocyst... 32 2.4
sp|P14688|GRSB_BACBR GRAMICIDIN S SYNTHETASE II [INCLUDES: ... 32 2.4
pir||JX0340 gramicidin S synthase 2 - Bacillus brevis >gi|5... 32 2.4
emb|CAB60484.1| (AL132858) Y113G7A.14 [Caenorhabditis elegans] 32 3.2
pdb|3PGM| Phosphoglycerate Mutase (E.C.2.7.5.3) De-Phosph... 32 3.2
gb|AAD26531.1|AF087141_1 (AF087141) valyl-tRNA synthetase [... 31 4.2
gi|3986754 (AF109905) G7A [Mus musculus] 31 4.2
gb|AAC35225.1| (AC005496) hypothetical protein [Arabidopsis... 31 4.2
gi|2688689 (AE001175) ABC transporter, ATP-binding protein ... 31 4.2
sp|Q21122|F26_CAEEL PUTATIVE 6PF-2-K/FRU-2,6-P2ASE [INCLUDE... 31 4.2
sp|Q04462|SYV_RAT VALYL-TRNA SYNTHETASE (VALINE--TRNA LIGAS... 31 4.2
gi|2088668 (AF003130) similar to Achlya ambisexualis anther... 31 5.5
emb|CAB06204| (Z83864) hypothetical protein Rv3837c [Mycoba... 31 5.5
sp|P15259|PMGM_HUMAN PHOSPHOGLYCERATE MUTASE, MUSCLE FORM (... 31 5.5
sp|P25806|TPR_PORGI THIOL PROTEASE >gi|282149|pir||S27608 c... 31 5.5
emb|CAA19205.1| (AL023635) pyruvate dehydrogenase e1 compon... 31 7.2
sp|O70250|PMGM_MOUSE PHOSPHOGLYCERATE MUTASE, MUSCLE FORM (... 31 7.2
gb|AAC06151.1| (AC003680) putative protein kinase [Arabidop... 31 7.2
sp|P96121|PMGY_TREPA PHOSPHOGLYCERATE MUTASE (PHOSPHOGLYCER... 31 7.2
sp|Q59757|CAPP_RHOOB PHOSPHOENOLPYRUVATE CARBOXYLASE (PEPCA... 31 7.2
gi|1145408 (U38783) brefeldin A resistance protein [Schizos... 31 7.2
pir||S50326 phosphoglyceromutase - fruit fly (Drosophila me... 31 7.2
prf||2023203A phosphoglyceromutase [Drosophila melanogaster] 31 7.2
ref|NP_000281.1|| phosphoglycerate mutase 2 (muscle) >gi|18... 31 7.2
emb|CAA74705.1| (Y14329) threonyl-tRNA synthetase [Arabidop... 30 9.4
gi|387016 (J05073) phosphoglycerate mutase [Homo sapiens] 30 9.4
sp|P16290|PMGM_RAT PHOSPHOGLYCERATE MUTASE, MUSCLE FORM (PG... 30 9.4
sp|P53531|PMGY_MYCLE PHOSPHOGLYCERATE MUTASE (PHOSPHOGLYCER... 30 9.4
gi|2983639 (AE000727) hypothetical protein [Aquifex aeolicus]
Length = 149
Score = 302 bits (764), Expect = 1e-81
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MFWVFLVRHGEAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTA 60
MFWVFLVRHGEAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTA
Sbjct: 1 MFWVFLVRHGEAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTA 60
Query: 61 KIIANILGVEKIRETELLLPNTDPKETSKLIDGKNVVLCGHLPNLARLFSLLYLSEDNER 120
KIIANILGVEKIRETELLLPNTDPKETSKLIDGKNVVLCGHLPNLARLFSLLYLSEDNER
Sbjct: 61 KIIANILGVEKIRETELLLPNTDPKETSKLIDGKNVVLCGHLPNLARLFSLLYLSEDNER 120
Query: 121 RVNLSTSGALVLKWKDFWVLELLLEPSVL 149
RVNLSTSGALVLKWKDFWVLELLLEPSVL
Sbjct: 121 RVNLSTSGALVLKWKDFWVLELLLEPSVL 149
gi|2649595 (AE001035) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 151
Score = 88.9 bits (217), Expect = 2e-17
Identities = 54/144 (37%), Positives = 88/144 (60%), Gaps = 8/144 (5%)
Query: 4 VFLVRHGEAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKII 63
++L++HG+A P+EVDP+R L+E+G K+ E++A L+ G++ E IY S K RA+QTA+I+
Sbjct: 3 LYLMQHGKAKPKEVDPERNLSEEGVKEVERVAAFLEKAGIRVERIYHSGKRRAEQTAEIV 62
Query: 64 ANILGVEKIRETELLLPNTDPKETSKLID--GKNVVLCGHLPNLARLFSLLYLSEDNERR 121
A LGVE + E L P D ++ ++ ++V+L GHLP+L+RL + L +
Sbjct: 63 AKHLGVE-AKMAEGLDPLADIGIWAERLEKLDEDVMLVGHLPHLSRLANYLLSGNPDLDA 121
Query: 122 VNLSTSGALVL-----KWKDFWVL 140
V + G + L KW+ W +
Sbjct: 122 VAFTFGGVVCLEREERKWRLLWAV 145
sp|Q55129|Y400_SYNY3 HYPOTHETICAL 18.3 KD PROTEIN SLL0400 >gi|1001123|dbj|BAA10263|
(D64001) hypothetical protein [Synechocystis sp.]
Length = 164
Score = 60.9 bits (145), Expect = 5e-09
Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 4 VFLVRHG---EAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTA 60
++L+RHG E P+ D R LT+KG+ T+++A+ L+ GV+ +LI TSP +RA+QTA
Sbjct: 3 LYLIRHGIAQEQSPDIPDGDRQLTKKGKDKTQRVAQRLQAIGVEFDLILTSPLVRAQQTA 62
Query: 61 KIIANILGVEKIRETELLLPN-------TDPKETSKLIDGKNVVLCGHLPNLA 106
+I+ + ++ L P D KE + + + L GH P+LA
Sbjct: 63 QILMDQGLAPQLETFSSLAPGEDIPQGINDLKEEYRHRSHRCLALVGHQPDLA 115
emb|CAB44666.1| (AJ242867) hypothetical protein [Anabaena PCC7120]
Length = 178
Score = 57.8 bits (137), Expect = 4e-08
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 4 VFLVRHGEAYPEEV---DPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTA 60
++L+RHG A ++ D +R LT++G++ TEK+A L G + +LI TSP +RA+QTA
Sbjct: 3 LYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTA 62
Query: 61 KIIANILGVEKIRETELLLPNTDP-------KETSKLIDGKNVVLCGHLPNLARLFSLLY 113
+I+ ++ E+ L PN + + + + + GH P L+ +L
Sbjct: 63 EILLASGLSCQLEESNHLAPNGNIFNWLDYWLKPKNFPENPQIAIVGHEPCLSNWTEILL 122
Query: 114 LSEDNERRVNLSTSGALVLK 133
E + V L +G + LK
Sbjct: 123 WGEAKDSLV-LKKAGMIGLK 141
emb|CAA10006| (AJ012408) hypothetical protein [Anabaena PCC7120]
Length = 178
Score = 50.0 bits (117), Expect = 1e-05
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 4 VFLVRHGEAYPEEV---DPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTA 60
++L+RHG A ++ D +R L K K +K+A L G + +LI TSP +RA+QTA
Sbjct: 3 LYLIRHGIAEAQKTGIKDEERDLPRKENKKLKKVAYRLVKLGRQFDLIVTSPLIRARQTA 62
Query: 61 KIIANILGVEKIRETELLLPNTDP-------KETSKLIDGKNVVLCGHLPNLARLFSLLY 113
+I+ ++ E+ L PN + + + + + GH P L+ +L
Sbjct: 63 EILLASGLSCQLEESNHLAPNGNIFNWLDYWLKPKNFPENPQIAIVGHEPCLSNWTEILL 122
Query: 114 LSEDNERRVNLSTSGALVLK 133
E + V L +G + LK
Sbjct: 123 WGEAKDSLV-LKKAGMIGLK 141
emb|CAB50877.1| (AL096844) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 172
Score = 49.2 bits (115), Expect = 2e-05
Identities = 34/131 (25%), Positives = 61/131 (45%), Gaps = 6/131 (4%)
Query: 4 VFLVRHGEA-YPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKI 62
+ L RH +A +P+ D +RPL ++GR D + + L + GV + S R ++T K+
Sbjct: 9 IVLFRHAKADWPQVTDHERPLADRGRMDAAEAGRRLADTGVPIDQALCSTSARTRETWKL 68
Query: 63 IANILGVEKIRETELLLPNTDPKETSKLI-----DGKNVVLCGHLPNLARLFSLLYLSED 117
E + + P E ++ D +NV++ GH P + L +L S +
Sbjct: 69 AVQEFPHRPKTVYEERIYDASPGELIAVLNETPDDLRNVLVIGHNPGMEALTEILAGSAE 128
Query: 118 NERRVNLSTSG 128
+E R ++ G
Sbjct: 129 DEVRERINRRG 139
sp|Q54751|Y400_SYNP2 HYPOTHETICAL 18.1 KD PROTEIN IN PSAI 5'REGION >gi|1374758
(U58035) similar to open reading frame sll0400 of
Synechocystis sp. PCC 6803, encoded by GenBank
Accession Number D64001; orf165 [Synechococcus
PCC7002]
Length = 165
Score = 48.8 bits (114), Expect = 2e-05
Identities = 30/66 (45%), Positives = 41/66 (61%), Gaps = 7/66 (10%)
Query: 4 VFLVRHGEA-----YPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
++ RHG A Y E+ D RPLT KG T+ +A+ L+ G+ E I TSP LRA+Q
Sbjct: 3 LYFFRHGIAADRADYAEDGD--RPLTTKGETRTKLVAQRLQQLGLHFEGILTSPLLRARQ 60
Query: 59 TAKIIA 64
TA+I+A
Sbjct: 61 TAEILA 66
emb|CAA96662.1| (Z72511) similar to glutathione S-transferase; cDNA EST EMBL:C10603
comes from this gene; cDNA EST EMBL:C12370 comes from
this gene; cDNA EST yk276e8.3 comes from this gene; cDNA
EST yk276e8.5 comes from this gene; cDNA EST y...
Length = 629
Score = 46.5 bits (108), Expect = 1e-04
Identities = 24/59 (40%), Positives = 34/59 (56%)
Query: 22 PLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKIIANILGVEKIRETELLLP 80
P+T G+ + I +AL+N G++P +I+ SP LR QTA IA G + E LL P
Sbjct: 406 PITNIGKYSAQLIGRALRNRGIEPGVIFCSPTLRTLQTAAAIAKSTGARILVEPGLLEP 464
gi|2984221 (AE000766) phosphoglycerate mutase [Aquifex aeolicus]
Length = 212
Score = 44.9 bits (104), Expect = 3e-04
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 1 MFWVFLVRHGEA-------YPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPK 53
M + +VRH E+ Y +DP LTE+G + ++AKALK + +++++SP
Sbjct: 1 MLKLIVVRHAESEWNPIGRYQGLLDPD--LTERGVEQARRLAKALKKENI--QVLFSSPL 56
Query: 54 LRAKQTAKIIANILGVEKIRETELL 78
R +TAKII +G+E I E ++
Sbjct: 57 KRTFKTAKIIGEEIGLEPIPEERVI 81
dbj|BAA81500.1| (AP000064) 140aa long hypothetical protein [Aeropyrum pernix]
Length = 140
Score = 44.5 bits (103), Expect = 4e-04
Identities = 35/88 (39%), Positives = 47/88 (52%), Gaps = 5/88 (5%)
Query: 18 DPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKIIANILGVEKIRETEL 77
D +R LTE+G D E A+ L+ GV I TSP RA QTA+I+A L +E E
Sbjct: 6 DRERRLTEEGAADVECAARLLRGRGVVR--ILTSPYRRAIQTAEILARTLDLE-YSVVEW 62
Query: 78 LLPNT--DPKETSKLIDGKNVVLCGHLP 103
L P++ ++ +L G VL GH P
Sbjct: 63 LAPDSGISVEDLPRLGVGDGYVLVGHNP 90
emb|CAA15939.1| (AL021106) /prediction=(method:""genscan"", version:""1.0"",
score:""113.71""); /prediction=(method:""genefinder"",
version:""084""); /match=(desc:""LD30851.5prime LD
Drosophila melanogaster embryo pOT2 Drosophila
melanogaste...
Length = 289
Score = 44.5 bits (103), Expect = 4e-04
Identities = 26/69 (37%), Positives = 37/69 (52%), Gaps = 1/69 (1%)
Query: 4 VFLVRHGEAYPE-EVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKI 62
+ LVRHGE + D LTE+GRK E K L G+K + + S +RA++T+ I
Sbjct: 89 IILVRHGEYLDVGDSDDTHHLTERGRKQAEFTGKRLCELGIKWDKVVASTMVRAQETSDI 148
Query: 63 IANILGVEK 71
I + EK
Sbjct: 149 ILKQIDFEK 157
dbj|BAA16194| (D90864) similar to [SwissProt Accession Number P44164]
[Escherichia coli] >gi|1799738|dbj|BAA16200| (D90865)
similar to [SwissProt Accession Number P44164]
[Escherichia coli]
Length = 161
Score = 44.5 bits (103), Expect = 4e-04
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 4 VFLVRHGEAYPEEV-DPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKI 62
VF++RHG+A + D RPLT G ++ +A LK V+ E + SP LRA+QT +
Sbjct: 3 VFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLEE 62
Query: 63 IANILGVEKIRETELLLPNTDPKETSKLIDG----------KNVVLCGHLPNLARLFSLL 112
+ + L + E +LP P L+ +V++ HLP + L + L
Sbjct: 63 VGDCLNLPSSAE---VLPELKPCGDVGLVSAYLQALTNEGVASVLVISHLPLVGYLVAEL 119
sp|P76502|SIXA_ECOLI PHOSPHOHISTIDINE PHOSPHATASE SIXA (RX6) >gi|1788681 (AE000322) orf,
hypothetical protein [Escherichia coli]
>gi|2897694|dbj|BAA24878| (D86298) RX6 [Escherichia
coli]
Length = 161
Score = 44.5 bits (103), Expect = 4e-04
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 4 VFLVRHGEAYPEEV-DPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKI 62
VF++RHG+A + D RPLT G ++ +A LK V+ E + SP LRA+QT +
Sbjct: 3 VFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLEE 62
Query: 63 IANILGVEKIRETELLLPNTDPKETSKLIDG----------KNVVLCGHLPNLARLFSLL 112
+ + L + E +LP P L+ +V++ HLP + L + L
Sbjct: 63 VGDCLNLPSSAE---VLPELTPCGDVGLVSAYLQALTNEGVASVLVISHLPLVGYLVAEL 119
gb|AAD36444.1|AE001791_6 (AE001791) phosphoglycerate mutase [Thermotoga maritima]
Length = 201
Score = 43.4 bits (100), Expect = 0.001
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 14/88 (15%)
Query: 4 VFLVRHGEAYPEEVDPQR-----PLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
++L+RHGE E + PL E+GR+ K+A +LK + + IY+SP R+ +
Sbjct: 3 LYLIRHGETIWNEKGLWQGVTDVPLNERGREQARKLANSLK----RVDAIYSSPLKRSLE 58
Query: 59 TAKIIA-----NILGVEKIRETELLLPN 81
TA+ IA I+ E +RE E+ L N
Sbjct: 59 TAEEIARRFEKEIIVEEDLRECEISLWN 86
ref|NP_014585.1|GPM3| phosphoglycerate mutase; Gpm3p >gi|2499506|sp|Q12326|PMG3_YEAST
PHOSPHOGLYCERATE MUTASE 3 (PHOSPHOGLYCEROMUTASE 3)
(PGAM 3) (MPGM 3) (BPG-DEPENDENT PGAM 3)
>gi|2132391|pir||S61723 phosphoglycerate mutase (EC
5.4.2.1) GPM3 - yeast (Saccharomyces cerevisiae)
>gi|984186|emb|CAA62530| (X91067) phosphoglycerate
mutase [Saccharomyces cerevisiae]
>gi|1419867|emb|CAA99064| (Z74798) ORF YOL056w
[Saccharomyces cerevisiae]
Length = 303
Score = 39.1 bits (89), Expect = 0.019
Identities = 30/97 (30%), Positives = 48/97 (48%), Gaps = 16/97 (16%)
Query: 2 FWVFLVRHGEAYPEE-------VDPQRPLTEKGRKDTEKIAKALKNFGVK-----PELIY 49
F +F++RHG++ +D Q LTEKG+ AK +K F P++ Y
Sbjct: 7 FKLFILRHGQSELNSENIFCGWIDAQ--LTEKGKSQARHSAKLIKQFCDSNNISLPQIGY 64
Query: 50 TSPKLRAKQTAKIIANILGVEKIRETELLLPNTDPKE 86
TS +R +QT +I LG++ ++ NT+ KE
Sbjct: 65 TSRLIRTQQTMDVILEELGLK--HTNYVITTNTNIKE 99
emb|CAB41335.1| (AL049711) putative protein [Arabidopsis thaliana]
Length = 546
Score = 38.7 bits (88), Expect = 0.025
Identities = 17/45 (37%), Positives = 27/45 (59%)
Query: 17 VDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAK 61
+D RPL++ G D K+A+ L + G P+LI +S R ++T K
Sbjct: 389 IDHDRPLSKTGEADAAKVAQILSSLGWLPQLILSSDATRTRETLK 433
ref|NP_014291.1|YNL108C| Ynl108cp >gi|1730762|sp|P53929|YNK8_YEAST HYPOTHETICAL 30.7 KD
PROTEIN IN CYB5-LEU4 INTERGENIC REGION
>gi|2131889|pir||S63049 hypothetical protein YNL108c -
yeast (Saccharomyces cerevisiae)
>gi|1183965|emb|CAA93399| (Z69382) N1962 [Saccharomyces
cerevisiae] >gi|1302028|emb|CAA95988| (Z71385) ORF
YNL108c [Saccharomyces cerevisiae]
Length = 270
Score = 38.7 bits (88), Expect = 0.025
Identities = 17/48 (35%), Positives = 28/48 (57%)
Query: 14 PEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAK 61
P +D PL+E G + ++A + VKPE+I++SP R +T+K
Sbjct: 27 PTGIDNDVPLSEHGVEQAHELANYISKLDVKPEMIFSSPFYRCLETSK 74
gi|4151123 (U73808) 2,3-PDG dependent phosphoglycerate mutase [Amycolatopsis
methanolica]
Length = 205
Score = 38.3 bits (87), Expect = 0.033
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 4 VFLVRHGEA---YPEEVD---PQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAK 57
++LVRHG+ +++D P PLTE G + ++A+ L V E +Y S RA+
Sbjct: 3 LYLVRHGQTASNVAKKLDTALPGPPLTELGHEQARQLAEKLATEPV--EAVYASHATRAQ 60
Query: 58 QTAKIIANILGV 69
QTA +A LG+
Sbjct: 61 QTAAPLAQALGM 72
emb|CAB03118.1| (Z81086) predicted using Genefinder [Caenorhabditis elegans]
Length = 287
Score = 38.3 bits (87), Expect = 0.033
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 22 PLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKIIANILGV 69
PLTE+G+ +E + L N G++P ++ SP +++ QTA + LG+
Sbjct: 78 PLTERGQIVSETYGRGLLNAGIRPFEVFCSPDMKSVQTAAFLIKGLGL 125
sp|P36942|PMG2_ECOLI PROBABLE PHOSPHOGLYCERATE MUTASE 2 (PHOSPHOGLYCEROMUTASE 2) (PGAM
2) (BPG-DEPENDENT PGAM 2)
Length = 215
Score = 38.3 bits (87), Expect = 0.033
Identities = 27/82 (32%), Positives = 40/82 (47%), Gaps = 7/82 (8%)
Query: 1 MFWVFLVRHGEAYPE-----EVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLR 55
M V+LVRHGE + PLT KG + ++A K G+ I +S R
Sbjct: 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAKELGITH--IISSDLGR 58
Query: 56 AKQTAKIIANILGVEKIRETEL 77
++TA+IIA G + I ++ L
Sbjct: 59 TRRTAEIIAQACGCDIIFDSRL 80
pir||S56619 hypothetical protein o215b - Escherichia coli >gi|537235 (U14003)
Kenn Rudd identifies as gpmB [Escherichia coli]
>gi|1790856 (AE000509) phosphoglyceromutase 2
[Escherichia coli]
Length = 215
Score = 38.3 bits (87), Expect = 0.033
Identities = 27/82 (32%), Positives = 40/82 (47%), Gaps = 7/82 (8%)
Query: 1 MFWVFLVRHGEAYPE-----EVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLR 55
M V+LVRHGE + PLT KG + ++A K G+ I +S R
Sbjct: 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAKELGITH--IISSDLGR 58
Query: 56 AKQTAKIIANILGVEKIRETEL 77
++TA+IIA G + I ++ L
Sbjct: 59 TRRTAEIIAQACGCDIIFDSRL 80
emb|CAB16450| (Z99263) hypothetical protein MLCB637.35c [Mycobacterium leprae]
Length = 312
Score = 37.5 bits (85), Expect = 0.056
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 4 VFLVRHGEAYPE----EVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQT 59
V +VRHG A + E D +RPL ++GR E + L FG +Y + +L QT
Sbjct: 151 VLIVRHGTAGRKSRLSEDDTKRPLDKQGRAQAEALIGQLLAFGATD--VYAADQLHCHQT 208
Query: 60 AKIIANILGVEKIRETEL 77
+ +A LGV E L
Sbjct: 209 VEPLAAELGVPIHNEPSL 226
emb|CAA18344| (AL022268) hypothetical protein SC4H2.29 [Streptomyces
coelicolor]
Length = 219
Score = 36.7 bits (83), Expect = 0.096
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 4 VFLVRHGEA--------YPEEVDPQRPLTEKGRKDTEKIAKALKN-FGVKPELIYTSPKL 54
+ LVRHGE+ Y E D LT++GR E+ + L+ FG + +Y SP
Sbjct: 7 IVLVRHGESIGNVDDTVYEREPDHALALTDRGRAQAEETGEGLREVFGSERISVYVSPYR 66
Query: 55 RAKQTAKIIANILGVEKIRE 74
R +T + + +IRE
Sbjct: 67 RTHETLRAFRLDPDLIRIRE 86
sp|P33158|PMGY_STRCO PHOSPHOGLYCERATE MUTASE (PHOSPHOGLYCEROMUTASE) (PGAM)
(BPG-DEPENDENT PGAM) >gi|418809|pir||S30886
phosphoglycerate mutase (EC 5.4.2.1) - Streptomyces
coelicolor >gi|153400 (M83661) phosphoglycerate mutase
[Streptomyces coelicolor]
Length = 253
Score = 36.7 bits (83), Expect = 0.096
Identities = 23/66 (34%), Positives = 39/66 (58%), Gaps = 9/66 (13%)
Query: 4 VFLVRHGEAYPEE-------VDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRA 56
+ L+RHGE+ E VD LT KG K+ + + LK+ G+ P++++TS + RA
Sbjct: 8 LILLRHGESEWNEKNLFTGWVDVN--LTPKGEKEATRGGELLKDAGLLPDVVHTSVQKRA 65
Query: 57 KQTAKI 62
+TA++
Sbjct: 66 IRTAQL 71
pdb|1QHF|A Chain A, Yeast Phosphoglycerate Mutase-3pg Complex Structure To
1.7 A >gi|5542363|pdb|1QHF|B Chain B, Yeast
Phosphoglycerate Mutase-3pg Complex Structure To 1.7 A
Length = 240
Score = 35.2 bits (79), Expect = 0.28
Identities = 24/64 (37%), Positives = 36/64 (55%), Gaps = 9/64 (14%)
Query: 6 LVRHGEAYPEE-------VDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
LVRHG++ E VD + L+ KG+++ + + LK V P+++YTS RA Q
Sbjct: 5 LVRHGQSEWNEKNLFTGWVDVK--LSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQ 62
Query: 59 TAKI 62
TA I
Sbjct: 63 TANI 66
gi|2984053 (AE000754) phosphoglycerate mutase [Aquifex aeolicus]
Length = 220
Score = 35.2 bits (79), Expect = 0.28
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 4 VFLVRHGEA-YPEEVDPQ----RPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
++L+RH ++ Y E+ Q LT G + + K + KPE+I TSP+ RA +
Sbjct: 21 IYLIRHAQSEYNEKGIFQGRLDSDLTPLGFVQSRLLVKQFER--EKPEVIITSPQRRAYK 78
Query: 59 TAKIIANILGV-----EKIRE 74
TA ++++LG+ E+IRE
Sbjct: 79 TALTLSDVLGIDLIVDERIRE 99
emb|CAB05428| (Z83018) mutT1 [Mycobacterium tuberculosis]
Length = 317
Score = 35.2 bits (79), Expect = 0.28
Identities = 23/70 (32%), Positives = 36/70 (50%), Gaps = 6/70 (8%)
Query: 4 VFLVRHG----EAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQT 59
V +VRHG +A+ D +RPL ++GR E + L FG +Y + ++R QT
Sbjct: 156 VLVVRHGTAGSKAHFSGDDSKRPLDKRGRAQAEALVPQLLAFGATD--VYAADRVRCHQT 213
Query: 60 AKIIANILGV 69
+ +A L V
Sbjct: 214 MEPLAAELNV 223
pdb|4PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
>gi|2624631|pdb|4PGM|B Chain B, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|2624632|pdb|4PGM|C Chain C, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|2624633|pdb|4PGM|D Chain D, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|3660055|pdb|1BQ3|D Chain D, Saccharomyces
Cerevisiae Phosphoglycerate Mutase In Complex With
Inositol Hexakisphosphate >gi|3660056|pdb|1BQ3|C Chain
C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
>gi|3660057|pdb|1BQ3|A Chain A, Saccharomyces
Cerevisiae Phosphoglycerate Mutase In Complex With
Inositol Hexakisphosphate >gi|3660058|pdb|1BQ3|B Chain
B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
>gi|3660059|pdb|1BQ4|D Chain D, Saccharomyces
Cerevisiae Phosphoglycerate Mutase In Complex With
Benzene Hexacarboxylate >gi|3660060|pdb|1BQ4|C Chain C,
Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
>gi|3660061|pdb|1BQ4|A Chain A, Saccharomyces
Cerevisiae Phosphoglycerate Mutase In Complex With
Benzene Hexacarboxylate >gi|3660062|pdb|1BQ4|B Chain B,
Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
>gi|4558238|pdb|5PGM|D Chain D, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|4558239|pdb|5PGM|C Chain C, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|4558240|pdb|5PGM|A Chain A, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|4558241|pdb|5PGM|B Chain B, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|4558242|pdb|5PGM|E Chain E, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|4558243|pdb|5PGM|F Chain F, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|4558244|pdb|5PGM|G Chain G, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|4558245|pdb|5PGM|H Chain H, Saccharomyces
Cerevisiae Phosphoglycerate Mutase
>gi|1326042|emb|CAA29698| (X06408) GPM (AA 1-246)
[Saccharomyces cerevisiae]
Length = 246
Score = 35.2 bits (79), Expect = 0.28
Identities = 24/64 (37%), Positives = 36/64 (55%), Gaps = 9/64 (14%)
Query: 6 LVRHGEAYPEE-------VDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
LVRHG++ E VD + L+ KG+++ + + LK V P+++YTS RA Q
Sbjct: 5 LVRHGQSEWNEKNLFTGWVDVK--LSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQ 62
Query: 59 TAKI 62
TA I
Sbjct: 63 TANI 66
ref|NP_012770.1|GPM1| Phosphoglycerate mutase; Gpm1p >gi|548534|sp|P00950|PMG1_YEAST
PHOSPHOGLYCERATE MUTASE 1 (PHOSPHOGLYCEROMUTASE 1)
(PGAM 1) (MPGM 1) (BPG-DEPENDENT PGAM 1)
>gi|68472|pir||PMBYY phosphoglycerate mutase (EC
5.4.2.1) - yeast (Saccharomyces cerevisiae)
>gi|3749|emb|CAA41595| (X58789) phosphoglycerate mutase
[Saccharomyces cerevisiae] >gi|407495|emb|CAA81501|
(Z26877) unknown [Saccharomyces cerevisiae]
>gi|486265|emb|CAA81994| (Z28152) ORF YKL152c
[Saccharomyces cerevisiae] >gi|228355|prf||1803223A
phosphoglycerate mutase [Saccharomyces cerevisiae]
>gi|1582552|prf||2118404N ORF [Saccharomyces
cerevisiae]
Length = 247
Score = 35.2 bits (79), Expect = 0.28
Identities = 24/64 (37%), Positives = 36/64 (55%), Gaps = 9/64 (14%)
Query: 6 LVRHGEAYPEE-------VDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
LVRHG++ E VD + L+ KG+++ + + LK V P+++YTS RA Q
Sbjct: 6 LVRHGQSEWNEKNLFTGWVDVK--LSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQ 63
Query: 59 TAKI 62
TA I
Sbjct: 64 TANI 67
emb|CAA22497.1| (AL034491) putative phosphoglycerate mutase family member
[Schizosaccharomyces pombe]
Length = 282
Score = 34.8 bits (78), Expect = 0.37
Identities = 23/73 (31%), Positives = 38/73 (51%), Gaps = 12/73 (16%)
Query: 2 FWVFLVRHGEAYPE--------EVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPK 53
F LVRH E+ +D + LT G +K+AK+++N + +Y+SP+
Sbjct: 54 FTCLLVRHAESEHNVRGIRAGARIDSE--LTVHGYNQAKKLAKSIRNLDIV--CVYSSPQ 109
Query: 54 LRAKQTAKIIANI 66
RAK+TA+ I +
Sbjct: 110 KRAKRTAEEITKV 122
ref|NP_014753.1|YOR110W| RNA polymerase III transcription initiation factor TFIIIC;
Yor110wp >gi|2132058|pir||S61668 hypothetical protein
YOR110w - yeast (Saccharomyces cerevisiae)
>gi|1164955|emb|CAA64030| (X94335) YOR3234w
[Saccharomyces cerevisiae] >gi|1420297|emb|CAA99308|
(Z75018) ORF YOR110w [Saccharomyces cerevisiae]
Length = 435
Score = 34.8 bits (78), Expect = 0.37
Identities = 21/77 (27%), Positives = 37/77 (47%), Gaps = 11/77 (14%)
Query: 4 VFLVRHGEA--------YPEE---VDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSP 52
+++ RHG YP+ +D PL E G + +++A L + +PE + SP
Sbjct: 6 IYIARHGYRSNWLPEGPYPDPLTGIDSDVPLAEHGVQQAKELAHYLLSLDNQPEAAFASP 65
Query: 53 KLRAKQTAKIIANILGV 69
R +T + IA +L +
Sbjct: 66 FYRCLETVQPIAKLLEI 82
gb|AAF17689.1|AC009243_16 (AC009243) F28K19.26 [Arabidopsis thaliana]
Length = 677
Score = 34.0 bits (76), Expect = 0.63
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 4 VFLVRHGEAYPEEVD-----PQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
+ L+RHGE+ E + PLT+KG + + K + N V +LI+TS +RA+
Sbjct: 426 LILIRHGESLWNEKNLFTGCVDVPLTQKGVGEAIEAGKKISNIPV--DLIFTSSLIRAQM 483
Query: 59 TAKI 62
TA +
Sbjct: 484 TAML 487
emb|CAB61320.1| (AL132997) putative phosphatase [Streptomyces coelicolor A3(2)]
Length = 199
Score = 33.6 bits (75), Expect = 0.83
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 4 VFLVRHGEAYPEEVDPQR-----PLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
+FLVRHGE PLTEKGR+ + +++ + + SP RA++
Sbjct: 4 LFLVRHGETEWSRSGRHTGLTDVPLTEKGREQARSLVPLIRSHRI--GAAFVSPFQRARE 61
Query: 59 TAKII 63
TA++I
Sbjct: 62 TAELI 66
gb|AAF12185.1|AE001862_11 (AE001862) phosphoglycerate mutase-related protein [Deinococcus
radiodurans]
Length = 237
Score = 32.8 bits (73), Expect = 1.4
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 4 VFLVRHGEAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKI 62
+ LVRHG+A P E R L+ G + + AL GV+P + +R ++TA++
Sbjct: 4 LILVRHGQATPFEKATDR-LSALGEQQARAVGAALTAQGVRPTHVLHGSLVRQRRTAEL 61
sp|Q46267|PFLA_CLOPA PYRUVATE FORMATE-LYASE ACTIVATING ENZYME (PFL-ACTIVATING ENZYME)
>gi|2127348|pir||JC6011 iron-dependent pyruvate
formate-lyase-activating enzyme - Clostridium
pasteurianum >gi|1072362|emb|CAA63749| (X93463)
pyruvate-formate-lyase-activating enzyme [Clostridium
pasteurianum]
Length = 238
Score = 32.8 bits (73), Expect = 1.4
Identities = 20/61 (32%), Positives = 32/61 (51%), Gaps = 6/61 (9%)
Query: 18 DPQRPLTEKGRKDTEKIAKALKNFGVKPELIY------TSPKLRAKQTAKIIANILGVEK 71
D + +T KG++ + KA++N GVK + + T K ++ A II NI VEK
Sbjct: 133 DGYKCITGKGKRGFDDFLKAVENIGVKVWIRHVIVPTLTDSKENIRKLANIIKNIRNVEK 192
Query: 72 I 72
+
Sbjct: 193 V 193
ref|NP_014267.1|YNL132W| Ynl132wp >gi|1730777|sp|P53914|YNN2_YEAST HYPOTHETICAL 119.3 KD
PROTEIN IN FPR1-TOM22 INTERGENIC REGION
>gi|1078050|pir||S55151 probable membrane protein
YNL132w - yeast (Saccharomyces cerevisiae)
>gi|854505|emb|CAA86893| (Z46843) orf16 [Saccharomyces
cerevisiae] >gi|1302072|emb|CAA96014| (Z71408) ORF
YNL132w [Saccharomyces cerevisiae]
Length = 1056
Score = 32.8 bits (73), Expect = 1.4
Identities = 23/93 (24%), Positives = 48/93 (50%), Gaps = 2/93 (2%)
Query: 57 KQTAKIIANILGVEKIRETELLLPNTDPKETSKLIDGKNVVLCGHLPNLARLFSLLYLSE 116
K++ KI+ N G+ +++ E L PN + T + ++G +V+ L +++ L L ++
Sbjct: 109 KESEKILGNTYGMCILQDFEALTPNLLAR-TIETVEGGGIVVI-LLKSMSSLKQLYTMTM 166
Query: 117 DNERRVNLSTSGALVLKWKDFWVLELLLEPSVL 149
D R G +V ++ + ++L L P+ L
Sbjct: 167 DVHARYRTEAHGDVVARFNERFILSLGSNPNCL 199
gi|4210989 (AF121781) unknown [Homo sapiens]
Length = 670
Score = 32.5 bits (72), Expect = 1.9
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 1/69 (1%)
Query: 22 PLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAK-IIANILGVEKIRETELLLP 80
PLT KG+K T I K+ + E+ + KL ++ +K ++ G EK E ++LL
Sbjct: 384 PLTTKGKKATGNIDHKEKSTEINHEIPHCVNKLPKQEDSKRKYEDLSGEEKHLEVQILLE 443
Query: 81 NTDPKETSK 89
NT ++ K
Sbjct: 444 NTGRQKDKK 452
emb|CAA74541.1| (Y14084) hypothetical protein [Bacillus subtilis]
>gi|2633370|emb|CAB12874| (Z99109) similar to
phosphoglycerate mutase (glycolysis) [Bacillus
subtilis]
Length = 193
Score = 32.5 bits (72), Expect = 1.9
Identities = 24/69 (34%), Positives = 34/69 (48%), Gaps = 7/69 (10%)
Query: 4 VFLVRHGEA-----YPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
V LVRHGE + PL G + + + +K+F ++I TSP RAK+
Sbjct: 4 VCLVRHGETDWNLQQKCQGKTDIPLNATGERQARETGEYVKDFSW--DIIVTSPLKRAKR 61
Query: 59 TAKIIANIL 67
TA+II L
Sbjct: 62 TAEIINEYL 70
pir||S09020 Calcimedin, 32K - chicken (fragments)
Length = 157
Score = 32.5 bits (72), Expect = 1.9
Identities = 35/121 (28%), Positives = 50/121 (40%), Gaps = 11/121 (9%)
Query: 28 RKDTEKIAKALKNFGVKPE--LIYTSPKLRAKQTAKIIANILG---VEKIRETELLLPNT 82
R D E + KA+K G E LI TS +Q + G V+ + TE+L T
Sbjct: 15 RADAEALRKAMKGMGTDEEEILILTSRNNAQRQEIASAFTLFGRDLVDDLVLTEILASRT 74
Query: 83 DPKETSKLIDGKNVVLCGHLPNLARLFSLLYLSEDNERRVNLSTSGALVLKWKDFWVLEL 142
P E +I G+ GH L L LL + D + L +G L + F + E
Sbjct: 75 -PAEVQNIITGET---SGHFERL--LVVLLQANNDPDDAQVLFRAGELYMTISGFQIEET 128
Query: 143 L 143
+
Sbjct: 129 I 129
dbj|BAA16651| (D90899) phosphoglycerate mutase [Synechocystis sp.]
Length = 349
Score = 32.1 bits (71), Expect = 2.4
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 4 VFLVRHGEAYPEEVDPQR-----PLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
+ L+RHGE + PL + GR +K A+ LK+ V L +SP R K+
Sbjct: 133 LLLIRHGETQWNREGRFQGIRDIPLNDNGRHQAQKAAEFLKD--VPINLGISSPMARPKE 190
Query: 59 TAKII 63
TA+II
Sbjct: 191 TAEII 195
sp|P14688|GRSB_BACBR GRAMICIDIN S SYNTHETASE II [INCLUDES: ATP-DEPENDENT PROLINE ADENYLASE
(PROA) (PROLINE ACTIVASE); ATP-DEPENDENT VALINE ADENYLASE
(VALA) (VALINE ACTIVASE); ATP-DEPENDENT ORNITHINE
ADENYLASE (ORNA) (ORNITHINE ACTIVASE); ATP-...
>gi|68684|pir||YGBSG2 gramicidin S synthetase (EC
6.-.-.-) component II - Bacillus brevis
>gi|39372|emb|CAA43838| (X61658) grsB [Brevibacillus
brevis]
Length = 4452
Score = 32.1 bits (71), Expect = 2.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 20 QRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKIIANILGVEKI 72
Q PLT+ G+ + + K FG E + S + K A+I N+LGV KI
Sbjct: 1978 QMPLTQNGKVNRSALPKPDGEFGTATEYVAPSSDIEMK-LAEIWHNVLGVNKI 2029
pir||JX0340 gramicidin S synthase 2 - Bacillus brevis >gi|511490|dbj|BAA06146|
(D29676) gramicidin S synthetase 2 [Brevibacillus brevis]
Length = 4450
Score = 32.1 bits (71), Expect = 2.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 20 QRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKIIANILGVEKI 72
Q PLT+ G+ + + K FG E + S + K A+I N+LGV KI
Sbjct: 1977 QMPLTQNGKVNRSALPKPDGEFGTATEYVAPSSDIEMK-LAEIWHNVLGVNKI 2028
emb|CAB60484.1| (AL132858) Y113G7A.14 [Caenorhabditis elegans]
Length = 204
Score = 31.7 bits (70), Expect = 3.2
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 26 KGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKIIANILGVEKIRETELLLPNTDPK 85
K + TE + + + F V P L+Y + A I +++ K +T ++ TDP
Sbjct: 46 KNKNGTESV-RLFEYFNVNPFLVYAICGIAAVIVIIAIISLILWLKNHKTRVINETTDPV 104
Query: 86 ETSKLIDGKNVVLC 99
TS DGK + C
Sbjct: 105 LTSSYQDGKGCLSC 118
pdb|3PGM| Phosphoglycerate Mutase (E.C.2.7.5.3) De-Phospho Enzyme
>gi|223471|prf||0807298A mutase,phosphoglycerate
[Saccharomyces cerevisiae]
>gi|1450068|prf||0807298A:PDB=3PGM
mutase,phosphoglycerate [Saccharomyces cerevisiae]
Length = 241
Score = 31.7 bits (70), Expect = 3.2
Identities = 24/64 (37%), Positives = 34/64 (52%), Gaps = 9/64 (14%)
Query: 6 LVRHGEAYPEE-------VDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQ 58
LVRHG++ E VD + L+ KG+++ + + LK GV + YTS RA Q
Sbjct: 5 LVRHGQSEWNEKNLFTGWVDVK--LSAKGQQEAARAGELLKEKGVNVLVDYTSKLSRAIQ 62
Query: 59 TAKI 62
TA I
Sbjct: 63 TANI 66
gb|AAD26531.1|AF087141_1 (AF087141) valyl-tRNA synthetase [Mus musculus]
>gi|4590330|gb|AAD26532.1|AF087680_1 (AF087680)
valyl-tRNA synthetase [Mus musculus]
Length = 1263
Score = 31.3 bits (69), Expect = 4.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 5 FLVRHGEAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELI 48
F+ H A P DP GR + E KA + FGV P+ I
Sbjct: 734 FITVHDPAVPPGEDPDGRYWVSGRTEAEAREKAAREFGVSPDKI 777
gi|3986754 (AF109905) G7A [Mus musculus]
Length = 1263
Score = 31.3 bits (69), Expect = 4.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 5 FLVRHGEAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELI 48
F+ H A P DP GR + E KA + FGV P+ I
Sbjct: 734 FITVHDPAVPPGEDPDGRYWVSGRTEAEAREKAAREFGVSPDKI 777
gb|AAC35225.1| (AC005496) hypothetical protein [Arabidopsis thaliana]
Length = 738
Score = 31.3 bits (69), Expect = 4.2
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 18 DPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKIIANILGVEKIRETEL 77
D P++EK ++ + LK+ G +PE+ + ++ + N L EK+
Sbjct: 621 DNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLN-LHSEKLAICYG 679
Query: 78 LLPNTDPKETSKLIDGKNVVLCGHLPNLARLFSLLY 113
L+ PK + KN+ +CG ++A+L S LY
Sbjct: 680 LISTEAPKVIRVI---KNLRVCGDCHSVAKLISQLY 712
gi|2688689 (AE001175) ABC transporter, ATP-binding protein [Borrelia
burgdorferi]
Length = 309
Score = 31.3 bits (69), Expect = 4.2
Identities = 26/93 (27%), Positives = 43/93 (45%), Gaps = 8/93 (8%)
Query: 27 GRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTAKIIANILGVEKIRE------TELLLP 80
G+ E + L+ G PE + P+L K+ K I+ I GV+K+++ + L
Sbjct: 62 GKDIVEHSKEILQQIGYVPEKLALYPELSVKEYLKFISEIKGVKKLKKEIDRVISIFKLK 121
Query: 81 NTDPKETSKLIDG--KNVVLCGHLPNLARLFSL 111
+ K S+L G + V + G L N +L L
Sbjct: 122 EVEDKLISQLSKGFRQRVGIAGALINNPKLVIL 154
sp|Q21122|F26_CAEEL PUTATIVE 6PF-2-K/FRU-2,6-P2ASE [INCLUDES: 6-PHOSPHOFRUCTO-2-KINASE
; FRUCTOSE-2,6-BISPHOSPHATASE ]
>gi|1118103|gb|AAA83312.1| (U41558) Contains similarity
to Pfam domain: PF00300 (PGAM), Score=196.5,
E-value=1.4e-55, N=1 [Caenorhabditis elegans]
Length = 450
Score = 31.3 bits (69), Expect = 4.2
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 4 VFLVRHGEAYPE---EVDPQRPLTEKGRKDTEKIAKALKNFGVKPELIYTSPKLRAKQTA 60
++L RHG++ + PLTE G+K +A + V ++ S K+RA QTA
Sbjct: 241 IYLTRHGQSEYNAMGRLGGDSPLTEDGQKYASALADFFEEEEVPGLRVWCSQKVRAAQTA 300
Query: 61 K 61
+
Sbjct: 301 Q 301
sp|Q04462|SYV_RAT VALYL-TRNA SYNTHETASE (VALINE--TRNA LIGASE) (VALRS)
>gi|484949|pir||PN0473 valine--tRNA ligase (EC 6.1.1.9)
- rat (fragment) >gi|207625 (M98327) transfer RNA-Val
synthetase [Rattus norvegicus]
Length = 594
Score = 31.3 bits (69), Expect = 4.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 5 FLVRHGEAYPEEVDPQRPLTEKGRKDTEKIAKALKNFGVKPELI 48
F+ H A P DP GR + E KA + FGV P+ I
Sbjct: 238 FITVHDPAVPPGEDPDGRYWVSGRTEAEAREKAAREFGVSPDKI 281
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.318 0.138 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41220131
Number of Sequences: 444417
Number of extensions: 1561808
Number of successful extensions: 4313
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 4277
Number of HSP's gapped (non-prelim): 67
length of query: 149
length of database: 136,724,657
effective HSP length: 52
effective length of query: 97
effective length of database: 113,614,973
effective search space: 11020652381
effective search space used: 11020652381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 66 (30.1 bits)
