Score E
Sequences producing significant alignments: (bits) Value
gi|2983630 (AE000727) ferredoxin oxidoreductase beta subuni... 561 e-159
gi|2983645 (AE000728) ferredoxin oxidoreductase beta subuni... 268 3e-71
sp|Q57957|KORB_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (... 94 1e-18
sp|O29782|KORB_ARCFU 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (... 90 3e-17
gi|4155627 (AE001531) Pyruvate ferrodoxin oxidoreductase [H... 89 5e-17
gi|2935173 (AF021092) PorB subunit of pyruvate:flavodoxin o... 87 2e-16
gb|AAD08155.1| (AE000617) pyruvate ferredoxin oxidoreductas... 87 2e-16
gi|2565251 (AF013980) pyruvate:ferredoxin oxidoreductase be... 87 2e-16
gb|AAD35490.1|AE001720_4 (AE001720) keto/oxoacid ferredoxin... 85 7e-16
gi|2648852 (AE000986) pyruvate ferredoxin oxidoreductase, s... 85 7e-16
sp|O27771|PORB_METTH PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVA... 84 1e-15
sp|Q57714|PORB_METJA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVA... 84 1e-15
emb|CAB49427.1| (AJ248284) 2-ketoglutarate ferredoxin oxido... 84 2e-15
dbj|BAA30777| (AP000006) 284aa long hypothetical ferredoxin... 83 3e-15
sp|O27113|KORB_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (... 83 3e-15
sp|Q56317|PORB_THEMA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVA... 78 9e-14
dbj|BAA80470.1| (AP000061) 309aa long hypothetical 2-oxoaci... 76 3e-13
gb|AAD07655.1| (AE000572) ferredoxin oxidoreductase, beta s... 76 3e-13
gi|4155085 (AE001486) SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCT... 76 3e-13
gi|3323259 (AE001262) pyruvate oxidoreductase [Treponema pa... 75 1e-12
pir||S22397 pyruvate synthase (EC 1.2.7.1) - Halobacterium ... 73 2e-12
emb|CAB43934.1| (Y17727) pyruvate ferredoxin oxidoreductase... 73 4e-12
gi|3139140 (AF064035) pyruvate-ferredoxin oxidoreductase 1 ... 73 4e-12
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxi... 72 7e-12
emb|CAA70873| (Y09702) pyruvate-ferredoxin oxidoreductase [... 72 7e-12
emb|CAA69456| (Y08256) pyruvate-ferredoxin oxidoreductase b... 71 9e-12
emb|CAB49430.1| (AJ248284) 2-ketoglutarate ferredoxin oxido... 69 4e-11
gb|AAD55754.1|AF132546_1 (AF132546) pyruvate:ferredoxin oxi... 69 6e-11
emb|CAB43933.1| (Y17726) pyruvate ferredoxin oxidoreductase... 69 6e-11
gi|3172410 (AF064550) putative pyruvate-ferredoxin oxidored... 69 6e-11
emb|CAB50270.1| (AJ248287) 2-KETOVALERATE OXIDOREDUCTASE SU... 68 8e-11
sp|O58414|VORB_PYRHO KETOISOVALERATE OXIDOREDUCTASE SUBUNIT... 68 1e-10
emb|CAB60188.1| (AL132824) putative oxidoreductase beta-sub... 68 1e-10
dbj|BAA29772| (AP000003) 314aa long hypothetical ferredoxin... 68 1e-10
emb|CAA75642| (Y15464) ferredoxin oxidoreductase-like (beta... 68 1e-10
sp|O58417|PORB_PYRHO PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVA... 68 1e-10
emb|CAB50267.1| (AJ248287) PYRUVATE SYNTHASE SUBUNIT PORB (... 68 1e-10
dbj|BAA29776| (AP000003) 334aa long hypothetical ferredoxin... 68 1e-10
sp|Q51802|VORB_PYRFU KETOISOVALERATE OXIDOREDUCTASE SUBUNIT... 68 1e-10
dbj|BAA30773| (AP000006) 281aa long hypothetical ferredoxin... 67 2e-10
sp|Q51805|PORB_PYRFU PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVA... 67 2e-10
sp|Q53046|NIFJ_RHORU PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi... 67 2e-10
gi|2648477 (AE000961) 2-ketoisovalerate ferredoxin oxidored... 66 3e-10
dbj|BAA81139.1| (AP000063) 318aa long hypothetical 2-oxoaci... 66 4e-10
pir||QQKBFP pyruvate (flavodoxin) dehydrogenase (EC 1.2.99.... 66 4e-10
sp|P03833|NIFJ_KLEPN PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi... 66 4e-10
sp|P19543|NIFJ_ENTAG PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi... 66 5e-10
gi|2935180 (AF021094) OorB subunit of 2-oxoglutarate:accept... 64 1e-09
sp|Q06879|NIFJ_ANASP PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi... 64 1e-09
emb|CAA16031| (AL021246) hypothetical protein Rv2454c [Myco... 64 1e-09
sp|P52965|NIFJ_SYNY3 PUTATIVE PYRUVATE-FLAVODOXIN OXIDOREDU... 64 1e-09
gb|AAD55756.1|AF132673_1 (AF132673) pyruvate:ferredoxin oxi... 64 2e-09
emb|CAB43935.1| (Y17727) pyruvate ferredoxin oxidoreductase... 64 2e-09
sp|O26801|VORA_METTH KETOISOVALERATE OXIDOREDUCTASE SUBUNIT... 62 4e-09
sp|P52647|NIFJ_ECOLI PROBABLE PYRUVATE-FLAVODOXIN OXIDOREDU... 62 4e-09
pir||JC4920 2-oxoacid ferredoxin oxidoreductase (EC 1.-.-.-... 62 6e-09
gb|AAD17274| (AF119361) ferredoxin oxidoreductase b-subunit... 62 7e-09
gi|1888325 (U30149) pyruvate:ferredoxin oxidoreductase [Ent... 61 1e-08
gi|2649862 (AE001053) 2-oxoacid ferredoxin oxidoreductase, ... 60 2e-08
gi|622960 (U16823) pyruvate:ferredoxin oxidoreductase propr... 55 7e-07
gi|622958 (U16822) pyruvate:ferredoxin oxidoreductas propro... 55 7e-07
pir||S58236 pyruvate oxidoreductase - Entamoeba histolytica... 55 1e-06
gi|960283 (L27221) pyruvate:ferredoxin oxidoreductase [Giar... 53 3e-06
gi|2621611 (AE000836) 2-oxoacid:ferredoxin oxidoreductase, ... 52 5e-06
sp|O27880|IORA_METTH INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT ... 51 1e-05
gb|AAD36241.1|AE001773_10 (AE001773) 2-oxoacid ferredoxin o... 45 0.001
sp|O28783|IORA_ARCFU INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT ... 41 0.016
sp|O58495|IORA_PYRHO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT ... 38 0.14
sp|O07835|IORA_PYRKO INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT ... 37 0.18
sp|Q57704|Y256_METJA HYPOTHETICAL PROTEIN MJ0256 >gi|212919... 37 0.24
emb|CAB50202.1| (AJ248287) indolepyruvate ferredoxin oxidor... 35 0.70
dbj|BAA30238| (AP000005) 618aa long hypothetical indolepyru... 34 1.2
gb|AAF12240.1|AE001862_66 (AE001862) minor tail protein gp2... 34 2.0
emb|CAB49988.1| (AJ248286) indolepyruvate ferredoxin oxidor... 34 2.0
gi|3219361 (AF068249) biotin carboxylase precursor [Glycine... 34 2.0
gi|2253384 (AF007100) biotin carboxylase precursor [Glycine... 34 2.0
gi|870726 (L38260) biotin carboxylase subunit [Nicotiana ta... 34 2.0
gi|1905876 (U90879) biotin carboxylase subunit [Arabidopsis... 32 4.6
emb|CAA70282| (Y09061) acetyl-CoA carboxylase, biotin carbo... 32 4.6
emb|CAB45023.1| (AL078635) putative phosphonopyruvate decar... 32 6.0
dbj|BAA12569| (D84432) YqhX [Bacillus subtilis] >gi|2634868... 32 6.0
pir||I39867 microbial serine proteinase (EC 3.4.21.-) ispQ ... 32 6.0
gb|AAF19569.1|AC011708_12 (AC011708) putative bZIP transcri... 32 7.9
sp|Q58626|PYCA_METJA PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVI... 32 7.9
dbj|BAA10298| (D64001) biotin carboxylase [Synechocystis sp.] 32 7.9
gi|2983630 (AE000727) ferredoxin oxidoreductase beta subunit [Aquifex
aeolicus]
Length = 289
Score = 561 bits (1429), Expect = e-159
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MGLEYVRISPGFEKYMPRDYVDLVKYGPFGRKVDVMDMGQFKELVEEHPMCAGCYMAYFI 60
MGLEYVRISPGFEKYMPRDYVDLVKYGPFGRKVDVMDMGQFKELVEEHPMCAGCYMAYFI
Sbjct: 1 MGLEYVRISPGFEKYMPRDYVDLVKYGPFGRKVDVMDMGQFKELVEEHPMCAGCYMAYFI 60
Query: 61 RVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVASGLKRALSIRFPDKH 120
RVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVASGLKRALSIRFPDKH
Sbjct: 61 RVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVASGLKRALSIRFPDKH 120
Query: 121 KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA 180
KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA
Sbjct: 121 KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA 180
Query: 181 PLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSCN 240
PLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSCN
Sbjct: 181 PLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSCN 240
Query: 241 IEYSIPTREVLADARKREKQDFKFYEWMTD 270
IEYSIPTREVLADARKREKQDFKFYEWMTD
Sbjct: 241 IEYSIPTREVLADARKREKQDFKFYEWMTD 270
gi|2983645 (AE000728) ferredoxin oxidoreductase beta subunit [Aquifex
aeolicus]
Length = 286
Score = 268 bits (679), Expect = 3e-71
Identities = 127/271 (46%), Positives = 188/271 (68%), Gaps = 1/271 (0%)
Query: 1 MGLEYVRISPGFEKYMPRDYVDLVKYGPFGR-KVDVMDMGQFKELVEEHPMCAGCYMAYF 59
M ++ +I+ +++MP++ VDL + +G K VMD+ KEL+EEH +CAGC +
Sbjct: 1 MSVKIFKINEDLKEFMPQEIVDLEEKATWGNPKRGVMDLPYAKELIEEHSLCAGCPESAA 60
Query: 60 IRVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVASGLKRALSIRFPDK 119
R +LP+PEDT+++ + GC L A+ ++ +G+ NAVASG+KR L RFPDK
Sbjct: 61 FRYILASLPSPEDTVIVNSTGCTSLVFPHIALHTVHPLFGNQNAVASGIKRVLEWRFPDK 120
Query: 120 HKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKM 179
KDVVVIAGDG IDIG T+ S+FR+EK TTI DNEVY NTGGQ+SG +P+G++ KM
Sbjct: 121 PKDVVVIAGDGATIDIGLDCTLQSFFRQEKITTICFDNEVYANTGGQDSGATPRGMEFKM 180
Query: 180 APLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
AP GK++DK+ +LA +GC YVAR++ ++PK++ + +++AI AR GPT+IH YT C
Sbjct: 181 APGGKQWDKVPMWQLAIDSGCHYVARLTVSSPKKVEQVVKKAIYVAREVGPTYIHLYTPC 240
Query: 240 NIEYSIPTREVLADARKREKQDFKFYEWMTD 270
+E + + + L + R+R+K+ FKF+E+MTD
Sbjct: 241 ILEIGLNSDQGLWEMRQRDKERFKFFEYMTD 271
sp|Q57957|KORB_METJA 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (2-KETOGLUTARATE
OXIDOREDUCTASE BETA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2129229|pir||A64367 pyruvate oxidoreductase (EC
1.18.-.-) beta chain - Methanococcus jannaschii
>gi|1591241 (U67503) 2-ketoglutarate ferredoxin
oxidoreductase, subunit beta (korB) [Methanococcus
jannaschii]
Length = 270
Score = 94.4 bits (231), Expect = 1e-18
Identities = 63/200 (31%), Positives = 94/200 (46%), Gaps = 13/200 (6%)
Query: 48 HPMCAGCYMAYFIRVFYTALPN----PEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNA 103
H C+GC + F A+ PED I + GC+ ++ +G A
Sbjct: 15 HIFCSGCGNGIVMNCFLKAIEELNIKPEDYIAVSGIGCSSRVPGYLYCDSLHTTHGRPIA 74
Query: 104 VASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNT 163
A+G+K I PDKH VVV GDG L IG +H R T I ++N +YG T
Sbjct: 75 FATGIK----IARPDKH--VVVFTGDGDLAAIGGNHFIHGCRRNIDLTVICINNNIYGMT 128
Query: 164 GGQESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAIL 223
GGQ S +P G + AP G + ++ ++A AG YVAR + +P ++ ++I++ I
Sbjct: 129 GGQVSPTTPYGKKATTAPYGSIENTMDLCKMAIAAGATYVARWTTAHPIQLVRSIKKGI- 187
Query: 224 AARHFGPTFIHAYTSCNIEY 243
+ G FI + C Y
Sbjct: 188 --QKKGFAFIEVVSQCPTYY 205
sp|O29782|KORB_ARCFU 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (2-KETOGLUTARATE
OXIDOREDUCTASE BETA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2650160 (AE001072) 2-ketoglutarate ferredoxin
oxidoreductase, subunit beta (korB) [Archaeoglobus
fulgidus]
Length = 267
Score = 89.7 bits (219), Expect = 3e-17
Identities = 65/219 (29%), Positives = 102/219 (45%), Gaps = 22/219 (10%)
Query: 51 CAGC----YMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVAS 106
CAGC +A FIR + T+V+ GC+ ++ +G A A+
Sbjct: 19 CAGCPNGIVLASFIRAVKRGFER-DKTVVVSGIGCSGRITQYLDFETVHTTHGRALAFAT 77
Query: 107 GLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQ 166
G+K A +VVV GDG + IG +H+ R T ++++N +YG TGGQ
Sbjct: 78 GIKLA------KPELNVVVFMGDGDAVAIGGNHFIHACRRNIDLTAVVINNSLYGMTGGQ 131
Query: 167 ESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAAR 226
+ +P+G + K +P G + +LA AG YVAR + P+ I K I A+ +
Sbjct: 132 LAPTTPEGAKTKTSPYGNVERPFDIAKLAIAAGASYVARFTAYQPRWIEKAIFEAM---Q 188
Query: 227 HFGPTFIHAYTSCNIEYSIPTREVL--ADARKREKQDFK 263
H G + + T C PT + + AD K K++F+
Sbjct: 189 HHGFSVVEVVTGC------PTHQRIKPADLLKHLKENFR 221
gi|4155627 (AE001531) Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori
J99]
Length = 314
Score = 88.9 bits (217), Expect = 5e-17
Identities = 65/220 (29%), Positives = 97/220 (43%), Gaps = 22/220 (10%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTA-GCARLALSQAA-----VPFIYGNYGDT 101
H +C GC +R A+ P IV+G + GC + + VP+I+ + +
Sbjct: 22 HLLCPGCGHGIIVREVLNAVDGP---IVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENG 78
Query: 102 NAVASGLKRALSI-----RFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVD 156
+ SG++ R+ + V GDG DIGF R T I +D
Sbjct: 79 STAISGVEAMYKALVNKGRYQGQRPKFVAFGGDGASYDIGFQFISGCMERGHDMTYICLD 138
Query: 157 NEVYGNTGGQESGMSPKGVQLKMAP-----LGKKFDKINAVELAKTAGCVYVARISPTNP 211
NE Y NTGGQ SG +P G P GKK K + V + + G YVA++SP
Sbjct: 139 NENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKW 198
Query: 212 KRIAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVL 251
K + K I+ A+ GP FI+A + C E+ + + +
Sbjct: 199 KDMNKKIKTALDTE---GPCFINALSPCTTEWKFNSNKTI 235
gi|2935173 (AF021092) PorB subunit of pyruvate:flavodoxin oxidoreductase
[Helicobacter pylori]
Length = 328
Score = 87.0 bits (212), Expect = 2e-16
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 22/220 (10%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTA-GCARLALSQAA-----VPFIYGNYGDT 101
H +C GC +R A+ P IV+G + GC + + VP+I+ + +
Sbjct: 22 HLLCPGCGHGIIVREVLNAVDGP---IVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENG 78
Query: 102 NAVASGLK---RALSI--RFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVD 156
+ SG++ +AL+ R+ + V GDG DIG R T I +D
Sbjct: 79 STAISGVEAMYKALTNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLD 138
Query: 157 NEVYGNTGGQESGMSPKGVQLKMAP-----LGKKFDKINAVELAKTAGCVYVARISPTNP 211
NE Y NTGGQ SG +P G P GKK K + V + + G YVA++SP
Sbjct: 139 NENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKW 198
Query: 212 KRIAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVL 251
K + K I+ A+ GP FI+A + C E+ + + +
Sbjct: 199 KDMNKKIKTALDTE---GPCFINALSPCTTEWKFESNKTI 235
gb|AAD08155.1| (AE000617) pyruvate ferredoxin oxidoreductase, beta subunit
[Helicobacter pylori 26695]
Length = 314
Score = 87.0 bits (212), Expect = 2e-16
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 22/220 (10%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTA-GCARLALSQAA-----VPFIYGNYGDT 101
H +C GC +R A+ P IV+G + GC + + VP+I+ + +
Sbjct: 22 HLLCPGCGHGIIVREVLNAVDGP---IVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENG 78
Query: 102 NAVASGLK---RALSI--RFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVD 156
+ SG++ +AL+ R+ + V GDG DIG R T I +D
Sbjct: 79 STAISGVEAMYKALTNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLD 138
Query: 157 NEVYGNTGGQESGMSPKGVQLKMAP-----LGKKFDKINAVELAKTAGCVYVARISPTNP 211
NE Y NTGGQ SG +P G P GKK K + V + + G YVA++SP
Sbjct: 139 NENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKW 198
Query: 212 KRIAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVL 251
K + K I+ A+ GP FI+A + C E+ + + +
Sbjct: 199 KDMNKKIKTALDTE---GPCFINALSPCTTEWKFESNKTI 235
gi|2565251 (AF013980) pyruvate:ferredoxin oxidoreductase beta subunit
[Helicobacter pylori]
Length = 314
Score = 86.6 bits (211), Expect = 2e-16
Identities = 64/220 (29%), Positives = 96/220 (43%), Gaps = 22/220 (10%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTA-GCARLALSQAA-----VPFIYGNYGDT 101
H +C GC +R A+ P IV+G + GC + + VP+I+ + +
Sbjct: 22 HLLCPGCGHGIIVREVLNAVDGP---IVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENG 78
Query: 102 NAVASGLKRALSI-----RFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVD 156
+ SG++ R+ + V GDG DIG R T I +D
Sbjct: 79 STAISGVEAMYKALVNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLD 138
Query: 157 NEVYGNTGGQESGMSPKGVQLKMAP-----LGKKFDKINAVELAKTAGCVYVARISPTNP 211
NE Y NTGGQ SG +P G P GKK K + V + + G YVA++SP
Sbjct: 139 NENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKW 198
Query: 212 KRIAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVL 251
K + K I+ A+ GP FI+A + C E+ + + +
Sbjct: 199 KDMNKKIKTALDTE---GPCFINALSPCTTEWKFESNKTI 235
gb|AAD35490.1|AE001720_4 (AE001720) keto/oxoacid ferredoxin oxidoreductase, beta subunit,
putative [Thermotoga maritima]
Length = 266
Score = 85.0 bits (207), Expect = 7e-16
Identities = 56/194 (28%), Positives = 96/194 (48%), Gaps = 13/194 (6%)
Query: 51 CAGCYMAYFIRVFYTALPN----PEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVAS 106
C GC ++ F A+ + E V+ GC+ A ++ +G A A+
Sbjct: 20 CPGCGNGIVLKAFLEAVDDLALPKEKVAVVSGIGCSSRATGYLDFNTLHTLHGRAIAFAT 79
Query: 107 GLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQ 166
G+K A PD +VVV+ GDG ++ IG +H+ R T ++ +N +YG TGGQ
Sbjct: 80 GVKLAK----PDF--EVVVMGGDGDILSIGGNHFIHACRRNIDITVVIFNNMIYGMTGGQ 133
Query: 167 ESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAAR 226
S +P+ Q PLG +AVE+A +AG +VAR + + + + +++A+ +
Sbjct: 134 VSSTTPQYYQTSTTPLGAFEKPFDAVEIALSAGATFVARSTVYHYDHLVRVLKKAL---Q 190
Query: 227 HFGPTFIHAYTSCN 240
H G + + T+C+
Sbjct: 191 HRGISVVDVLTNCH 204
gi|2648852 (AE000986) pyruvate ferredoxin oxidoreductase, subunit beta (porB)
[Archaeoglobus fulgidus]
Length = 294
Score = 85.0 bits (207), Expect = 7e-16
Identities = 58/202 (28%), Positives = 89/202 (43%), Gaps = 15/202 (7%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAA-----VPFIYGNYGDTN 102
H C GC + ++ L + + GC + SQ VP+I+ + +
Sbjct: 8 HGACPGCGLPIAVKTVLNLLDGK--VFAVNSTGCLEIISSQYGKNAWNVPYIHSLFENAA 65
Query: 103 AVASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGN 162
AVA+G++ AL VVV AGDG DIG G ++ R I +DNE Y N
Sbjct: 66 AVAAGVEAALRALKRKDEGHVVVFAGDGATADIGIGTLSGAFDRNHDILYICLDNEAYQN 125
Query: 163 TGGQESGMSPKGVQLKMAPLGKKFD-----KINAVELAKTAGCVYVARISPTNPKRIAKT 217
TG Q+SG++P G P GK K + + +A G YVA S I +
Sbjct: 126 TGHQQSGLTPPGESTTTTPAGKVLPGKVGRKKDMISIAVAHGIPYVASSSVGYVSDIRRK 185
Query: 218 IRRAILAARHFGPTFIHAYTSC 239
+++A+ + G +I ++ C
Sbjct: 186 VKKAV---KFEGAKYIQIHSPC 204
sp|O27771|PORB_METTH PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2622869 (AE000929) pyruvate oxidoreductase, beta
subunit [Methanobacterium thermoautotrophicum]
Length = 288
Score = 84.3 bits (205), Expect = 1e-15
Identities = 63/206 (30%), Positives = 93/206 (44%), Gaps = 16/206 (7%)
Query: 44 LVEEHPMCAGCYMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAA-----VPFIYGNY 98
L H CAGC +R+ L ++T+ + + GC + + +P+I+ +
Sbjct: 9 LAPGHRGCAGCGATVGVRLALKVLG--KNTVAVSSTGCLEVITTPYPETAWRIPWIHVAF 66
Query: 99 GDTNAVASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNE 158
+ AVASG++RAL + D +VV AGDGG DIG + R I DNE
Sbjct: 67 ENAAAVASGVERALKAKGRDD-VNVVAFAGDGGTADIGLQALSGAMERGHNIIYICYDNE 125
Query: 159 VYGNTGGQESGMSPKGVQLKMAPLGKKF-----DKINAVELAKTAGCVYVARISPTNPKR 213
Y NTG Q S +P G +P GK+ K N + G YVA S + P+
Sbjct: 126 AYMNTGIQRSASTPYGASTTTSPHGKESFGEDRPKKNMPLIMAAHGVPYVATASISYPED 185
Query: 214 IAKTIRRAILAARHFGPTFIHAYTSC 239
+ +R+ A GP +IH + C
Sbjct: 186 FMEKVRK---AKETDGPAYIHLHQPC 208
sp|Q57714|PORB_METJA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2127891|pir||C64333 ferredoxin oxidoreductase beta
subunit homolog - Methanococcus jannaschii >gi|1590994
(U67482) pyruvate ferredoxin oxidoreductase, subunit
beta (porB) [Methanococcus jannaschii]
Length = 298
Score = 84.3 bits (205), Expect = 1e-15
Identities = 69/249 (27%), Positives = 101/249 (39%), Gaps = 22/249 (8%)
Query: 35 VMDMGQFKELVEEHPMCAGCYMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAA---- 90
VM + + H CAGC A R+ +DTI+ GC + +
Sbjct: 3 VMQFPREEYFAPGHRGCAGCGAAIVARLLLKVAG--KDTIITNATGCLEVMTTPYPETSW 60
Query: 91 -VPFIYGNYGDTNAVASGLKRALSI------RFPDKHKDVVVIAGDGGLIDIGFGMTMHS 143
VP+I+ + + A ASG++ A+ +F DK +V+ I GDGG DIGF +
Sbjct: 61 RVPWIHTAFENAAATASGIEAAVKALKRKRGKFADKKINVIAIGGDGGTADIGFQALSGA 120
Query: 144 WFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGKKF-----DKINAVELAKTA 198
R IM DNE Y NTG Q S +P +P G K K + +
Sbjct: 121 MERGHDILYIMYDNEAYMNTGIQRSSSTPFMAATTTSPAGSKIRGEDRPKKDMTMIMAAH 180
Query: 199 GCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVLADARKR- 257
G YVA + P+ + +++A+ GP FI C + P + + R
Sbjct: 181 GIPYVATACISYPEDFMRKVKKALSIE---GPKFIQVLQPCTTGWGYPPEKTIEIGRLAV 237
Query: 258 EKQDFKFYE 266
E F YE
Sbjct: 238 ETGIFPLYE 246
emb|CAB49427.1| (AJ248284) 2-ketoglutarate ferredoxin oxidoreductase, subunit beta
(korB-1) [Pyrococcus abyssi]
Length = 284
Score = 83.9 bits (204), Expect = 2e-15
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 23/223 (10%)
Query: 50 MCAGCYMAYFIRVFYTALP----NPEDTIVIGTAGC-ARLALSQAAVPFIYGNYGDTNAV 104
+C GC + F A+ +P D +V+ GC A +A ++ +G A
Sbjct: 24 LCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIAF 83
Query: 105 ASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTG 164
A+G+K L PDK+ VVVI+GDG L IG +H+ R T I+V+N +YG TG
Sbjct: 84 ATGVKVGL----PDKY--VVVISGDGDLASIGGNHLIHAARRNIDITVILVNNFIYGMTG 137
Query: 165 GQESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILA 224
GQ + +P G P + E AG YVAR + + ++ ++I+RAI
Sbjct: 138 GQVAPTTPFGAITTTTPYRNIEHPLKIAETVAAAGASYVARWTTAHVYQLIESIKRAITT 197
Query: 225 ARHFGPTFIHAYTSCNIEYSIPTREVLADARKREKQDFKFYEW 267
G + + + C +++ R R K+ + W
Sbjct: 198 K---GFSLVEVISQCPVQFG---------RRNRMKEPAEMLRW 228
dbj|BAA30777| (AP000006) 284aa long hypothetical ferredoxin oxidoreductase beta
subunit [Pyrococcus horikoshii]
Length = 284
Score = 83.1 bits (202), Expect = 3e-15
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 14/199 (7%)
Query: 50 MCAGCYMAYFIRVFYTALP----NPEDTIVIGTAGC-ARLALSQAAVPFIYGNYGDTNAV 104
+C GC + F A+ +P D +V+ GC A +A ++ +G A
Sbjct: 24 LCPGCGGGTVLNAFANAIDQLKIDPRDLVVVSGIGCSAWIASPYFLADTLHTTHGRAIAF 83
Query: 105 ASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTG 164
A+G+K L PDK+ VVVI+GDG L IG +H+ R T I+V+N +YG TG
Sbjct: 84 ATGVKVGL----PDKY--VVVISGDGDLASIGGNHLIHAARRNVDITVILVNNFIYGMTG 137
Query: 165 GQESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILA 224
GQ + +P G P + E AG YVAR + + ++ ++I++A++
Sbjct: 138 GQVAPTTPFGAITTTTPYRNIEHPLKVAETVAAAGASYVARWTTAHVYQLIESIKKALMT 197
Query: 225 ARHFGPTFIHAYTSCNIEY 243
G + + + C +++
Sbjct: 198 K---GFSLVEVISQCPVQF 213
sp|O27113|KORB_METTH 2-OXOGLUTARATE SYNTHASE SUBUNIT KORB (2-KETOGLUTARATE
OXIDOREDUCTASE BETA CHAIN) (KOR)
(2-OXOGLUTARATE-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|2622137 (AE000875) 2-oxoglutarate oxidoreductase,
beta subunit [Methanobacterium thermoautotrophicum]
Length = 286
Score = 83.1 bits (202), Expect = 3e-15
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 13/196 (6%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNP----EDTIVIGTAGCARLALSQAAVPFIYGNYGDTNA 103
H CAGC + F+ + ++ ++ GC+ ++ +G +
Sbjct: 19 HIFCAGCGNGIVLNSFFKGMEMAGIDFDNIAMVSGIGCSSRIPGYVNCDSLHTTHGRPIS 78
Query: 104 VASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNT 163
A+GLK + DVVV GDG IG +H R T I ++N +YG T
Sbjct: 79 FATGLKLG------NPSLDVVVFTGDGDAAAIGGNHLIHGARRNIDMTVICINNSIYGMT 132
Query: 164 GGQESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAIL 223
GGQ S P+G AP G D + EL AG YVAR + +P ++A +I++ +
Sbjct: 133 GGQISPTFPEGSYGSTAPYGALEDPFDLAELVTAAGASYVARWTTAHPLQLANSIKKGL- 191
Query: 224 AARHFGPTFIHAYTSC 239
++ G +FI A + C
Sbjct: 192 --KNRGFSFIEAISQC 205
sp|Q56317|PORB_THEMA PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|1197393|emb|CAA59458| (X85171) beta subunit of
pyruvate ferredoxin oxidoreductase [Thermotoga maritima]
>gi|4980502|gb|AAD35112.1|AE001690_6 (AE001690) pyruvate
ferredoxin oxidoreductase, beta subunit [Thermotoga
maritima]
Length = 324
Score = 78.0 bits (189), Expect = 9e-14
Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 20/213 (9%)
Query: 44 LVEEHPMCAGCYMAYFIRVFYTALPNPEDTIVIGTA-GCARLALS-----QAAVPFIYGN 97
+ + H +C GC ++ + V+G A GC ++ S +VP+I+
Sbjct: 19 ITQGHRLCPGCGAPITVKFVMMIARHLGYEPVVGLATGCLEVSTSIYPYTAWSVPYIHNA 78
Query: 98 YGDTNAVASGLKRALSI-----RFP-DKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFT 151
+ + A SG++ A + P DK + GDGG DIG R K
Sbjct: 79 FENVAATMSGVETAYKALKNKGKIPEDKKYAFIAFGGDGGTYDIGLQSLSGMLERGHKVL 138
Query: 152 TIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGKKFD-----KINAVELAKTAGCVYVARI 206
++ DNE Y NTG Q SG +P G AP+GKK K N VE+ VY A
Sbjct: 139 YVLYDNEGYMNTGNQRSGSTPPGSDTTTAPVGKKLPGKVQLKKNIVEIVAAHENVYAATA 198
Query: 207 SPTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
S + P + +A+ GP+F+ ++ C
Sbjct: 199 SLSEPMDFFAKVEKAL---NFDGPSFLAVFSPC 228
dbj|BAA80470.1| (AP000061) 309aa long hypothetical 2-oxoacid--ferredoxin
oxidoreductase , beta chain [Aeropyrum pernix]
Length = 309
Score = 76.5 bits (185), Expect = 3e-13
Identities = 58/203 (28%), Positives = 90/203 (43%), Gaps = 13/203 (6%)
Query: 51 CAGCYMAYFIRVFYTALP----NPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVAS 106
C GC + Y A+ +PE+ V+G GC+ + +G VA+
Sbjct: 17 CPGCGDFGILNSIYRAVSELGIDPENLAVVGGIGCSGRTTYYVKGSNFHALHGRAIPVAT 76
Query: 107 GLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQ 166
G+K A + H +V+V GDG L+ IG G + R T ++ DN VYG T GQ
Sbjct: 77 GVKLA------NPHLNVIVAGGDGDLMGIGGGHFVALGRRNLNITVLLFDNAVYGLTKGQ 130
Query: 167 ESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAAR 226
+ P V+ K + D IN V LA AG ++AR + +++ + I+ A+ R
Sbjct: 131 AAPTLPAWVKTKALSMPNIHDNINPVLLAFAAGYTFIARGYAYHTQQLKELIKTAV---R 187
Query: 227 HFGPTFIHAYTSCNIEYSIPTRE 249
H G + C +I T +
Sbjct: 188 HRGAALVDILQPCPTYNNIMTNK 210
gb|AAD07655.1| (AE000572) ferredoxin oxidoreductase, beta subunit [Helicobacter
pylori 26695]
Length = 273
Score = 76.5 bits (185), Expect = 3e-13
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 71 EDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVASGLKRALSIRFPDKHKDVVVIAGDG 130
+D ++ GC+ S ++ +G A A+G+K A P KH V+V++GDG
Sbjct: 43 DDVCLVSGIGCSGRMSSYVNCNTVHTTHGRAVAYATGIKMAN----PSKH--VIVVSGDG 96
Query: 131 GLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGKKFDKIN 190
IG TMH+ R I+V+N +YG T Q S +P G+ A G ++ +
Sbjct: 97 DGFAIGGNHTMHACRRNIDLNFILVNNFIYGLTNSQTSPTTPNGMWTVTAQWGNIDNQFD 156
Query: 191 AVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSCNI 241
L AG +VAR S +P+++ K ++ H G +F +++C+I
Sbjct: 157 PCALTTAAGASFVARESVLDPQKLEKVLKEGF---SHKGFSFFDVHSNCHI 204
gi|4155085 (AE001486) SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter
pylori J99]
Length = 273
Score = 76.1 bits (184), Expect = 3e-13
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 71 EDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVASGLKRALSIRFPDKHKDVVVIAGDG 130
+D ++ GC+ S ++ +G A A+G+K A P KH V+V++GDG
Sbjct: 43 DDVCLVSGIGCSGRMSSYVNCNTVHTTHGRAVAYATGIKLAN----PSKH--VIVVSGDG 96
Query: 131 GLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGKKFDKIN 190
IG TMH+ R I+V+N +YG T Q S +P G+ A G ++ +
Sbjct: 97 DGFAIGGNHTMHACRRNIDLNFILVNNFIYGLTNSQTSPTTPNGMWTVTAQWGNIDNQFD 156
Query: 191 AVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSCNI 241
L AG +VAR S +P+++ K ++ H G +F +++C+I
Sbjct: 157 PCALTTAAGASFVARESVLDPQKLEKVLKEGF---THKGFSFFDVHSNCHI 204
gi|3323259 (AE001262) pyruvate oxidoreductase [Treponema pallidum]
Length = 1184
Score = 74.5 bits (180), Expect = 1e-12
Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 121 KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA 180
+ V + GDG DIG+G H T +++D EVY NTGGQ S +P G K A
Sbjct: 970 RSVWIFGGDGWAYDIGYGGLDHVLASGRNITVLVMDTEVYSNTGGQMSKATPIGAVAKFA 1029
Query: 181 PLGKKFDKINAVELAKTAGCVYVARIS-PTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
GK+ K + +A + G VYVAR++ N ++ K R A + GP+ I AY+ C
Sbjct: 1030 AAGKEISKKDIGLMAMSYGYVYVARVAMGANMSQVVKAFRE---AESYDGPSLIVAYSHC 1086
pir||S22397 pyruvate synthase (EC 1.2.7.1) - Halobacterium halobium
>gi|43499|emb|CAA45826| (X64521) pyruvate synthase
[Halobacterium halobium]
Length = 312
Score = 73.4 bits (177), Expect = 2e-12
Identities = 62/209 (29%), Positives = 90/209 (42%), Gaps = 14/209 (6%)
Query: 36 MDMGQFKELVEEHPM-CAGCYMAYFIRVFYTALP----NPEDTIVIGTAGCARLALSQAA 90
+D F VE P C GC ++ A+ +PE+ ++ GC+ S
Sbjct: 14 VDRDAFTPGVEPQPTWCPGCGDFGVLKALKGAMAELGKDPEEILLATGIGCSGKLNSY-- 71
Query: 91 VPFIYGNYGDTNAVASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKF 150
+ +YG L A + + + +VV GDG IG MH+
Sbjct: 72 ----FDSYGFHTIHGRSLPVARAAKLANHDLEVVAAGGDGDGYGIGGNHFMHTARENHDI 127
Query: 151 TTIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTN 210
T I+ +NEV+G T GQ S SPKG + K P G I + L+ T+G YVAR + N
Sbjct: 128 TYIVFNNEVFGLTKGQTSPTSPKGHKSKTQPHGSAKSPIRPLSLSMTSGASYVARTAAVN 187
Query: 211 PKRIAKTIRRAILAARHFGPTFIHAYTSC 239
P + AK I + A +H G + T C
Sbjct: 188 PNQ-AKDI--LVEAIQHDGFAHVDFLTQC 213
emb|CAB43934.1| (Y17727) pyruvate ferredoxin oxidoreductase [Clostridium
pasteurianum]
Length = 1181
Score = 72.6 bits (175), Expect = 4e-12
Identities = 46/122 (37%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 121 KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA 180
K V V+ GDG DIGFG H E ++ D E+Y NTGGQ S S G + A
Sbjct: 965 KSVWVLGGDGWAYDIGFGGLDHVLATGENVNVMVFDTEMYSNTGGQASKASNIGEVCQFA 1024
Query: 181 PLGKKFDKINAVELAKTAGCVYVARIS-PTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
GK K + E+A + G VYVA+I+ NP A+T++ A + GP+ I Y C
Sbjct: 1025 AAGKDIGKKSLAEIAMSYGYVYVAQIALGANP---AQTLKAISEAEAYNGPSLIIGYAPC 1081
Query: 240 NI 241
+
Sbjct: 1082 EL 1083
gi|3139140 (AF064035) pyruvate-ferredoxin oxidoreductase 1 [Clostridium
pasteurianum]
Length = 387
Score = 72.6 bits (175), Expect = 4e-12
Identities = 46/122 (37%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 121 KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA 180
K V V+ GDG DIGFG H E ++ D E+Y NTGGQ S S G + A
Sbjct: 171 KSVWVLGGDGWAYDIGFGGLDHVLATGENVNVMVFDTEMYSNTGGQASKASNIGEVCQFA 230
Query: 181 PLGKKFDKINAVELAKTAGCVYVARIS-PTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
GK K + E+A + G VYVA+I+ NP A+T++ A + GP+ I Y C
Sbjct: 231 AAGKDIGKKSLAEIAMSYGYVYVAQIALGANP---AQTLKAISEAEAYNGPSLIIGYAPC 287
Query: 240 NI 241
+
Sbjct: 288 EL 289
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From
Desulfovibrio Africanus >gi|4558092|pdb|1B0P|B Chain B,
Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus >gi|4558221|pdb|2PDA|A Chain
A, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate. >gi|4558222|pdb|2PDA|B Chain B, Crystal
Structure Of The Complex Between Pyruvate- Ferredoxin
Oxidoreductase From Desulfovibrio Africanus And Pyruvate.
Length = 1231
Score = 71.8 bits (173), Expect = 7e-12
Identities = 43/120 (35%), Positives = 58/120 (47%), Gaps = 4/120 (3%)
Query: 121 KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA 180
K V + GDG DIG+G H E ++D EVY NTGGQ S +P G K A
Sbjct: 954 KSVWIFGGDGWAYDIGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFA 1013
Query: 181 PLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHF-GPTFIHAYTSC 239
GK+ K + + T G VYVA +S K + + + A F GP+ + AY +C
Sbjct: 1014 AAGKRTGKKDLARMVMTYGYVYVATVSMGYSK---QQFLKVLKEAESFPGPSLVIAYATC 1070
emb|CAA70873| (Y09702) pyruvate-ferredoxin oxidoreductase [Desulfovibrio africanus]
Length = 1232
Score = 71.8 bits (173), Expect = 7e-12
Identities = 43/120 (35%), Positives = 58/120 (47%), Gaps = 4/120 (3%)
Query: 121 KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA 180
K V + GDG DIG+G H E ++D EVY NTGGQ S +P G K A
Sbjct: 955 KSVWIFGGDGWAYDIGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFA 1014
Query: 181 PLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHF-GPTFIHAYTSC 239
GK+ K + + T G VYVA +S K + + + A F GP+ + AY +C
Sbjct: 1015 AAGKRTGKKDLARMVMTYGYVYVATVSMGYSK---QQFLKVLKEAESFPGPSLVIAYATC 1071
emb|CAA69456| (Y08256) pyruvate-ferredoxin oxidoreductase beta-2 [Sulfolobus
solfataricus]
Length = 338
Score = 71.4 bits (172), Expect = 9e-12
Identities = 60/210 (28%), Positives = 86/210 (40%), Gaps = 23/210 (10%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTAGCARLA-----LSQAAVPFIYGNYGDTN 102
H C GC A +R F P TIVIG GC +A + VP+++ G T
Sbjct: 31 HRTCQGCESALVMR-FLAKAAGPR-TIVIGATGCMYVANTTYYTTSWIVPWVHTQLGGTG 88
Query: 103 AVASGLKRALSI-----RFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDN 157
A A G AL + + +V+ GD G D+G ++ I+ DN
Sbjct: 89 AAALGTAAALRALMRKGKIKQEPINVIAFCGDLGCADMGLSGVSNAMTYDYNLLIILYDN 148
Query: 158 EVYGNTGGQESGMSPKGVQLKMAPLGKK--------FDKINAVELAKTAGCVYVARISPT 209
E NT QE+ M+P G Q + GK+ + + +A Y A ++P
Sbjct: 149 ESSANTDIQETSMTPFGAQTSFSRPGKQRRIMKKRWKKSVVPMIIAGHRNVRYAATMTPA 208
Query: 210 NPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
P IR+A+ GPTFIH+ C
Sbjct: 209 YPLDSMNKIRKALTIG---GPTFIHSLDPC 235
emb|CAB49430.1| (AJ248284) 2-ketoglutarate ferredoxin oxidoreductase, subunit beta
(korB-2) [Pyrococcus abyssi]
Length = 281
Score = 69.1 bits (166), Expect = 4e-11
Identities = 51/197 (25%), Positives = 88/197 (43%), Gaps = 13/197 (6%)
Query: 51 CAGC----YMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVAS 106
C GC + Y +R +P+ + + GC+ ++ +G A A+
Sbjct: 24 CPGCGIGSVLQYTLRAIDDLGLDPDKIVWVSGIGCSSRVPGFVNFDGLHTTHGRALAFAT 83
Query: 107 GLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQ 166
G+K A + ++ GDG IG +H+ R T I+++N YG TGGQ
Sbjct: 84 GIKLA------NPELKIIAFMGDGDAAAIGGNHLIHAIRRNLDVTVILINNFTYGMTGGQ 137
Query: 167 ESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAAR 226
+ +PKG++ AP G+ + + +LA AG YVAR + N + +I++A+
Sbjct: 138 VAPTTPKGLRGTTAPYGQFENPFDIAQLAVAAGANYVARWTVFNYIQGINSIKKALSKE- 196
Query: 227 HFGPTFIHAYTSCNIEY 243
G T + + C I +
Sbjct: 197 --GFTLVEFLSPCPISF 211
gb|AAD55754.1|AF132546_1 (AF132546) pyruvate:ferredoxin oxidoreductase [Spironucleus
barkhanus]
Length = 1182
Score = 68.7 bits (165), Expect = 6e-11
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 123 VVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMAPL 182
+V+I GDG DIG+G H + FT ++VD EVY NTGGQ S +P G + A
Sbjct: 977 IVIIGGDGWAYDIGYGGLDHILASGQDFTILVVDTEVYSNTGGQCSKSTPLGAVARFAAG 1036
Query: 183 GKKFDKINAVELAKTAGCVYVARIS-PTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
GK+ K + +A+ VYVA I+ N K++R A+ GP+ + AY+ C
Sbjct: 1037 GKRNFKKDLGMIAQQYPEVYVASINLNANFNHAVKSMREAV---EWKGPSILIAYSPC 1091
emb|CAB43933.1| (Y17726) pyruvate ferredoxin oxidoreductase [Clostridium
pasteurianum]
Length = 1175
Score = 68.7 bits (165), Expect = 6e-11
Identities = 42/115 (36%), Positives = 58/115 (49%), Gaps = 2/115 (1%)
Query: 125 VIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGK 184
+I GDG DIGFG + ++D E+Y NTGGQ S +P G K A GK
Sbjct: 962 IIGGDGWAYDIGFGGLDQVISTGDDVNIFVLDTEIYSNTGGQSSKSTPTGATAKFAAAGK 1021
Query: 185 KFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
K K + +A + G VYVA+I+ + +TI+ A + GP+ I AY C
Sbjct: 1022 KTRKKDLGMMAMSYGYVYVAQIA--MGANMNQTIKAITEAESYDGPSLIIAYAPC 1074
gi|3172410 (AF064550) putative pyruvate-ferredoxin oxidoreductase [Clostridium
pasteurianum]
Length = 369
Score = 68.7 bits (165), Expect = 6e-11
Identities = 42/115 (36%), Positives = 58/115 (49%), Gaps = 2/115 (1%)
Query: 125 VIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGK 184
+I GDG DIGFG + ++D E+Y NTGGQ S +P G K A GK
Sbjct: 156 IIGGDGWAYDIGFGGLDQVISTGDDVNIFVLDTEIYSNTGGQSSKSTPTGATAKFAAAGK 215
Query: 185 KFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
K K + +A + G VYVA+I+ + +TI+ A + GP+ I AY C
Sbjct: 216 KTRKKDLGMMAMSYGYVYVAQIA--MGANMNQTIKAITEAESYDGPSLIIAYAPC 268
emb|CAB50270.1| (AJ248287) 2-KETOVALERATE OXIDOREDUCTASE SUBUNIT VORB (EC 1.-.-.-)
(VOR) [Pyrococcus abyssi]
Length = 311
Score = 68.3 bits (164), Expect = 8e-11
Identities = 61/222 (27%), Positives = 93/222 (41%), Gaps = 19/222 (8%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGN-----YGDTN 102
H C GC + +R Y TI++ A C+ + + N + T
Sbjct: 23 HTACQGCGASLGLR--YVLKAYGRKTILVIPACCSTIIAGPWPYSALNANLFHTAFETTG 80
Query: 103 AVASGLKRAL-SIRFPDKHKDVVVI---AGDGGLIDIGFGMTMHSWFRREKFTTIMVDNE 158
AV SG++ AL ++ + K +D +++ AGDGG DIG R IM DNE
Sbjct: 81 AVISGIEAALKALGYKVKGEDGIMVVGWAGDGGTADIGLQALSGFLERGHDALYIMYDNE 140
Query: 159 VYGNTGGQESGMSPKGVQLKMAPLGK-----KFDKINAVELAKTAGCVYVARISPTNPKR 213
Y NTG Q S +P G P GK K K +++ Y A S P+
Sbjct: 141 AYMNTGIQRSSSTPYGAWTTNTPGGKRHFLEKRHKKKVIDIVIAHRIPYAATASVAYPED 200
Query: 214 IAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVLADAR 255
+ +++ A + GP+FI + C + PT + + AR
Sbjct: 201 FLRKLKK---AQKIPGPSFIQLFAPCPTGWRAPTDKTIEIAR 239
sp|O58414|VORB_PYRHO KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE BETA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE BETA SUBUNIT)
Length = 311
Score = 67.9 bits (163), Expect = 1e-10
Identities = 61/222 (27%), Positives = 92/222 (40%), Gaps = 19/222 (8%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGN-----YGDTN 102
H C GC + +R Y TIV+ A C+ + + N + T
Sbjct: 23 HTACQGCGASLGLR--YVLKAYGRKTIVVIPACCSTIIAGPWPYSALNANLFHTAFATTG 80
Query: 103 AVASGLKRAL-SIRFPDKHKDVVVI---AGDGGLIDIGFGMTMHSWFRREKFTTIMVDNE 158
AV SG++ L ++ + K +D +++ AGDGG DIG R IM DNE
Sbjct: 81 AVISGIEAGLKALGYKVKGEDGIMVVGWAGDGGTADIGLQALSGFIERGHDAVYIMYDNE 140
Query: 159 VYGNTGGQESGMSPKGVQLKMAPLGK-----KFDKINAVELAKTAGCVYVARISPTNPKR 213
Y NTG Q S +P G P GK K K +++ Y A S P+
Sbjct: 141 AYMNTGIQRSSSTPYGAWTTNTPGGKRHLLEKRHKKKVIDIVIAHRIPYAATASVAYPED 200
Query: 214 IAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVLADAR 255
+ +++ A + GP+FI + C + PT + + AR
Sbjct: 201 FIRKLKK---AQKIPGPSFIQLFAPCPTGWRAPTDKSIEIAR 239
emb|CAB60188.1| (AL132824) putative oxidoreductase beta-subunit [Streptomyces
coelicolor A3(2)]
Length = 350
Score = 67.9 bits (163), Expect = 1e-10
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 14/218 (6%)
Query: 46 EEHPMCAGCYMAYFIRVFYTALPN----PEDTIVIGTAGCARLALSQAAVPFIYGNYGDT 101
+E C GC + +P E+ + + GC+ ++ +G
Sbjct: 27 QEVRWCPGCGDYAILAAVQGFMPQLGLARENIVFVSGIGCSSRFPYYMNTYGMHSIHGRA 86
Query: 102 NAVASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYG 161
A+A+GL + + V V+ GDG + IG +H+ R ++ +N +YG
Sbjct: 87 PAIATGLATSR------RDLSVWVVTGDGDALSIGGNHLIHALRRNVNLKILLFNNRIYG 140
Query: 162 NTGGQESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRA 221
T GQ S S G K P+G N + LA A +VAR ++ K + + +R+
Sbjct: 141 LTKGQYSPTSEVGKITKSTPMGSLDAPFNPIFLALGAEASFVARTVDSDRKHLTEVLRQ- 199
Query: 222 ILAARHFGPTFIHAYTSCNIEYSIPTREVLADARKREK 259
AA H G I Y +CNI ++ + L D ++ E+
Sbjct: 200 --AAEHPGTALIEIYQNCNI-FNDGAFDALKDKQQAEE 234
dbj|BAA29772| (AP000003) 314aa long hypothetical ferredoxin oxidoreductase beta
subunit [Pyrococcus horikoshii]
Length = 314
Score = 67.9 bits (163), Expect = 1e-10
Identities = 61/222 (27%), Positives = 92/222 (40%), Gaps = 19/222 (8%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGN-----YGDTN 102
H C GC + +R Y TIV+ A C+ + + N + T
Sbjct: 26 HTACQGCGASLGLR--YVLKAYGRKTIVVIPACCSTIIAGPWPYSALNANLFHTAFATTG 83
Query: 103 AVASGLKRAL-SIRFPDKHKDVVVI---AGDGGLIDIGFGMTMHSWFRREKFTTIMVDNE 158
AV SG++ L ++ + K +D +++ AGDGG DIG R IM DNE
Sbjct: 84 AVISGIEAGLKALGYKVKGEDGIMVVGWAGDGGTADIGLQALSGFIERGHDAVYIMYDNE 143
Query: 159 VYGNTGGQESGMSPKGVQLKMAPLGK-----KFDKINAVELAKTAGCVYVARISPTNPKR 213
Y NTG Q S +P G P GK K K +++ Y A S P+
Sbjct: 144 AYMNTGIQRSSSTPYGAWTTNTPGGKRHLLEKRHKKKVIDIVIAHRIPYAATASVAYPED 203
Query: 214 IAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVLADAR 255
+ +++ A + GP+FI + C + PT + + AR
Sbjct: 204 FIRKLKK---AQKIPGPSFIQLFAPCPTGWRAPTDKSIEIAR 242
emb|CAA75642| (Y15464) ferredoxin oxidoreductase-like (beta subunit) [Thermus
thermophilus]
Length = 305
Score = 67.9 bits (163), Expect = 1e-10
Identities = 58/206 (28%), Positives = 83/206 (40%), Gaps = 13/206 (6%)
Query: 51 CAGCYMAYFIRVFYTAL----PNPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVAS 106
C GC + AL +P T V GC+ V ++ +G VA
Sbjct: 18 CPGCGDYGILSALQMALFELKRDPSQTAVFSGIGCSAKTPHYLNVYGVHTLHGRVLPVAQ 77
Query: 107 GLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQ 166
G K A + H VV + GDG + IG G + + R I+ DNEVYG T GQ
Sbjct: 78 GAKLA------NPHLTVVAVGGDGDGLGIGAGHFVAAGRRNVDMLYILYDNEVYGLTKGQ 131
Query: 167 ESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAAR 226
G + K P ++N + LA AG ++AR + K + + I+ I
Sbjct: 132 AGPTLGLGEKTKSLPKPNPQSRLNPLLLAFAAGYTWIARGYAYDVKGLKELIKEGI---E 188
Query: 227 HFGPTFIHAYTSCNIEYSIPTREVLA 252
H G F+H C + T+E A
Sbjct: 189 HRGLAFLHVLQPCPTYNDLHTKEWFA 214
sp|O58417|PORB_PYRHO PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
Length = 331
Score = 67.5 bits (162), Expect = 1e-10
Identities = 61/226 (26%), Positives = 93/226 (40%), Gaps = 23/226 (10%)
Query: 48 HPMCAGCYMAYFIRVFYTALP--------NPEDTIVIGTAGCARLA-----LSQAAVPFI 94
H CAGC A +++ A +P + GC + + VP+I
Sbjct: 18 HAACAGCGCAIALKLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWI 77
Query: 95 YGNYGDTNAVASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIM 154
+ + + A ASG++ A + K K ++ I GDGG DIG R +M
Sbjct: 78 HVAFENAAAAASGVEAAWK-KLGIKGK-ILAIGGDGGTADIGLQALSGMLERGHNVVYLM 135
Query: 155 VDNEVYGNTGGQESGMSPKGVQLKMAP-----LGKKFDKINAVELAKTAGCVYVARISPT 209
DNE Y NTG Q S +P G +P +G+ K +A Y A S
Sbjct: 136 YDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHQIPYAATASIG 195
Query: 210 NPKRIAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVLADAR 255
NP + K +++ AA+ GP FI + +C + P + + AR
Sbjct: 196 NPFDLVKKVKK---AAKVDGPAFIQVHCTCPTGWRTPLEKGVEIAR 238
emb|CAB50267.1| (AJ248287) PYRUVATE SYNTHASE SUBUNIT PORB (EC 1.2.7.1) (PYRUVATE
OXIDOREDUCTASE BETA CHAIN) (POR) [Pyrococcus abyssi]
Length = 334
Score = 67.5 bits (162), Expect = 1e-10
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 23/226 (10%)
Query: 48 HPMCAGCYMAYFIRVFYTALP--------NPEDTIVIGTAGCARLA-----LSQAAVPFI 94
H CAGC A +R+ A +P + GC + + VP++
Sbjct: 21 HAACAGCGCATALRLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWV 80
Query: 95 YGNYGDTNAVASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIM 154
+ + + A ASG++ A + ++ I GDGG DIG R +M
Sbjct: 81 HVAFENAAAAASGIEAAWKKK--GIKGKILAIGGDGGTADIGLQALSGMLERGHNVVYLM 138
Query: 155 VDNEVYGNTGGQESGMSPKGVQLKMAP-----LGKKFDKINAVELAKTAGCVYVARISPT 209
DNE Y NTG Q S +P G +P +G+ K +A YVA S
Sbjct: 139 YDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHMIPYVATASIG 198
Query: 210 NPKRIAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVLADAR 255
NP K +++ AA+ GP F+ + +C + P + + AR
Sbjct: 199 NPFDFVKKVKK---AAKVDGPAFVQVHCTCPTGWRTPLEKGIEIAR 241
dbj|BAA29776| (AP000003) 334aa long hypothetical ferredoxin oxidoreductase beta
subunit [Pyrococcus horikoshii]
Length = 334
Score = 67.5 bits (162), Expect = 1e-10
Identities = 61/226 (26%), Positives = 93/226 (40%), Gaps = 23/226 (10%)
Query: 48 HPMCAGCYMAYFIRVFYTALP--------NPEDTIVIGTAGCARLA-----LSQAAVPFI 94
H CAGC A +++ A +P + GC + + VP+I
Sbjct: 21 HAACAGCGCAIALKLATKAFSEAMEEKYGDPNAFAIAQATGCMEVVSAVFPYTAWKVPWI 80
Query: 95 YGNYGDTNAVASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIM 154
+ + + A ASG++ A + K K ++ I GDGG DIG R +M
Sbjct: 81 HVAFENAAAAASGVEAAWK-KLGIKGK-ILAIGGDGGTADIGLQALSGMLERGHNVVYLM 138
Query: 155 VDNEVYGNTGGQESGMSPKGVQLKMAP-----LGKKFDKINAVELAKTAGCVYVARISPT 209
DNE Y NTG Q S +P G +P +G+ K +A Y A S
Sbjct: 139 YDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSIGEDRPKKWVALIAAAHQIPYAATASIG 198
Query: 210 NPKRIAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVLADAR 255
NP + K +++ AA+ GP FI + +C + P + + AR
Sbjct: 199 NPFDLVKKVKK---AAKVDGPAFIQVHCTCPTGWRTPLEKGVEIAR 241
sp|Q51802|VORB_PYRFU KETOISOVALERATE OXIDOREDUCTASE SUBUNIT VORB (VOR) (2-OXOISOVALERATE
OXIDOREDUCTASE BETA CHAIN) (2-OXOISOVALERATE-FERREDOXIN
OXIDOREDUCTASE BETA SUBUNIT) >gi|1197361|emb|CAA59503|
(X85250) 2-ketovalerate ferredoxin oxidoreductase beta-2
[Pyrococcus furiosus]
Length = 311
Score = 67.5 bits (162), Expect = 1e-10
Identities = 61/222 (27%), Positives = 94/222 (41%), Gaps = 19/222 (8%)
Query: 48 HPMCAGCYMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGN-----YGDTN 102
H C GC + +R Y + TI++ A C+ + I N + T
Sbjct: 23 HTACQGCGASLGLR--YVLKAYGKKTILVIPACCSTIIAGPWPYSAIDANLFHTAFETTG 80
Query: 103 AVASGLKRAL-SIRFPDKHKDVVVI---AGDGGLIDIGFGMTMHSWFRREKFTTIMVDNE 158
AV SG++ AL ++ + K +D +++ AGDGG DIG R IM DNE
Sbjct: 81 AVISGIEAALKAMGYKVKGEDGIMVVGWAGDGGTADIGLQALSGFLERGHDAVYIMYDNE 140
Query: 159 VYGNTGGQESGMSPKGVQLKMAPLGK-----KFDKINAVELAKTAGCVYVARISPTNPKR 213
Y NTG Q S +P G P G+ K K +++ Y A S P+
Sbjct: 141 AYMNTGIQRSSSTPYGAWTTNTPGGRRHFLEKRHKKKVIDIVIAHRIPYAATASIAYPED 200
Query: 214 IAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVLADAR 255
+ +++ A + GP+FI + C + PT + + AR
Sbjct: 201 FIRKLKK---AQKISGPSFIQLFAPCPTGWRAPTDKSIEIAR 239
dbj|BAA30773| (AP000006) 281aa long hypothetical ferredoxin oxidoreductase beta
subunit [Pyrococcus horikoshii]
Length = 281
Score = 67.1 bits (161), Expect = 2e-10
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 10/176 (5%)
Query: 51 CAGCYMAYFIRVFYTALP----NPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVAS 106
C GC + ++ A+ +P+ + + GC+ ++ +G A A+
Sbjct: 24 CPGCGIGSVLQFTLRAIDELGLDPDKIVWVSGIGCSSRVPGFVNFDGLHTTHGRALAFAT 83
Query: 107 GLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQ 166
G+K A + ++ GDG IG +H+ R T I+++N YG TGGQ
Sbjct: 84 GIKLA------NPELKIIAFMGDGDAAAIGGNHLIHAIRRNLDVTVILINNFTYGMTGGQ 137
Query: 167 ESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAI 222
+ +PKG++ AP G+ + + +LA AG YVAR + N + +I++A+
Sbjct: 138 VAPTTPKGLRGTTAPYGQFENPFDIAQLAVAAGANYVARWTVFNYIQGINSIKKAL 193
sp|Q51805|PORB_PYRFU PYRUVATE SYNTHASE SUBUNIT PORB (PYRUVATE OXIDOREDUCTASE BETA CHAIN)
(POR) (PYRUVIC-FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT)
>gi|1197364|emb|CAA59506| (X85250) pyruvate ferredoxin
oxidoreductase beta-2 [Pyrococcus furiosus]
Length = 331
Score = 66.7 bits (160), Expect = 2e-10
Identities = 65/227 (28%), Positives = 94/227 (40%), Gaps = 25/227 (11%)
Query: 48 HPMCAGCYMAYFIRVFYTALP--------NPEDTIVIGTAGCARLA-----LSQAAVPFI 94
H CAGC A +R+ AL +P + GC + + P+I
Sbjct: 18 HAACAGCGCATALRLATKALSEAMEEKYGDPNAFAIAHATGCMEVVSAVFPYTAWKAPWI 77
Query: 95 YGNYGDTNAVASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIM 154
+ + + AVASG++ A + K K ++ I GDGG DIG R +M
Sbjct: 78 HVAFENAAAVASGIEAAWK-KLGRKGK-ILAIGGDGGTADIGLQALSGMLERWHNVLYLM 135
Query: 155 VDNEVYGNTGGQESGMSPKGVQLKMAPLGK------KFDKINAVELAKTAGCVYVARISP 208
DNE Y NTG Q S +P G +P GK K K A+ +A YVA S
Sbjct: 136 YDNEAYMNTGIQRSSSTPYGAWTTTSPPGKYSVGEDKPKKWVAL-IAAAHQIPYVATASI 194
Query: 209 TNPKRIAKTIRRAILAARHFGPTFIHAYTSCNIEYSIPTREVLADAR 255
NP + I++ A + GP F+ +C + P + + AR
Sbjct: 195 GNPLDFVRKIKK---AGKIDGPAFVQVLCTCPTGWRSPLEKGVEIAR 238
sp|Q53046|NIFJ_RHORU PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi|628896|pir||S41961 pyruvate
oxidoreductase - Rhodospirillum rubrum
>gi|453436|emb|CAA54651| (X77515) pyruvate oxidoreductase
[Rhodospirillum rubrum]
Length = 1191
Score = 66.7 bits (160), Expect = 2e-10
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 121 KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA 180
K V ++ GDG DIG+ H +++D EVY NTGGQ+S +P G K +
Sbjct: 969 KVVWIVGGDGWAYDIGYAGLDHVISSGRNVNILVMDTEVYSNTGGQQSKSTPIGASAKFS 1028
Query: 181 PLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
GK K + ++A G VYVA I+ +T+R A + GP+ I AY+ C
Sbjct: 1029 VAGKALPKKDLGQIAMANGHVYVASIAFGASDN--QTLRALSEAVSYEGPSLIIAYSHC 1085
gi|2648477 (AE000961) 2-ketoisovalerate ferredoxin oxidoreductase, subunit
beta (vorB) [Archaeoglobus fulgidus]
Length = 278
Score = 66.3 bits (159), Expect = 3e-10
Identities = 60/213 (28%), Positives = 94/213 (43%), Gaps = 19/213 (8%)
Query: 51 CAGCYMAYFIRVFYTALPNPEDTIVIGTAGCARLAL-----SQAAVPFIYGNYGDTNAVA 105
C GC ++ +R L E+ +++ AGC+ + S P ++ + T++VA
Sbjct: 9 CQGCPISMAMR----CLDEIENPVLVIPAGCSTVIAGLHPKSAMKCPVVHVPFASTHSVA 64
Query: 106 SGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGG 165
GL A + VV GDG DIGF S R++ T++VDNE Y NTG
Sbjct: 65 CGLSEAY--KKLGVGATVVAWMGDGAA-DIGFAALSASATRKDDILTVVVDNEAYMNTGT 121
Query: 166 QESGMSPKGVQLKMAPLGKKFDKIN--AVELAKTAGCVYVARISPTNPKRIAKTIRRAIL 223
Q S + + +P GK D+ N V LA V A + + R R+ +
Sbjct: 122 QSSLSTFWKAKTTTSPKGKTEDRRNLALVMLAHKVDYVATASVGYIHDLR-----RKFRI 176
Query: 224 AARHFGPTFIHAYTSCNIEYSIPTREVLADARK 256
A + G F+H + C + P+ + + ARK
Sbjct: 177 AGKKDGFRFLHVHAPCPPGWRFPSEKTVEVARK 209
dbj|BAA81139.1| (AP000063) 318aa long hypothetical 2-oxoacid--ferredoxin
oxidoreductase beta chain [Aeropyrum pernix]
Length = 318
Score = 66.0 bits (158), Expect = 4e-10
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 13/215 (6%)
Query: 51 CAGC----YMAYFIRVFYTALPNPEDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVAS 106
C GC +A + F +P T+V+ GC+ V ++ +G A A+
Sbjct: 18 CPGCGDFGILAAMQKAFAELNLDPAQTVVVSGIGCSSKTPHFINVNGVHTIHGRGIAFAT 77
Query: 107 GLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQ 166
G+K A + V+V GDG L+ IG + R T ++ +N+VYG T GQ
Sbjct: 78 GIKLA------NPQLKVIVNGGDGDLLGIGVAHFVALGRRNLDVTVLIHNNKVYGLTKGQ 131
Query: 167 ESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAAR 226
S +G ++K P+ D +N + LA +G +VAR + + ++ AI
Sbjct: 132 ASPTLRRGEKVKSLPVPNLQDAVNPIALAIASGYTFVARAYSLWVDHLKEILKAAI---N 188
Query: 227 HFGPTFIHAYTSCNIEYSIPTREVLADARKREKQD 261
H G I C I T E D + + D
Sbjct: 189 HKGSAVIDVLQPCVTYNDIYTAEFYKDRLYKLEDD 223
pir||QQKBFP pyruvate (flavodoxin) dehydrogenase (EC 1.2.99.-) - Klebsiella
pneumoniae >gi|43863|emb|CAA31501| (X13109)
pyruvate-flavodoxin oxidoreductase [Klebsiella
pneumoniae]
Length = 1171
Score = 66.0 bits (158), Expect = 4e-10
Identities = 41/115 (35%), Positives = 57/115 (48%), Gaps = 2/115 (1%)
Query: 125 VIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGK 184
+ GDG DIGFG H E ++ D EVY NTGGQ S +P K A GK
Sbjct: 960 IFGGDGWAYDIGFGGLDHVLASGEDVNILVFDTEVYSNTGGQSSKSTPVAAIAKFAAQGK 1019
Query: 185 KFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
+ K + +A + G VYVA+++ K +T+R A GP+ + AY +C
Sbjct: 1020 RTRKKDLGMMAMSYGNVYVAQVAMGADK--DQTLRAIAEAEAWPGPSLVIAYAAC 1072
sp|P03833|NIFJ_KLEPN PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi|43821|emb|CAA31665| (X13303)
nifJ protein (AA 1-1171) [Klebsiella pneumoniae]
Length = 1171
Score = 66.0 bits (158), Expect = 4e-10
Identities = 41/115 (35%), Positives = 57/115 (48%), Gaps = 2/115 (1%)
Query: 125 VIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGK 184
+ GDG DIGFG H E ++ D EVY NTGGQ S +P K A GK
Sbjct: 960 IFGGDGWAYDIGFGGLDHVLASGEDVNILVFDTEVYSNTGGQSSKSTPVAAIAKFAAQGK 1019
Query: 185 KFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
+ K + +A + G VYVA+++ K +T+R A GP+ + AY +C
Sbjct: 1020 RTRKKDLGMMAMSYGNVYVAQVAMGADK--DQTLRAIAEAEAWPGPSLVIAYAAC 1072
sp|P19543|NIFJ_ENTAG PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi|469077|emb|CAA55302.1|
(X78558) nifJ [Pantoea agglomerans]
>gi|1480137|emb|CAA68011| (X99694) nifJ [Enterobacter
agglomerans]
Length = 1173
Score = 65.6 bits (157), Expect = 5e-10
Identities = 47/147 (31%), Positives = 71/147 (47%), Gaps = 10/147 (6%)
Query: 99 GDTNAVASGLKRALSIRFPDKHKDVV------VIAGDGGLIDIGFGMTMHSWFRREKFTT 152
GDT+ A+ +++ + H+D + + GDG DIGFG H +
Sbjct: 933 GDTSGFANAREKSRTPTVSMPHRDYLANGSHWIFGGDGWAYDIGFGGLDHVLASGKDVNV 992
Query: 153 IMVDNEVYGNTGGQESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPK 212
++ D EVY NTGGQ S +P + A KK K + +A + G VYVA+I+ K
Sbjct: 993 LVFDTEVYSNTGGQSSKSTPAAAIAQFA--CKKTRKKDLGMMAMSYGYVYVAQIAMGADK 1050
Query: 213 RIAKTIRRAILAARHFGPTFIHAYTSC 239
+T+R A + GP+ I AY +C
Sbjct: 1051 N--QTLRAIAEAEAYPGPSLIIAYAAC 1075
gi|2935180 (AF021094) OorB subunit of 2-oxoglutarate:acceptor oxidoreductase
[Helicobacter pylori]
Length = 274
Score = 64.4 bits (154), Expect = 1e-09
Identities = 48/172 (27%), Positives = 81/172 (46%), Gaps = 10/172 (5%)
Query: 71 EDTIVIGTAGCARLALSQAAVPFIYGNYGDTNAVASGLKRALSIRFPDKHKDVVVIAGDG 130
+D ++ GC+ S ++ +G A A+G+K A P KH V+V++GDG
Sbjct: 43 DDVCLVSGIGCSGRMSSYVNCNTVHTTHGRAVAYATGIKMAN----PSKH--VIVVSGDG 96
Query: 131 GLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMAPLGKKFDKIN 190
IG TMH+ R I+V+N +YG T + P G+ A G ++ +
Sbjct: 97 DGFAIGGNHTMHACRRNIDLNFILVNNFIYGLTTPKLRPPRPNGMWSVTAQWGNIDNQFD 156
Query: 191 AVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFI-HAYTSCNI 241
L AG +VAR S +P+++ K ++ H G +F +++C+I
Sbjct: 157 PCALTTAAGASFVARESVLDPQKLEKVLKEGF---SHKGFSFFDDVHSNCHI 205
sp|Q06879|NIFJ_ANASP PYRUVATE-FLAVODOXIN OXIDOREDUCTASE >gi|2126544|pir||I39613 nitrogen
fixation protein - Anabaena sp >gi|289139 (L14925)
nitrogen fixation protein [Anabaena sp.]
Length = 1197
Score = 64.4 bits (154), Expect = 1e-09
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 121 KDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYGNTGGQESGMSPKGVQLKMA 180
K V +I GDG DI FG H +++D EVY NTGGQ S +PK K A
Sbjct: 987 KSVWIIGGDGWAYDIDFGGIDHVIASGRNVNILVMDIEVYSNTGGQSSKATPKAAVAKFA 1046
Query: 181 PLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRAILAARHFGPTFIHAYTSC 239
GK K + +A G VYVA ++ + +T++ + A GP+ I AY+ C
Sbjct: 1047 ASGKPAQKKDMGLMAMNYGNVYVASVA--LGAKDDQTLKAFLEAEAFDGPSIIIAYSHC 1103
emb|CAA16031| (AL021246) hypothetical protein Rv2454c [Mycobacterium
tuberculosis]
Length = 373
Score = 64.0 bits (153), Expect = 1e-09
Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 13/200 (6%)
Query: 46 EEHPMCAGCYMAYFIRVFYTALPN----PEDTIVIGTAGCARLALSQAAVPFIYGNYGDT 101
+E C GC + LP E+ + I GC+ + +G
Sbjct: 51 QEVRWCPGCGDYVILNTIRNFLPELGLRRENIVFISGIGCSSRFPYYLETYGFHSIHGRA 110
Query: 102 NAVASGLKRALSIRFPDKHKDVVVIAGDGGLIDIGFGMTMHSWFRREKFTTIMVDNEVYG 161
A+A+GL A + V V+ GDG + IG +H+ R T ++ +N +YG
Sbjct: 111 PAIATGLALAR------EDLSVWVVTGDGDALSIGGNHLIHALRRNINVTILLFNNRIYG 164
Query: 162 NTGGQESGMSPKGVQLKMAPLGKKFDKINAVELAKTAGCVYVARISPTNPKRIAKTIRRA 221
T GQ S S G K P+G N V LA A +V R ++ + + +R
Sbjct: 165 LTKGQYSPTSEVGKVTKSTPMGSLDHPFNPVSLALGAEATFVGRALDSDRNGLTEVLR-- 222
Query: 222 ILAARHFGPTFIHAYTSCNI 241
AA+H G + C I
Sbjct: 223 -AAAQHRGAALVEILQDCPI 241
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 12, 2000 2:26 PM
Number of letters in database: 136,724,657
Number of sequences in database: 444,417
Lambda K H
0.323 0.140 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76237001
Number of Sequences: 444417
Number of extensions: 3179486
Number of successful extensions: 5603
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5489
Number of HSP's gapped (non-prelim): 91
length of query: 289
length of database: 136,724,657
effective HSP length: 51
effective length of query: 238
effective length of database: 114,059,390
effective search space: 27146134820
effective search space used: 27146134820
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 70 (31.7 bits)
