;; pepper version 3.20 run on mucomt.all ;; ;; First non-blank line of input file: ;; 31,831 nt, circular mapping; assembly provided by Jeremy Schmutz (rt-org_alan@cuba.jgi-psf.org) ;; ;; Genetic code used: 1 ;; ;; ;; Protein(s) reported: ;; atp6 atp8 atp9 cob cox1 ;; cox2 cox3 nad1 nad2 nad3 ;; nad4 nad4L nad5 nad6 orf120 ;; ;; The switch '-m' was not used. ;; >Mucor circinelloides atp6 ; 259 aa on 'Mucor' MSTLATTFLVNNPLEQFEINDFVFILAPIFGFTKLSLTNIGFYLIMVVAITIGMNVLSRN NGYVIPSRWAIHSESVYGSILNLVREQIGPKNEVYVPFIFALFNFVLISNLVGLVPYSFT TTSHLVLTMSLATAILIGVTIIGFQRHGLGFFAFFIPAGTPLALVFLLVAIELISYLARA VSLGVRLGANMIAGHSLLKIISTFTWKMVVAGPVLLLVSLLPLLFLTALAGLEFGIAILQ AYVFTILTCSYLKDAIDLH* >Mucor circinelloides atp8 ; 48 aa on 'Mucor' MPQLVPFYFLNQVSFAFLLLMVLLYVASKYILPNFMLVQSARMFLASK* >Mucor circinelloides atp9 ; 74 aa on 'Mucor' MVAAAKILGAGLATIGLAGAGVGVGLVFAALINSTSRNPSLRPQLFSYTILGFALTEAIG LFALMMAFLLLYAA* >Mucor circinelloides cob ; 391 aa on 'Mucor' MKLLKSHSLLSLANSYVIDSPQPSNLNYAWNFGSLLALCLVIQIVTGVTLAMHYTPNIDL AFISVEHIMRDVNYGWMIRYLHANTASFFFLFVYLHIGRGLYYGSYKAPRALVWSIGVII LILMMATAFLGYVLPWGQMSLWGATVITNLLSAIPWIGKDLVEFIWGGFSVDNATLNRFF SLHYLLPFILAALSLMHLIAKEENGSNNPLGITANTDMVYLHPYYVFKDLVTIFLFFLVL ALFLFYAPNKLGHPDNYIPANPMQTPASIVPEWYLLPFYAILRSIPDKLGGVIAMFGSLL ILLAMPVLDTSRVRGSAFRPLMKLAFWLLVVDFLILLWCGGQHVEEPFITLGQFATAFYF GWFLIIVPAVGIIENTLMDLAADENKTASTK* >Mucor circinelloides cox1 ; 528 aa on 'Mucor' MVRWLFSTNAKDIGTLYIIFSIFAGMIGTAFSMLIRLELAGPGIQYLHGDHQLYNVIVTA HAFVMIFFLVMPAMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPSLILLVASAFVEN GAGTGWTVYPPLSGIASHSGGSVDLAIFSLHLSGISSMLGAMNFITTIINMRAPGMSFHK MPLFVWAVLITAVLLLLSLPVLAGGITMLLTDRNFNTSFYEPAGGGDPLLYQHLFWFFGH PEVYILIIPGFGIVSHVVSTFCGKPIFGYLGMVYAMLSIGVLGFIVWSHHMYTVGLDVDT RAYFTAATMIIAVPTGIKIFSWLATLYGGSIRFTTPMLFALGFLALFTLGGLTGVMLANA SMDVALHDTYYVVAHFHYVLSMGAVFALFAAFYYWIGKITGKTYNELLGQIHFWSLFIGV NLTFFPQHMLGLAGMPRRIPDYPDAYSGWNLVSSFGSIISIVASLVFLYALYDLLARQEY NLANNYWYVPQFFSSSRAIGATSTANTLEWSLTSPPSFHTVNSLPTQS* >Mucor circinelloides cox2 ; 255 aa on 'Mucor' MLNMLKSLNIISPVWNDAPEPWQWTFQDGASPSFEGIVELHDQIMFYLVVILFGVAWMLT SIIVNFGSNKNQIVYKYHNHGTLIELIWTITPAFVLIAIAFPSFKLLYLMDEVIDPAMTI KALGHQWYWSYEYSDFVNEDGESIEFDSYLVPTDDLEDGQLRLLEVDNRVVVPVGTHIRF IVTGADVIHSFAVPSLGLKIDAIPGRLNQTSVLVEREGVYYGQCSEICGVHHGFMPIAVE AVSLEKYLAWLNEQA* >Mucor circinelloides cox3 ; 270 aa on 'Mucor' MTTKFMNRSVQAHPFHLVEASPWPIAVSFSLLVVTLSGVMTFQGYSNGLFLLTLGFISLV STMTLWFKDISREGTFQGHHTFAVQKGLSLGFVLFVISEIFFFISIFWAFFHSSLAPTVE LGAHWPPAGIETLNPWEVPLLNTVILLSSGATVTYAHHSLIQGNRAGVIYGLIATVALAA VFTGFQAFEYYNAPFTFSDGVYGSTFYMATGFHGIHVIVGTIFLTVGLFRVLSYHLTDHH HLGFEQAILYWHFVDVVWLFLFISVYWWGG* >Mucor circinelloides nad1 ; 331 aa on 'Mucor' MYYNLLMLLSFIEVLIVIVPLLLSVAFMTIAERKAMGSMQRRLGPNRVGYYGLLQPFADA LKLFVKESVIPAHSNKALFLLAPVISLITSLLAWGVVPFGAGLTLSDLSLGILYLLAVGS LGVYGVIFAGWSANSKYAFLGGLRSTAQMVSYEVVMGLIILTVVLLVGSLNLTNIIQAQI NVWYIIPLLPLSLMFLISAIAETNRAPFDLPEAESELVAGFFTEHSSVPFVMFFLAEYAS IILMSTFVVMLFLGGYLIPFVSFENPTFFSFEGLALGLKTSLILFIYIWVRASFPRLRYD QLMSFTWTGMLPLTLGFIILVPCILMAFEIA* >Mucor circinelloides nad2 ; 502 aa on 'Mucor' MVLFGVLTMILAIALFSLRIPAIYFNRITIILLLFSALLSYNSLYIDLIGSGVGVFGGLF QVTTITQSIDVFIYLVGALVLLLSARAGGAQTLPSNGSNSTLVNKSKGLSVLAEYPLIAL FSVLGMSSLISSSDLVSMFLSIELQSFAVYILATIYRESESATAAGLKYFLLGSLSSALI LLGSSLLYGFTGLTSFEGLYMLCSTTTANTAIEISVLLIMVGLLFKVSAAPFHNWAPDVY DGVPTVVTTWLTTMPKIAFLVFILEFQGFTQLANWSSWTYLLLISSLLSLLVGTIGGLAQ YRIKRLLTYSTISHVGFLLLALAINNEESVESFLFYLIQYTLTNINVFFILVAFGYLLQT KGLSVYSPIQYINQLKGQFKANPLLGLSLAICLFSMAGIPPLVGFFGKQMVLYAATHNGN FFLAFVAILVSVVSAAYYLRVIKVIHFDPLNVTETVQTNKGELATSSSLVIATITLLLIF FIINPTPLLNSVHLITLNLFYW* >Mucor circinelloides nad3 ; 125 aa on 'Mucor' MNTLTLFILFIPVLTLVLLVVNQLLAVNKPYSEKVSPYECGFTPLGDARQKFSVQFYLVA ILFIVFDLEVLFLFPFAVSLYEISTMGFWIVILFLIILTIGFVYEWSKGALKFTKDPTTS KINLN* >Mucor circinelloides nad4 ; 475 aa on 'Mucor' MILSLLVTPILGVIGVILSGENTSLQKKVALTSSLLTFVLSLVLWAGFDSNYNGFQFVSS FPTVTTQEVVGVDGISLFFVLLTTLIIPICILASWESIKTGIKYFLIAFLVLETLLIAVF VVLDLLLFYICFESVLIPMFLIIGIWGARERKIHAAYQFFLYTLLGSLFMLLAILVIYFE VGSTDYQVLAVADISETRQRILWLGFFLSFAVKVPMIPFHIWLPEAHVEASLAGSIILAG VLLKLAGYGFLRYSIAILPDASVFFTPLVYSLAVISIIYSSFTTLRQVDLKKIIAYSSVG HMNITLLGLFSNTIQGIEGSLILMLAHGVVSPALFICVVILYDRYHTRLLKYYRGLTQHM PVWSIMFFLFTLGNIAVPLSANFVGEFMTFTGAFQQNPVLTVLGGLGMILSAAYGIWLYN RTAFGAQSRYLAPMGDINRREFMTLVPLLFLMFVMGVFPNLFLEPMHLAVSNLLI* >Mucor circinelloides nad4L ; 88 aa on 'Mucor' MNLSMVLFLIGILGFILNRKNIILMLISIEIMLLAVTLLIILSSFSFDDILGQTYGIYII AIAGAESAIGLGILVAYYRLRGSIAIKA* >Mucor circinelloides nad5 ; 657 aa on 'Mucor' MYLAIITLPLLSATVAGFLGRKVGKTGSHLITCSSLVLTALFALVAFYEVGLCQSPVSIK LMSWIDSEFLLVSWGFIYDSLTVSMLLPVLIVSALVHIYSTNYMSEDPHNQRFFAYLSMF TFFMLMLVTGDNYLVMFIGWEGVGISSYLLINFWFTRLQANKAAIKALVMNRVGDWGFSI GLWAIFWTFGNLDFSTVFSLAPFINEELITIISICLLIAAMGKSAQIGLHTWLPDAMEGP TPVSALIHAATMVTAGVYLLLRSSPILEFGSTALILITWVGALTAFFAATTGLLQNDLKR VIAYSTCSQLGLLFLICGLSQYNVALFHLVNHAWFKALLFLSAGSVIHAMNDEQDLRKFG GLSRLLPFTYSMMVIGSLSLMALPFLTGFYSKDLIIELAYGHYSFSGNLVYWLASVAAVF TAMYSIRSLYLTFLGYPNGSKINYQNIHEAPLIMAIPLVVLAVFSIFFGYVTKDLFVGMG TDFYNNALFIHPNHSILVDTEFGLPMSMKFLPLIGSLLGTFGVLAIYWIFDSLPNQFIST SLGRGIYRFFNQKYFFDNIYNNFILNKLLGFGYTTNKILDRGAIELVGPYGLVNVFKSAS NKVASLDSGFIPTYAMYIFSGLILFITLIFFIGDPRLFVLLLWAVFLLPNNTNSTQK* >Mucor circinelloides nad6 ; 197 aa on 'Mucor' MNAILLDLLAFGSVLSGILVITSRNPVISVLFLISTFVNVACYLILLGINFIGLTYLIVY VGAIAILFLFVIMMLNIKLVELQDSSEDYSNPYPLAFVLGTLFVSGLSLTNSNFSKFDLP SIFDSINLLSFKSDALETLTVSHTNWDSVFVSMDQINSIGQVLYTSHALFLIIASMILCL AMVGPIVLCLKPTKRIS* >Mucor circinelloides orf120 ; 120 aa on 'Mucor' MPWIKFMLFYTIFYFNTDNKLYSLYNIIWGLYNIVWSPPGRSTLRSSRGKGLSRCGAPFN NLRVPKTFIKEGRFAPFSTNLIYNIYKHTITTLNNVFKIDTLNYKSRLTRLNISKIKETK *