Score E
Sequences producing significant alignments: (bits) Value
gi|2983631 (AE000727) ferredoxin oxidoreductase gamma subun... 414 e-115
gi|2983646 (AE000728) ferredoxin oxidoreductase gamma subun... 241 4e-63
sp|O58411|PORC_PYRHO PYRUVATE/KETOISOVALERATE OXIDOREDUCTAS... 103 1e-21
emb|CAB50273.1| (AJ248287) keto-valine-ferredoxin oxidoredu... 100 1e-20
sp|Q57717|PORC_METJA PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVA... 100 2e-20
gi|2648855 (AE000986) pyruvate ferredoxin oxidoreductase, s... 99 2e-20
sp|Q51799|PORC_PYRFU PYRUVATE/KETOISOVALERATE OXIDOREDUCTAS... 99 3e-20
sp|O27772|PORC_METTH PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVA... 97 1e-19
gi|2622871 (AE000929) pyruvate oxidoreductase, gamma subuni... 97 1e-19
dbj|BAA30772| (AP000006) 185aa long hypothetical ferredoxin... 84 8e-16
emb|CAB49431.1| (AJ248284) 2-ketoglutarate ferredoxin oxido... 82 5e-15
sp|Q57956|KORC_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (... 73 2e-12
sp|O05650|PORC_THEMA PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVA... 71 8e-12
sp|O27114|KORC_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (... 70 2e-11
emb|CAA59455| (X85171) gamma subunit of pyruvate ferredoxin... 70 2e-11
gb|AAD35491.1|AE001720_5 (AE001720) keto/oxoacid ferredoxin... 65 5e-10
dbj|BAA30775| (AP000006) 170aa long hypothetical ferredoxin... 65 5e-10
emb|CAB49428.1| (AJ248284) 2-ketoglutarate ferredoxin oxido... 62 5e-09
sp|O58496|IORB_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT ... 61 9e-09
sp|O28249|IORB_ARCFU INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT ... 61 9e-09
emb|CAB50203.1| (AJ248287) indolepyruvate ferredoxin oxidor... 57 1e-07
gi|2648475 (AE000961) 2-ketoisovalerate ferredoxin oxidored... 55 7e-07
sp|O07836|IORB_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT ... 52 4e-06
gi|2935170 (AF021092) PorC subunit of pyruvate:flavodoxin o... 50 1e-05
gi|2460020 (AF013980) pyruvate:ferredoxin oxidoreductase ga... 50 2e-05
gb|AAD07656.1| (AE000572) ferredoxin oxidoreductase, gamma ... 50 2e-05
gi|4155077 (AE001486) SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCT... 49 3e-05
gb|AAD08152.1| (AE000617) pyruvate ferredoxin oxidoreductas... 47 1e-04
gi|2935181 (AF021094) OorC subunit of 2-oxoglutarate:accept... 47 1e-04
emb|CAB49133.1| (AJ248283) indolepyruvate ferredoxin oxidor... 45 6e-04
sp|O29779|KORC_ARCFU 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (... 43 0.002
dbj|BAA29301.1| (AP000001) 196aa long hypothetical indolepy... 43 0.003
gi|622958 (U16822) pyruvate:ferredoxin oxidoreductas propro... 43 0.003
gi|622960 (U16823) pyruvate:ferredoxin oxidoreductase propr... 42 0.004
sp|P52647|NIFJ_ECOLI PROBABLE PYRUVATE-FLAVODOXIN OXIDOREDU... 41 0.009
sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT ... 39 0.033
sp|O26801|VORA_METTH KETOISOVALERATE OXIDOREDUCTASE SUBUNIT... 39 0.033
gi|960283 (L27221) pyruvate:ferredoxin oxidoreductase [Giar... 39 0.043
pir||B53708 indolepyruvate synthase (EC 1.2.7.-) beta subun... 39 0.043
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxi... 37 0.13
emb|CAA70873| (Y09702) pyruvate-ferredoxin oxidoreductase [... 37 0.13
gb|AAF14584.1|AF191494_1 (AF191494) nucleotide excision rep... 35 0.49
gb|AAF01274.1|AF160500_1 (AF160500) repair endonuclease [Ar... 35 0.49
dbj|BAA80471.1| (AP000061) 616aa long hypothetical 2-oxoaci... 35 0.65
emb|CAA12243| (AJ224959) putative ferredoxin-oxidoreductase... 35 0.65
sp|P52965|NIFJ_SYNY3 PUTATIVE PYRUVATE-FLAVODOXIN OXIDOREDU... 33 1.9
pir||JC4919 2-oxoacid ferredoxin oxidoreductase (EC 1.-.-.-... 32 4.3
sp|P80911|IORB_METTM INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT ... 31 7.3
sp|Q58296|Y886_METJA PUTATIVE MOLYBDOPTERIN BIOSYNTHESIS PR... 31 7.3
gi|3377591 (AF075050) similar to (AJ223828) small glutamine... 31 9.6
sp|Q58601|HIS1_METJA ATP PHOSPHORIBOSYLTRANSFERASE >gi|2127... 31 9.6
gi|2983631 (AE000727) ferredoxin oxidoreductase gamma subunit [Aquifex
aeolicus]
Length = 230
Score = 414 bits (1053), Expect = e-115
Identities = 213/230 (92%), Positives = 213/230 (92%)
Query: 1 MKRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPI 60
MKRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPI
Sbjct: 1 MKRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPI 60
Query: 61 YEVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEEL 120
YEVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEEL
Sbjct: 61 YEVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEEL 120
Query: 121 NAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGTFVASG 180
NAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGTFVASG
Sbjct: 121 NAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGTFVASG 180
Query: 181 GTTALDSAIEXXXXXXQELLAKNMEVIKYTMKMAXXXXXXXXXXXQVKAQ 230
GTTALDSAIE QELLAKNMEVIKYTMKMA QVKAQ
Sbjct: 181 GTTALDSAIEKKFKKKQELLAKNMEVIKYTMKMAEENGWVEEEEEQVKAQ 230
gi|2983646 (AE000728) ferredoxin oxidoreductase gamma subunit [Aquifex
aeolicus]
Length = 241
Score = 241 bits (609), Expect = 4e-63
Identities = 121/213 (56%), Positives = 157/213 (72%), Gaps = 1/213 (0%)
Query: 2 KRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIY 61
+R N+R+ +GGQG V++AHI+ A AG YA PF+G+EKRMAP E+YVR +PIY
Sbjct: 7 RRINVRMPAIGGQGAVSAAHIMATAADHAGYYAVSNPFYGAEKRMAPSESYVRIGIEPIY 66
Query: 62 EVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN 121
+ GEVVYP+VIM++H QVIT GKSYTMPFYSG+K+NG+IIIN++ D++ DEDK LEE N
Sbjct: 67 DRGEVVYPDVIMVFHSQVITMGKSYTMPFYSGIKKNGLIIINAEEDLLSDEDKAFLEERN 126
Query: 122 AKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGTFVASGG 181
KI+ AT+ A +IAGTELATNMAM+G FFGIT++V +E IE+ + RFL FVASGG
Sbjct: 127 VKIFNFSATKFAVEIAGTELATNMAMIGAFFGITQIVGMESIEEGIKARFL-KKFVASGG 185
Query: 182 TTALDSAIEXXXXXXQELLAKNMEVIKYTMKMA 214
T +LDSAIE EL+ KN+ + + A
Sbjct: 186 TASLDSAIERKFKKKLELIEKNIATARAAYEFA 218
sp|O58411|PORC_PYRHO PYRUVATE/KETOISOVALERATE OXIDOREDUCTASES COMMON GAMMA SUBUNIT
[INCLUDES: PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVATE
OXIDOREDUCTASE GAMMA CHAIN) (POR) (PYRUVIC-FERREDOXIN
OXIDOREDUCTASE GAMMA SUBUNIT); KETOISOVALERATE OXIDO...
>gi|3257086|dbj|BAA29769| (AP000003) 185aa long
hypothetical ferredoxin oxidoreductase gamma subunit
[Pyrococcus horikoshii]
Length = 185
Score = 103 bits (255), Expect = 1e-21
Identities = 61/168 (36%), Positives = 96/168 (56%), Gaps = 8/168 (4%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
IR G GGQG VT+A+I+ A GKY PFFG E+R APV A+ R ++PI +
Sbjct: 4 IRFHGRGGQGAVTAANILAEAAFLEGKYVQAFPFFGVERRGAPVTAFTRIDEKPIRIKTQ 63
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
+ P+++++ P ++ T+ +GLKE G++IIN++ DE + L++ K+
Sbjct: 64 IYEPDIVVVLDPSLLE-----TVDVTAGLKEEGIVIINTEKS--KDEILEKLKKKPKKLA 116
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLG 173
+ AT IA + G + TN A++G T LV +E +EKA+ + F G
Sbjct: 117 LVDATTIALETLGLPI-TNTAILGAVAKATGLVNIESVEKAIKDTFSG 163
emb|CAB50273.1| (AJ248287) keto-valine-ferredoxin oxidoreductase gamma chain
[Pyrococcus abyssi]
Length = 185
Score = 100 bits (246), Expect = 1e-20
Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 14/171 (8%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
IR G GGQG VT+A+I+ A GKY PFFG E+R APV A+ R ++PI +
Sbjct: 4 IRFHGRGGQGAVTAANILAEAAFIEGKYVQAFPFFGVERRGAPVTAFTRIDEKPIRIKTQ 63
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN---A 122
+ P+V+++ P ++ T+ +GLKE+G++I+N++ +++LE+L
Sbjct: 64 IYEPDVVVVLDPSLLE-----TVDVTAGLKEDGIVIVNTE-----KSKEEVLEKLKRKPK 113
Query: 123 KIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLG 173
K+ + AT IA + G + TN A++G T LV +E +E A+ + F G
Sbjct: 114 KLALVDATTIALETLGLPI-TNTAILGAVAKATGLVKIESVETAIKDTFSG 163
sp|Q57717|PORC_METJA PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVATE OXIDOREDUCTASE GAMMA
CHAIN) (POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE GAMMA
SUBUNIT) >gi|2127895|pir||F64333 ferredoxin
oxidoreductase, gamma subunit - Methanococcus jannaschii
>gi|1590996 (U67482) pyruvate ferredoxin oxidoreductase,
subunit gamma (porG) [Methanococcus jannaschii]
Length = 178
Score = 99.8 bits (245), Expect = 2e-20
Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
IR G GGQG VT+A I+ A GK+ PFFG E+R APV A+ R D+ I +
Sbjct: 4 IRFHGRGGQGAVTAAQILAKAAFYDGKFCQAFPFFGVERRGAPVMAFTRIDDKKITLRCQ 63
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
+ P+ +++ ++ ++ GLK++G ++IN+ D + +L K Y
Sbjct: 64 IYEPDYVIVQDATLLE-----SVNVVEGLKKDGAVVINTVKDDL---------DLGYKTY 109
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLG 173
I AT IA D+ G + N AMVG F G+T +V++E ++KA+++ F G
Sbjct: 110 TIDATGIALDVLGVPI-VNTAMVGAFAGVTGIVSIESVKKAILDTFKG 156
gi|2648855 (AE000986) pyruvate ferredoxin oxidoreductase, subunit gamma (porG)
[Archaeoglobus fulgidus]
Length = 191
Score = 99.5 bits (244), Expect = 2e-20
Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
+R G GGQG VT+A ++ A G Y P FG+EKR PV +++R SD+PI E
Sbjct: 8 VRFHGRGGQGAVTAADLLAVAGFKEGYYTLSFPMFGAEKRGTPVVSFLRISDEPIVARDE 67
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
V P+ +++ P V+ T+ +GLK+ GM+I N + + +EL K+
Sbjct: 68 VYNPDYVVVLDPTVME-----TVNVVAGLKKGGMLIANYPKSSEDLKKEVKADELGIKVA 122
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLG 173
I AT++A ++ G + TN MVG F G TRL+ LE + + + E F G
Sbjct: 123 TINATKMAMEVLGRPI-TNTTMVGAFGGATRLIALETLLEVVREWFKG 169
sp|Q51799|PORC_PYRFU PYRUVATE/KETOISOVALERATE OXIDOREDUCTASES COMMON GAMMA SUBUNIT
[INCLUDES: PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVATE
OXIDOREDUCTASE GAMMA CHAIN) (POR) (PYRUVIC-FERREDOXIN
OXIDOREDUCTASE GAMMA SUBUNIT); KETOISOVALERATE OXIDO...
>gi|1197358|emb|CAA59500| (X85250) pyruvate ferredoxin
oxidoreductase [Pyrococcus furiosus]
Length = 185
Score = 99.1 bits (243), Expect = 3e-20
Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 14/171 (8%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
+R G GGQG VT+A+I+ A GKY PFFG E+R APV A+ R ++PI +
Sbjct: 4 VRFHGRGGQGAVTAANILAEAAFLEGKYVQAFPFFGVERRGAPVTAFTRIDNKPIRIKTQ 63
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN---A 122
+ P+V+++ P ++ + +GLK+ G++I+N++ +++LE+L
Sbjct: 64 IYEPDVVVVLDPSLLD-----AVDVTAGLKDEGIVIVNTE-----KSKEEVLEKLKKKPK 113
Query: 123 KIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLG 173
K+ + AT IA +I G + TN A++G T LV +E IE+A+ + F G
Sbjct: 114 KLAIVDATTIALEILGLPI-TNTAILGAVAKATGLVKIESIEEAIKDTFSG 163
sp|O27772|PORC_METTH PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVATE OXIDOREDUCTASE GAMMA
CHAIN) (POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE GAMMA
SUBUNIT)
Length = 180
Score = 96.7 bits (237), Expect = 1e-19
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
IR G GGQG VT+A I+ A GKY+ PFFG E+R APV A+ R D P+ +
Sbjct: 4 IRFHGRGGQGAVTAAEILAKAAFEDGKYSQAFPFFGVERRGAPVMAFTRIDDSPVRRRYQ 63
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
V P+ ++ V+ G + +SGLK++G++++N D + + K++
Sbjct: 64 VYNPDYVV-----VLDEGLVDVVDVFSGLKDDGVVVLNKSGD---------FQGGDVKVH 109
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLG 173
I AT IA + G + N M+G F G+T LV+++ + K + E F G
Sbjct: 110 TIDATGIALETLGRPI-VNTVMLGAFAGVTGLVSIDSLIKIIKETFPG 156
gi|2622871 (AE000929) pyruvate oxidoreductase, gamma subunit
[Methanobacterium thermoautotrophicum]
Length = 261
Score = 96.7 bits (237), Expect = 1e-19
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
IR G GGQG VT+A I+ A GKY+ PFFG E+R APV A+ R D P+ +
Sbjct: 4 IRFHGRGGQGAVTAAEILAKAAFEDGKYSQAFPFFGVERRGAPVMAFTRIDDSPVRRRYQ 63
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
V P+ ++ V+ G + +SGLK++G++++N D + + K++
Sbjct: 64 VYNPDYVV-----VLDEGLVDVVDVFSGLKDDGVVVLNKSGD---------FQGGDVKVH 109
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLG 173
I AT IA + G + N M+G F G+T LV+++ + K + E F G
Sbjct: 110 TIDATGIALETLGRPI-VNTVMLGAFAGVTGLVSIDSLIKIIKETFPG 156
dbj|BAA30772| (AP000006) 185aa long hypothetical ferredoxin oxidoreductase gamma
subunit [Pyrococcus horikoshii]
Length = 185
Score = 84.3 bits (205), Expect = 8e-16
Identities = 57/174 (32%), Positives = 91/174 (51%), Gaps = 13/174 (7%)
Query: 3 RYNIRIAGVGGQGVVTSAHIIGNAMAA-AGKYASLVPFFGSEKRMAPVEAYVRASDQPIY 61
R I I G GGQGV+ ++ I+G A A G YA +G E R A V SD+PI
Sbjct: 5 RREILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPI- 63
Query: 62 EVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN 121
+ +V+ P+ ++ Q Y L +NG ++I + D++P+ ++++ E
Sbjct: 64 DYPKVIEPDYAILLSQQAYDK--------YLPLVKNGGLVIIEE-DLVPNRNEEL--EKG 112
Query: 122 AKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGT 175
K+Y P T+IA + G L N+ +G F G+T++V E IEKA+++ GT
Sbjct: 113 RKVYAYPLTEIAEETTGLSLTMNILTLGLFVGLTKIVKKESIEKAVLDAVPKGT 166
emb|CAB49431.1| (AJ248284) 2-ketoglutarate ferredoxin oxidoreductase, subunit gamma
(korG-2) [Pyrococcus abyssi]
Length = 185
Score = 81.5 bits (198), Expect = 5e-15
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 13/174 (7%)
Query: 3 RYNIRIAGVGGQGVVTSAHIIGNAMAA-AGKYASLVPFFGSEKRMAPVEAYVRASDQPIY 61
R I I G GGQGV+ ++ I+G A A G YA +G E R A V SD+PI
Sbjct: 5 RKEILIGGFGGQGVILASVILGRAAAVYEGFYAVQTQAYGPESRGGASRAEVVISDEPI- 63
Query: 62 EVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN 121
+ +V+ P+ ++ Q + +K+ G++I+ D ++P +K++ E +
Sbjct: 64 DYPKVIEPDYAILLSQQAYDK-------YLPLVKKGGLVIVEED--LVPHRNKEL--EKD 112
Query: 122 AKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGT 175
+Y P T++A + G L N+ +G F G+T +V E IEKA+++ GT
Sbjct: 113 KSVYAYPLTELAEETTGLSLTMNILTLGLFVGLTNIVKRESIEKAVLDAVPKGT 166
sp|Q57956|KORC_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KETOGLUTARATE
OXIDOREDUCTASE GAMMA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE GAMMA SUBUNIT)
>gi|2127896|pir||H64366 ferredoxin oxidoreductase, gamma
subunit - Methanococcus jannaschii >gi|1591240 (U67503)
2-ketoglutarate ferredoxin oxidoreductase, subunit gamma
(korG) [Methanococcus jannaschii]
Length = 187
Score = 73.0 bits (176), Expect = 2e-12
Identities = 50/174 (28%), Positives = 90/174 (50%), Gaps = 14/174 (8%)
Query: 3 RYNIRIAGVGGQGVVTSAHIIGNAMAAA-GKYASLVPFFGSEKRMAPVEAYVRASDQPIY 61
R IR++G GGQG++ + I+G A A K A +G E R ++ V SD+PI
Sbjct: 9 RKEIRLSGFGGQGIILAGVILGRAAALYDNKEAVQTQSYGPEARGGASKSEVVISDEPI- 67
Query: 62 EVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN 121
+ +V+ P++++ Q K +KE G+++++ D + DK + E++
Sbjct: 68 DFPKVIKPDILVCLSQQAYDKYKD-------DIKEGGVVLVDED---LVSTDK--MPEVD 115
Query: 122 AKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGT 175
+Y IP T+IA + + N+ M+G +T +V+ E +EKA+++ GT
Sbjct: 116 VTMYKIPFTRIASEEIKLPIVANIVMLGALTRLTNIVSKESMEKAILDSVPKGT 169
sp|O05650|PORC_THEMA PYRUVATE SYNTHASE SUBUNIT PORC (PYRUVATE OXIDOREDUCTASE GAMMA
CHAIN) (POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE GAMMA
SUBUNIT) >gi|4980499|gb|AAD35109.1|AE001690_3 (AE001690)
pyruvate ferredoxin oxidoreductase, gamma subunit
[Thermotoga maritima]
Length = 192
Score = 71.0 bits (171), Expect = 8e-12
Identities = 52/175 (29%), Positives = 84/175 (47%), Gaps = 11/175 (6%)
Query: 2 KRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIY 61
K + IR G GQG +++ ++ A AGKY P +G+E+ AP+ A+ R D+ I
Sbjct: 6 KYFEIRWHGRAGQGAKSASQMLAEAALEAGKYVQAFPEYGAERTGAPMRAFNRIGDEYIR 65
Query: 62 EVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN 121
V P+V+++ +++ GL E+G++++N+ D E + N
Sbjct: 66 VRSAVENPDVVVVIDETLLSPA------IVEGLSEDGILLVNTVKDF---EFVRKKTGFN 116
Query: 122 AKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGTF 176
KI + AT IA + N M+G +T +V LE IEK IE+ G F
Sbjct: 117 GKICVVDATDIALQEIKRGI-PNTPMLGALVRVTGIVPLEAIEKR-IEKMFGKKF 169
sp|O27114|KORC_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KETOGLUTARATE
OXIDOREDUCTASE GAMMA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE GAMMA SUBUNIT)
>gi|2622138 (AE000875) 2-oxoglutarate oxidoreductase,
gamma subunit [Methanobacterium thermoautotrophicum]
Length = 189
Score = 69.9 bits (168), Expect = 2e-11
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 10/174 (5%)
Query: 3 RYNIRIAGVGGQGVVTSAHIIGNAMAAA-GKYASLVPFFGSEKRMAPVEAYVRASDQPIY 61
R IRIAG GGQGV+ + ++G A + G YA +G E R A V SD I
Sbjct: 5 RKEIRIAGFGGQGVILAGIVLGKAASLYDGLYAVQTQSYGPEARGGASRAEVVISDHEI- 63
Query: 62 EVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN 121
+ +V P++++ Q + + + LK G +I++ D+ ++ E + +
Sbjct: 64 DYPKVQSPDILVAMSHQAL-------LTYMDDLKRGGALIVDPDM-VVEAEIEDFIRARE 115
Query: 122 AKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGT 175
K + PAT+ A + G + NM M+G T +V++ E+A+ + GT
Sbjct: 116 VKYFRAPATRTAEERVGITIVANMVMIGALTEATGIVSVRAAEEAIKDSVPPGT 169
emb|CAA59455| (X85171) gamma subunit of pyruvate ferredoxin oxidoreductase
[Thermotoga maritima]
Length = 213
Score = 69.9 bits (168), Expect = 2e-11
Identities = 52/175 (29%), Positives = 83/175 (46%), Gaps = 11/175 (6%)
Query: 2 KRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIY 61
K + IR G GQG + + ++ A AGKY P +G+E+ AP+ A+ R D+ I
Sbjct: 27 KYFEIRWHGRAGQGAKSVSQMLAEAALEAGKYVQAFPEYGAERTGAPMRAFNRIGDEYIR 86
Query: 62 EVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN 121
V P+V+++ +++ GL E+G++++N+ D E + N
Sbjct: 87 VRSAVENPDVVVVIDETLLSPA------IVEGLSEDGILLVNTVKDF---EFVRKKTGFN 137
Query: 122 AKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGTF 176
KI + AT IA + N M+G +T +V LE IEK IE+ G F
Sbjct: 138 GKICVVDATDIALQEIKRGI-PNTPMLGALVRVTGIVPLEAIEKR-IEKMFGKKF 190
gb|AAD35491.1|AE001720_5 (AE001720) keto/oxoacid ferredoxin oxidoreductase, gamma subunit,
putative [Thermotoga maritima]
Length = 200
Score = 65.2 bits (156), Expect = 5e-10
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 5 NIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVG 64
+IRIAG+ GQG + + I+ A+ GK+ + ++ R V D PI +
Sbjct: 6 SIRIAGISGQGNILAGLILAKALVYEGKWVVQTQSYSAQVRGDVSYCDVLYDDSPI-DYP 64
Query: 65 EVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSD-VDIIPDEDKKILEELNAK 123
E Y +++ I H + + Y +K NG++I++ V +PD K+I K
Sbjct: 65 ESEYFDIVCILHQKAMDE-------LYKSVKVNGVVILDQTFVKNVPDFVKRITR----K 113
Query: 124 IYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKAL 167
I ++PAT+ A T + +N+ MVG + +V L+ +++AL
Sbjct: 114 ILFVPATERAISEFKTAMVSNVIMVGVLAKVCNIVKLDSLKRAL 157
dbj|BAA30775| (AP000006) 170aa long hypothetical ferredoxin oxidoreductase gamma
subunit [Pyrococcus horikoshii]
Length = 170
Score = 65.2 bits (156), Expect = 5e-10
Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 19/170 (11%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
IR AG+GGQGVV + I+G A A G + S R A V SD IY++
Sbjct: 3 IRFAGIGGQGVVLAGVILGEAAAIEGLRVLQTQDYSSASRGGHSIADVIISDGEIYDL-M 61
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
V + +V++ H K S LK +G++II++D+ + PD D
Sbjct: 62 VTHADVLVALHQLGYETAK-------SKLKPDGLLIIDTDL-VKPDRD----------FV 103
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGT 175
P T+IA + G L NM +G T +V E +E+A+ R GT
Sbjct: 104 GAPFTRIAEETTGLALTVNMVALGYLIAKTGIVKPESVEEAIRRRVPKGT 153
emb|CAB49428.1| (AJ248284) 2-ketoglutarate ferredoxin oxidoreductase, subunit gamma
(korG-1) [Pyrococcus abyssi]
Length = 170
Score = 61.7 bits (147), Expect = 5e-09
Identities = 54/170 (31%), Positives = 76/170 (43%), Gaps = 19/170 (11%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
IR AGVGGQGVV + I+G A A G + S R A V SD IY++
Sbjct: 3 IRFAGVGGQGVVLAGVILGEAAAIEGLKVLQTQDYSSASRGGHSIADVIISDGEIYDL-M 61
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
V +V++ H K S LK G++II++D+ + PD +
Sbjct: 62 VTNADVLVALHQLGYETAK-------SKLKPEGLLIIDTDL-VKPDRE----------FV 103
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGT 175
P T+IA + G L NM +G T +V E +E+A+ R GT
Sbjct: 104 GAPFTRIAEETTGLALTVNMVALGYLIAKTGVVKPESVEEAIRRRVPRGT 153
sp|O58496|IORB_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|3257172|dbj|BAA29855| (AP000003) 202aa long
hypothetical indolepyruvate ferredoxin oxidoreductase
beta subunit [Pyrococcus horikoshii]
Length = 202
Score = 60.9 bits (145), Expect = 9e-09
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 26/183 (14%)
Query: 1 MKRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPI 60
MK YNI I GVGGQG++T+A+++G A AG + G +R V AYVR D
Sbjct: 1 MKEYNIVITGVGGQGILTAANLLGWAALKAGYKVRVGEVHGMSQRFGSVIAYVRFGDDVY 60
Query: 61 YEVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIP---------- 110
+ +VI+ + P + + + LK+ G++ N+ IP
Sbjct: 61 GAMVPEGKADVILSFEP-------VEALRYINYLKKGGLVFTNARP--IPPVQVSMGLAT 111
Query: 111 ----DEDKKIL-EELNAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRL-VTLEHIE 164
+E K+I+ EE N K A ++A + AG + TN+ ++G ++ EH++
Sbjct: 112 YPSLEEIKRIVEEEFNGKFLAFDAEKLAIE-AGNVITTNVVLIGALTQTPGFPLSAEHVK 170
Query: 165 KAL 167
+ +
Sbjct: 171 EVI 173
sp|O28249|IORB_ARCFU INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT) >gi|2648506
(AE000963) indolepyruvate ferredoxin oxidoreductase,
subunit beta (iorB) [Archaeoglobus fulgidus]
Length = 201
Score = 60.9 bits (145), Expect = 9e-09
Identities = 52/180 (28%), Positives = 85/180 (46%), Gaps = 22/180 (12%)
Query: 3 RYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYE 62
R NI + GVGGQG +T++ II A AG G +R VE +VR D
Sbjct: 2 RLNIVVVGVGGQGALTTSGIIARAAMRAGLNVVTAETHGMAQRGGSVEVHVRIGDVRAPL 61
Query: 63 VGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIP------------ 110
+ E +I + + + + K L +N ++I+N+ I P
Sbjct: 62 IPEGGADVMIALEPAEALRYAKF--------LNKNTLVILNTRKIIPPSVTAGTAKYPEL 113
Query: 111 DEDKKILEELNAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRL-VTLEHIEKALIE 169
DE L ++ ++ + A++IA + AG+ LATN+ +VG FG + +EH+E+A+ E
Sbjct: 114 DEIIGELRKVTPRVIPVNASEIA-EKAGSVLATNVVVVGMLFGYYSMPFGIEHVEEAIRE 172
emb|CAB50203.1| (AJ248287) indolepyruvate ferredoxin oxidoreductase, subunit beta
(iorB-1) [Pyrococcus abyssi]
Length = 202
Score = 57.0 bits (135), Expect = 1e-07
Identities = 49/183 (26%), Positives = 85/183 (45%), Gaps = 26/183 (14%)
Query: 1 MKRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPI 60
MK YNI I GVGGQG++T+A+++G A AG + G +R V AYVR +
Sbjct: 1 MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
Query: 61 YEVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIP---------- 110
+ +VI+ + P + + + LK+ G++ N+ IP
Sbjct: 61 GAMVPEGKADVILSFEP-------VEALRYINYLKKGGLVFTNARP--IPPVQVSMGLAS 111
Query: 111 ----DEDKKILEE-LNAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRL-VTLEHIE 164
+E +KI+EE K A ++A + AG + TN+ ++G ++ EH++
Sbjct: 112 YPSMEEIRKIVEEDFGGKFLAFDAEKLAIE-AGNVITTNVVLIGALTQTPGFPLSAEHVK 170
Query: 165 KAL 167
+ +
Sbjct: 171 EVI 173
gi|2648475 (AE000961) 2-ketoisovalerate ferredoxin oxidoreductase, subunit
gamma (vorG) [Archaeoglobus fulgidus]
Length = 172
Score = 54.7 bits (129), Expect = 7e-07
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 12 GGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGEVVYPNV 71
GGQG VT+A I+ G Y+ +P FG E+R A V A++R SD+ I + YP+V
Sbjct: 11 GGQGGVTAARILAATAMLQGYYSQSMPQFGPERRGAEVRAFLRISDERIRRKCPITYPDV 70
Query: 72 IMIYHPQVITHGKSYTM 88
++++ ++ +G T+
Sbjct: 71 VILFDLKLSFNGNPETV 87
sp|O07836|IORB_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2209071|dbj|BAA20529| (D86221) indolepyruvate
ferredoxin oxidoreductase beta subunit [Pyrococcus sp.]
Length = 226
Score = 51.9 bits (122), Expect = 4e-06
Identities = 41/133 (30%), Positives = 62/133 (45%), Gaps = 23/133 (17%)
Query: 1 MKRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPI 60
MK YNI I GVGGQG++T+A+++G A AG + G +R V AYVR +
Sbjct: 1 MKEYNIVITGVGGQGILTAANLLGWAALRAGYKVRVGEVHGMSQRFGSVIAYVRFGEDVY 60
Query: 61 YEVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIP---------- 110
+ +VI+ + P + + + LK+ G++ N+ IP
Sbjct: 61 GAMVPEGKADVILSFEP-------VEALRYINYLKKGGLVFTNARP--IPPVQVSMGLAT 111
Query: 111 ----DEDKKILEE 119
DE KKI+EE
Sbjct: 112 YPTLDEMKKIVEE 124
gi|2935170 (AF021092) PorC subunit of pyruvate:flavodoxin oxidoreductase
[Helicobacter pylori]
Length = 171
Score = 50.4 bits (118), Expect = 1e-05
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 4 YNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEV 63
+ IR GQG +T A + + ++ GK +GS KR A + AY R D+PI
Sbjct: 2 FQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNH 61
Query: 64 GEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAK 123
+ P+ +++ P G + ++ KE+ II S ++ +KK E K
Sbjct: 62 ERFMQPDYVLVIDP-----GLVFIENIFANEKEDTTYIITSYLNKEELFEKK-PELKTRK 115
Query: 124 IYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKA 166
++ + +I+ + + N M+G ++ ++ +E ++A
Sbjct: 116 VFLVDCLKISMETLKRPI-PNTPMLGALMKVSGMLAIEAFKEA 157
gi|2460020 (AF013980) pyruvate:ferredoxin oxidoreductase gamma subunit
[Helicobacter pylori] >gi|4155624 (AE001531) Pyruvate
ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 186
Score = 50.0 bits (117), Expect = 2e-05
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 4 YNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEV 63
+ IR GQG +T A + + ++ GK +GS KR A + AY R D+PI
Sbjct: 2 FQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNH 61
Query: 64 GEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAK 123
+ P+ +++ P G + ++ KE+ II S ++ +KK E K
Sbjct: 62 ERFMQPDYVLVIDP-----GLVFIENIFANEKEDTTYIITSYLNKEELFEKK-PELKTRK 115
Query: 124 IYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKA 166
++ + +I+ + + N M+G ++ ++ +E ++A
Sbjct: 116 VFLVDCLKISMETLKRPI-PNTPMLGALMKVSGMLEIEAFKEA 157
gb|AAD07656.1| (AE000572) ferredoxin oxidoreductase, gamma subunit [Helicobacter
pylori 26695]
Length = 186
Score = 50.0 bits (117), Expect = 2e-05
Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
+R GVGGQGV+ + I+ A +G Y + + S+ R P + + + + E
Sbjct: 5 LRFTGVGGQGVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDI------LLDRDE 58
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
+++P +++ + F S +K+ G+++I+ ++ + P ++ +E +IY
Sbjct: 59 IIFPYAKEGEIDFMLSVAQISYNQFKSDIKQGGIVVIDPNL-VTPTKE----DEEKYQIY 113
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGITRLV 158
IP IA+D G + ++ + +T+ V
Sbjct: 114 KIPIISIAKDEVGNIITQSVVALAITVELTKCV 146
gi|4155077 (AE001486) SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter
pylori J99]
Length = 184
Score = 49.2 bits (115), Expect = 3e-05
Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
+R GVGGQGV+ + I+ A +G Y + + S+ R P + + + + E
Sbjct: 5 LRFTGVGGQGVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDI------LLDKDE 58
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
+++P +++ + F S +K+ G+++I+ ++ + P ++ +E ++Y
Sbjct: 59 IIFPYAKEGEIDFMLSVAQISYNQFKSDIKKGGIVVIDPNL-VTPTKE----DEEKYQLY 113
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGITRLV 158
IP IA+D G + ++ + +T+ V
Sbjct: 114 KIPIISIAKDEVGNIITQSVVALAITVELTKCV 146
gb|AAD08152.1| (AE000617) pyruvate ferredoxin oxidoreductase, gamma subunit
[Helicobacter pylori 26695]
Length = 186
Score = 47.3 bits (110), Expect = 1e-04
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 7/163 (4%)
Query: 4 YNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEV 63
+ IR GQG +T A + + ++ GK +GS KR A + AY R D+PI
Sbjct: 2 FQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNH 61
Query: 64 GEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAK 123
+ P+ +++ P G + ++ KE+ II S ++ +KK E K
Sbjct: 62 ERFMQPDYVLVIDP-----GLVFIENIFANEKEDTTYIITSYLNKEELFEKK-PELKTRK 115
Query: 124 IYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKA 166
++ + +I+ + + N M+G ++ ++ + ++A
Sbjct: 116 VFLVDCLKISMETLKRPI-PNTPMLGALMKVSGMLEIGAFKEA 157
gi|2935181 (AF021094) OorC subunit of 2-oxoglutarate:acceptor oxidoreductase
[Helicobacter pylori]
Length = 184
Score = 46.9 bits (109), Expect = 1e-04
Identities = 38/157 (24%), Positives = 74/157 (46%), Gaps = 19/157 (12%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQ----PIY 61
+R GVGGQGV+ + I+ A A+G Y + + S+ R P + + P
Sbjct: 5 LRFTGVGGQGVLLAGEILAEAKIASGGYGTKTSTYTSQVRGGPTKVDLSLDRNEIIFPYG 64
Query: 62 EVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELN 121
+ GE+ + M+ Q+ SY F S +K+ G+++++ ++ + P ++ +E
Sbjct: 65 KEGEIDF----MLSVAQI-----SYNQ-FKSDIKQGGIVVMDPNL-VTPTKE----DEEK 109
Query: 122 AKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLV 158
++Y IP IA+D G + ++ + T+ V
Sbjct: 110 YQLYKIPIISIAKDEVGNIITQSVVALAITAEFTKCV 146
emb|CAB49133.1| (AJ248283) indolepyruvate ferredoxin oxidoreductase, subunit beta
(iorB-2) [Pyrococcus abyssi]
Length = 194
Score = 44.9 bits (104), Expect = 6e-04
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 YNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQ---PI 60
+N+ IAGVGGQG +T + IIGNA G + G +R V +Y+R D+ P+
Sbjct: 3 FNLIIAGVGGQGGLTLSRIIGNAAMVEGYRVRIGETLGMSQRYGSVLSYLRFGDEIYSPL 62
Query: 61 YEVGEVVYPNVIMIYHP 77
E G+ N+++ P
Sbjct: 63 IEEGKA---NLMLALEP 76
sp|O29779|KORC_ARCFU 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC (2-KETOGLUTARATE
OXIDOREDUCTASE GAMMA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE GAMMA
SUBUNIT) >gi|2650158 (AE001072) 2-ketoglutarate
ferredoxin oxidoreductase, subunit gamma (korG)
[Archaeoglobus fulgidus]
Length = 187
Score = 43.0 bits (99), Expect = 0.002
Identities = 28/85 (32%), Positives = 39/85 (44%), Gaps = 7/85 (8%)
Query: 2 KRYNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIY 61
+ NIRIAG GGQGV+ + ++ A A GK +G E R A + SD I
Sbjct: 3 REVNIRIAGTGGQGVIKAGLVLAEAFALEGKNVVQTQSYGPEARGGASRADIIVSDDEID 62
Query: 62 EVG-------EVVYPNVIMIYHPQV 79
G V++ + Y+PQV
Sbjct: 63 FPGLRRVDYLLVLHDSAYRKYYPQV 87
dbj|BAA29301.1| (AP000001) 196aa long hypothetical indolepyruvate ferredoxin
oxidoreductase beta subunit [Pyrococcus horikoshii]
Length = 196
Score = 42.6 bits (98), Expect = 0.003
Identities = 24/65 (36%), Positives = 36/65 (54%), Gaps = 3/65 (4%)
Query: 4 YNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQ---PI 60
+N+ IAGVGGQG +T + IIGNA G + G +R V +Y+R ++ P+
Sbjct: 5 FNLIIAGVGGQGGLTLSRIIGNAAMIEGYRVRIGETLGMSQRYGSVLSYLRFGEEVYSPL 64
Query: 61 YEVGE 65
E G+
Sbjct: 65 IEEGK 69
gi|622958 (U16822) pyruvate:ferredoxin oxidoreductas proprotein [Trichomonas
vaginalis]
Length = 1157
Score = 42.6 bits (98), Expect = 0.003
Identities = 36/141 (25%), Positives = 64/141 (44%), Gaps = 25/141 (17%)
Query: 79 VITHGKSYTMPF--YSGLKENGMIIIN--SDVDI---IPDEDKKILEELNAKIYYIPATQ 131
+ H SY F LK+ G+ +IN D+ +P +K + E +AK+Y I ATQ
Sbjct: 484 IACHNPSYLHKFDMTKQLKKGGVFVINFPGSADLNKDLPGSFRKAIAEKDAKLYTIDATQ 543
Query: 132 IARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGTFVASGGTTALDSAIEX 191
IA D+ NM M FFG+ ++ E AL+++ + + G
Sbjct: 544 IAIDLK-LPGRINMLMQTVFFGLANIIPAEEC-IALLKKSIAKQYARKG----------- 590
Query: 192 XXXXXQELLAKNMEVIKYTMK 212
+E++ KN +++ + ++
Sbjct: 591 -----KEVIQKNWDMVDHALQ 606
gi|622960 (U16823) pyruvate:ferredoxin oxidoreductase proprotein [Trichomonas
vaginalis]
Length = 1157
Score = 42.2 bits (97), Expect = 0.004
Identities = 35/141 (24%), Positives = 66/141 (45%), Gaps = 25/141 (17%)
Query: 79 VITHGKSYTMPF--YSGLKENGMIIIN--SDVDI---IPDEDKKILEELNAKIYYIPATQ 131
+ H SY F LK+ G+ +IN ++D+ +P ++ + E +AK+Y I ATQ
Sbjct: 484 IACHNPSYLHKFDMTKQLKQGGVFVINFPGNLDLNKDLPGSFRRSIAEKDAKLYTIDATQ 543
Query: 132 IARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGGTFVASGGTTALDSAIEX 191
IA D+ NM M FFG+ ++ E AL+++ + + G
Sbjct: 544 IAIDLK-LPGRINMLMQTVFFGLANIIPAEEC-IALLKKSIAKQYARKG----------- 590
Query: 192 XXXXXQELLAKNMEVIKYTMK 212
+E++ KN +++ + ++
Sbjct: 591 -----KEVIQKNWDMVDHALQ 606
sp|P52647|NIFJ_ECOLI PROBABLE PYRUVATE-FLAVODOXIN OXIDOREDUCTASE
>gi|1742250|dbj|BAA14982| (D90775) Pyruvate-flavodoxin
oxidoreductase (EC 1.-.-.-). [Escherichia coli]
>gi|1742256|dbj|BAA14987| (D90776) Pyruvate-flavodoxin
oxidoreductase (EC 1.-.-.-). [Escherichia coli]
>gi|1787642 (AE000234) putative oxidoreductase, Fe-S
subunit [Escherichia coli]
Length = 1174
Score = 41.0 bits (94), Expect = 0.009
Identities = 41/159 (25%), Positives = 70/159 (43%), Gaps = 19/159 (11%)
Query: 10 GVGGQGVVTSAH----IIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
G+G G V++ IIGN+ YA + S+K +++R S+QPI
Sbjct: 424 GLGSDGSVSATKNNIKIIGNSTPW---YAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL 480
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDI------IPDEDKKILEE 119
+ + + + Q I Y M LK G+ ++N+ +P E + +L +
Sbjct: 481 ISQADFVGCHQLQFID---KYQMA--ERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQ 535
Query: 120 LNAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLV 158
A+ Y I A +IAR+ G N M FF +T+++
Sbjct: 536 KKARFYVINAAKIARE-CGLAARINTVMQMAFFHLTQIL 573
sp|O27881|IORB_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT) >gi|2622989
(AE000938) indolepyruvate oxidoreductase, beta subunit
[Methanobacterium thermoautotrophicum]
Length = 196
Score = 39.1 bits (89), Expect = 0.033
Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 43/169 (25%)
Query: 4 YNIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEV 63
YNI + GVGGQG++ ++ IIG A + G +R V +R +
Sbjct: 3 YNIYVCGVGGQGIIKTSVIIGEAAMKKDINVVMSEIHGMAQRGGSVSTEIR--------I 54
Query: 64 GEVVYPNVIMIYHPQVITHGKSYTMPFYSGLK---------ENGMIIINSDVDIIP---- 110
GEV H +I G++ + + L+ E +I+N+ V IP
Sbjct: 55 GEV---------HGSIIPDGEADLVLAFEPLEAIRALPKMSEESEVILNTSV--IPPFNL 103
Query: 111 ----------DEDKKILEELNAKIYYIPATQIARDIAGTELATNMAMVG 149
DE LEE + A +IA AG L+ NM M+G
Sbjct: 104 MRSPHPYPPLDEIMSTLEERAGSVRGFNAEEIALK-AGHILSLNMVMLG 151
sp|O26801|VORA_METTH KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORA (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE ALPHA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE ALPHA SUBUNIT) >gi|2621791 (AE000849)
2-oxoisovalerate oxidoreductase, alpha subunit
[Methanobacterium thermoautotrophicum]
Length = 477
Score = 39.1 bits (89), Expect = 0.033
Identities = 35/149 (23%), Positives = 63/149 (41%), Gaps = 17/149 (11%)
Query: 6 IRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
++IAG GGQGV++ + A + G++ S P +G E+R V S + +
Sbjct: 299 VKIAGFGGQGVLSMGLTLAQAACSEGRHTSWYPAYGPEQRGGTSSCGVVISGERVGSPA- 357
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDEDKKILEELNAKIY 125
V P+V++ + + F + + G+I+ +S + +
Sbjct: 358 VDTPDVLVALNQPSLDE-------FADDVADGGIILYDSTTASFSGGAVRAMG------- 403
Query: 126 YIPATQIARDIAGTELATNMAMVGTFFGI 154
+PA +IAR GT A N M+G +
Sbjct: 404 -VPALEIARK-HGTARAANTVMLGVMMAL 430
gi|960283 (L27221) pyruvate:ferredoxin oxidoreductase [Giardia lamblia]
Length = 1253
Score = 38.7 bits (88), Expect = 0.043
Identities = 23/93 (24%), Positives = 47/93 (49%), Gaps = 10/93 (10%)
Query: 79 VITHGKSYTMPF--YSGLKENGMIIINSDVDII-------PDEDKKILEELNAKIYYIPA 129
V H +SY F G+KE+G ++N++ D + P E K+ + N ++Y + A
Sbjct: 510 VACHAQSYVSKFNVLHGIKEDGFFVLNTEHDTVETLEKYLPAEMKREIARKNIRVYAVNA 569
Query: 130 TQIARDIA-GTELATNMAMVGTFFGITRLVTLE 161
++A+ + G + T M + G+++L+ +
Sbjct: 570 NKVAQSVGLGGRINTIMILFFLKLGLSKLLDFD 602
pir||B53708 indolepyruvate synthase (EC 1.2.7.-) beta subunit - Pyrococcus
furiosus (fragment) >gi|547119|bbs|149185
indolepyruvate ferredoxin oxidoreductase beta subunit,
IOR beta {N-terminal} [Pyrococcus furiosus, DSM 3638,
Peptide Partial, 38 aa]
Length = 38
Score = 38.7 bits (88), Expect = 0.043
Identities = 17/31 (54%), Positives = 23/31 (73%)
Query: 1 MKRYNIRIAGVGGQGVVTSAHIIGNAMAAAG 31
+K YNI I G GGQG++T+A+I+G A AG
Sbjct: 2 LKEYNIVITGWGGQGILTAANILGXAALRAG 32
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus >gi|4558092|pdb|1B0P|B
Chain B, Crystal Structure Of Pyruvate-Ferredoxin
Oxidoreductase From Desulfovibrio Africanus
>gi|4558221|pdb|2PDA|A Chain A, Crystal Structure Of The
Complex Between Pyruvate- Ferredoxin Oxidoreductase From
Desulfovibrio Africanus And Pyruvate.
>gi|4558222|pdb|2PDA|B Chain B, Crystal Structure Of The
Complex Between Pyruvate- Ferredoxin Oxidoreductase From
Desulfovibrio Africanus And Pyruvate.
Length = 1231
Score = 37.1 bits (84), Expect = 0.13
Identities = 48/197 (24%), Positives = 79/197 (39%), Gaps = 27/197 (13%)
Query: 10 GVGGQGVV----TSAHIIG-NAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVG 64
G+G G V + IIG N A Y S + S+K +++R ++PI
Sbjct: 423 GLGADGTVGANKQAIKIIGDNTDLFAQGYFS----YDSKKSGGITISHLRFGEKPIQSTY 478
Query: 65 EVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDED-------KKIL 117
V + + ++P + G+K+ G ++NS + D D K+ +
Sbjct: 479 LVNRADYVACHNPAYVG-----IYDILEGIKDGGTFVLNSPWSSLEDMDKHLPSGIKRTI 533
Query: 118 EELNAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLE---HIEKALIERFLG- 173
K Y I A +IA D+ G NM M FF + ++ E + K I + G
Sbjct: 534 ANKKLKFYNIDAVKIATDV-GLGGRINMIMQTAFFKLAGVLPFEKAVDLLKKSIHKAYGK 592
Query: 174 -GTFVASGGTTALDSAI 189
G + T A+D A+
Sbjct: 593 KGEKIVKMNTDAVDQAV 609
emb|CAA70873| (Y09702) pyruvate-ferredoxin oxidoreductase [Desulfovibrio
africanus]
Length = 1232
Score = 37.1 bits (84), Expect = 0.13
Identities = 48/197 (24%), Positives = 79/197 (39%), Gaps = 27/197 (13%)
Query: 10 GVGGQGVV----TSAHIIG-NAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVG 64
G+G G V + IIG N A Y S + S+K +++R ++PI
Sbjct: 424 GLGADGTVGANKQAIKIIGDNTDLFAQGYFS----YDSKKSGGITISHLRFGEKPIQSTY 479
Query: 65 EVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDVDIIPDED-------KKIL 117
V + + ++P + G+K+ G ++NS + D D K+ +
Sbjct: 480 LVNRADYVACHNPAYVG-----IYDILEGIKDGGTFVLNSPWSSLEDMDKHLPSGIKRTI 534
Query: 118 EELNAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLE---HIEKALIERFLG- 173
K Y I A +IA D+ G NM M FF + ++ E + K I + G
Sbjct: 535 ANKKLKFYNIDAVKIATDV-GLGGRINMIMQTAFFKLAGVLPFEKAVDLLKKSIHKAYGK 593
Query: 174 -GTFVASGGTTALDSAI 189
G + T A+D A+
Sbjct: 594 KGEKIVKMNTDAVDQAV 610
gb|AAF14584.1|AF191494_1 (AF191494) nucleotide excision repair protein XP-F homolog
[Arabidopsis thaliana]
Length = 688
Score = 35.2 bits (79), Expect = 0.49
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 44 KRMAPVEAYVRASDQPIYEVGEVVYPNVIMIYHPQV 79
K++ PV Y SDQPI +++ P+VI++YHP +
Sbjct: 595 KKLPPVHFYALESDQPIL---DILKPSVIIVYHPDM 627
gb|AAF01274.1|AF160500_1 (AF160500) repair endonuclease [Arabidopsis thaliana]
Length = 956
Score = 35.2 bits (79), Expect = 0.49
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 44 KRMAPVEAYVRASDQPIYEVGEVVYPNVIMIYHPQV 79
K++ PV Y SDQPI +++ P+VI++YHP +
Sbjct: 595 KKLPPVHFYALESDQPIL---DILKPSVIIVYHPDM 627
dbj|BAA80471.1| (AP000061) 616aa long hypothetical 2-oxoacid--ferredoxin
oxidoreductase , alpha chain [Aeropyrum pernix]
Length = 616
Score = 34.8 bits (78), Expect = 0.65
Identities = 40/187 (21%), Positives = 75/187 (39%), Gaps = 10/187 (5%)
Query: 13 GQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGEVVYPNVI 72
G V+ S N M A Y V PV+ + + ++ V P I
Sbjct: 5 GYEVLGSREYHSNIMGAHSYYHLRVQQHRPRSLKLPVDGVLALDAESVFTHFRDVRPGGI 64
Query: 73 MIYHPQVITHGKSYTMPFYSGLKENGMIIINS-DVDIIPDEDKKILEELNAKIYYIPATQ 131
++Y P + P LK+ + +S + + + K+ EE A+I +P +
Sbjct: 65 LVYDPGTKSTRVDAIQPMAGPLKKRLKSLFDSRGMQPVVESAVKLAEEAGARIVGLPLKE 124
Query: 132 IARDIA---GTELATNMAMVGTFFGITRL-----VTLEHIEKALIERFLGGTFVASGGTT 183
+ + ++ G +A + T G+ + V +E+IEKA+ +F G V +
Sbjct: 125 MLKTLSERTGAPVARVSRALNT-LGLASMLYMLGVPVEYIEKAISLQFAGKEKVINMNVE 183
Query: 184 ALDSAIE 190
A+ A++
Sbjct: 184 AVRIAVD 190
emb|CAA12243| (AJ224959) putative ferredoxin-oxidoreductase [Thauera aromatica]
Length = 104
Score = 34.8 bits (78), Expect = 0.65
Identities = 19/56 (33%), Positives = 30/56 (52%)
Query: 5 NIRIAGVGGQGVVTSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPI 60
+I AG GG GV+T+ ++ +A AG YA + G++ R A +R S P+
Sbjct: 7 SITFAGSGGAGVMTAGSMLLDAAGHAGWYAYMTRSSGAQIRGGEAAAMLRLSTTPV 62
sp|P52965|NIFJ_SYNY3 PUTATIVE PYRUVATE-FLAVODOXIN OXIDOREDUCTASE
>gi|1006618|dbj|BAA10774| (D64005) pyruvate
oxidoreductase [Synechocystis sp.]
Length = 1199
Score = 33.2 bits (74), Expect = 1.9
Identities = 38/162 (23%), Positives = 65/162 (39%), Gaps = 19/162 (11%)
Query: 10 GVGGQGVV----TSAHIIGNAMAAAGKYASLVPFFGSEKRMAPVEAYVRASDQPIYEVGE 65
G+G G V S IIG YA + S+K + +++R PI
Sbjct: 424 GLGSDGTVGANKNSIKIIGED---TDNYAQGYFVYDSKKSGSVTVSHLRFGPNPILSTYL 480
Query: 66 VVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGMIIINSDV---DIIPDEDKKILEEL-- 120
+ N + + + + + G+ ++NS +I + +K+ +E+
Sbjct: 481 ISQANFVACHQWEFLEQ-----FEVLEPAVDGGVFLVNSPYGPEEIWREFPRKVQQEIID 535
Query: 121 -NAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLE 161
N K+Y I A +ARD AG TN M FF + ++ E
Sbjct: 536 KNLKVYTINANDVARD-AGMGRRTNTVMQTCFFALAGVLPRE 576
pir||JC4919 2-oxoacid ferredoxin oxidoreductase (EC 1.-.-.-) alpha chain -
Sulfolobus acidocaldarius >gi|1565183|dbj|BAA10898|
(D64024) 2-oxoacid:ferredoxin oxidoreductase subunit
alpha [Sulfolobus sp. 7]
Length = 632
Score = 32.1 bits (71), Expect = 4.3
Identities = 14/26 (53%), Positives = 19/26 (72%)
Query: 8 IAGVGGQGVVTSAHIIGNAMAAAGKY 33
I G G G+ T+A+I GNA+A+AG Y
Sbjct: 7 IGGAQGTGIDTAANIFGNAVASAGYY 32
sp|P80911|IORB_METTM INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (IOR) (INDOLEPYRUVATE
FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
Length = 28
Score = 31.3 bits (69), Expect = 7.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 4 YNIRIAGVGGQGVVTSAHIIGNA 26
YNI + GVGGQG+ ++ IIG A
Sbjct: 2 YNIYVXGVGGQGIXKTSVIIGEA 24
sp|Q58296|Y886_METJA PUTATIVE MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MJ0886
>gi|2129131|pir||F64410 molybdenum cofactor biosynthesis
protein moeA homolog - Methanococcus jannaschii
>gi|1591564 (U67532) molybdenum cofactor biosynthesis
protein (moeA) [Methanococcus jannaschii]
Length = 620
Score = 31.3 bits (69), Expect = 7.3
Identities = 29/102 (28%), Positives = 46/102 (44%), Gaps = 14/102 (13%)
Query: 40 FGSEKRMAPVEAYVRASDQPIYEVGEVVYPNVIMIYHPQVITHGKSYTMPFYSGLKENGM 99
FG EK + + VR I G V Y VI++ H + Y K +G
Sbjct: 318 FGDEKNVVKAKFPVRY----ISAKGRVEYLPVILVKHKNGFSA--------YPITKGSGA 365
Query: 100 IIINSDVD--IIPDEDKKILEELNAKIYYIPATQIARDIAGT 139
I S+ D II DE+K+ILE + +++ ++ +I G+
Sbjct: 366 ITSLSEADGYIIIDENKEILENEDVEVHLFGDVKVGLNIIGS 407
gi|3377591 (AF075050) similar to (AJ223828) small glutamine-rich
tetratricopeptide (SGT) [Homo sapiens] [Homo sapiens]
Length = 120
Score = 30.9 bits (68), Expect = 9.6
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 115 KILEELNAKIYYIPATQIARDIAGTELATNMAMVGTFFGITRLVTLEHIEKALIERFLGG 174
KI E+ ++ T ++ D+A L N A + + + ++ + ++ +GG
Sbjct: 10 KIAEQKLREVSSPTGTGLSFDMAS--LINNPAFISMAASLMQNPQVQQLMSGMMTNAIGG 67
Query: 175 TFVASGGTTALDSAIEXXXXXXQELLAKNMEVIK 208
GG T L S I+ Q++ +N E+I+
Sbjct: 68 PAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIE 101
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.319 0.136 0.377
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52979960
Number of Sequences: 444417
Number of extensions: 2158924
Number of successful extensions: 5039
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4976
Number of HSP's gapped (non-prelim): 53
length of query: 230
length of database: 136,724,657
effective HSP length: 57
effective length of query: 173
effective length of database: 111,392,888
effective search space: 19270969624
effective search space used: 19270969624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 68 (30.9 bits)
