P1 P2 P3 L3 P3
P4 P5
R.americana#50394: TATAAAAGTTTATTG-GATGTCT-G-ATTATA—-ATA---------TATAAT-AGGA-AAGTCTGGA-CTCA-TTTAAA------
R.americana#50283:ATTTTTTAAAAGTTTATTA-GATGTTT-G-CTTATAT-AAT--------ATATAAG-AGGA-AAGTCTGGA-CTCA-TTTATAA-----
R.americana#50284: TTTAAAAGTTTATTA-GATGTTT-G-CTTATAT-ATT--------ATATAAG-AGGA-AAGTCTGGA-CTCA-TTAATAAA----
R.americana#50633: TTTAAAAGTTTATTA-GATGTTT-G-CTTATAT-ACT--------ATATAAG-AGGA-AAGTCTGGA-CTCA-TTAATAAA----
H.aroides : TAGAATGAAAAAACACTA-AATGCCT-G-CTTA----AAAACGTAAA----TAAG-AGGA-AAGTCTGGG-CTCT-ACTAATAGTAT-
S.ecuadoriensis :
ACTGTATGCTTGTTA-GATGTTC-T-A—------CATAGAC----------T-AGGA-AAGTCCGGA-CTCT-AGCATA------
J.libera : TAAAGGATATTG-AGTATCC-G-CTCTATT—TTAG-------AATAGAG-AGGA-AAATCCGGA-CTTC-TATTTGA-----
J.bahamiensis : TTTGGTTAATATG-GGTACTC-G-CTTGGTG—TTTT------TATCCAAG-AGGA-AAGTCCGGA-CTCC-TTATTAAAAA--
P7 P8 L8 P8 P9 L9 P9 P10 P11
R.americana#50394: AAGTG-CAGGA--TAAAT-TCCTG-CAGAG-AAAA-CTCTAG-GG—-AAA--GT-GTTAAAGAAATATA-
R.americana#50283: GAGTG-CAAGA--TAAAT-TCTTG-CAGAG-AAGA-CTCTAG-GG—-AAA--GT-GTTTTAGAAAAAAT-
R.americana#50284: AAGTG-CAGGA--TAAAT-TCCTG-CAGAG-AAAA-CTCTAG-GG—-AAA--GT-GTTTTAGAAAAAAT-
R.americana#50633: AAGTG-CAGGA--TAAAT-TCCTG-CAGAG-AAAA-CTCTAG-GG—-AAA--GT-GTTTTAGAAAAAAT-
H.aroides : AGGTG-CTGGG--TAATA-ACCAG-CGAAG-GTGA-CTTCAG-GG—--AA-TGT-AATATAGAAAACAA—
S.ecuadoriensis : AGGTG-TTGAA--TAACA-TTCAA-CGAAG-TAAA-CTTCAG-GGA--AA--GT-ATTATAGGAAAC---
J.libera : TTAGA-TTAGT--TAATG-ACTAA-GAAGC-TTAA--GCTTA-GGG-AAA--TT-ACTACAGAAAAACA-
J.bahamiensis : AGATA-CTGGGT-AAC--ACCCAG-CAGAA-CGAA-TTCTAG-GG—-AAA--GT-ATTGTAGAAAGAC--
P12 L12
P12 P13
L13 P13 P14 L14
R.americana#50394: AAAACTCT----TTTTTAATATT---AGAGTTTT-TTGAAA--AGA--TATAA-TCT-AATAATTT------AAAAAA-
R.americana#50283: AAATATTC----TTTCTTTTTAT---GAATATTT-TTGAAAT-GG---TTTAT--CC-TATTATTTAA----ATAA---
R.americana#50284: AAATATTC----TTTGTTTAACATT-GAGTATTT-TTGAAAT-GG---TTTAT--CC-TATTATTTAA----ATAA---
R.americana#50633: AAAGATTC----TTTGTTTAACATT-GAATCTTT-TTGAAAT-GG---TTTAT--CC-TATTATTTAA----ATAA---
H.aroides : AAGC--------GTAT--------------GCTT-ATGAAAT-GG---TATAC--CC-TAGATAAGCA----CTAA---
S.ecuadoriensis : ATTTAAATATT-TTCT-------AGTATTTAAAT--TGAAA--TGAT-TTTA-ATCA-GTCAAAAGT-----GTAT---
J.libera :
TGAGTACTA---CTACAT-------TAGTAAACA-TTGAAAA----------------GAGTAGCAG-----GAGA---
J.bahamiensis : GAATTT------TGTCAT----------AAATTC-ATGAAAA----------------GAATTTCTTTTTA-GTAA---
P14
P11/10 P7 P5 P15 L15 P15 P18
R.americana#50394: AAATTATT----AAAGAA-AC--CC-CACTT-TGAG-CAA-AACC-ATTA----GGTT-GCTAAA-AACAAATAC--
R.americana#50283: TTAAATATTA-----TAAAA-AC--CC-CACTT-TGAG-CAA-AGTC-ATAT----GGCT-GCTAAA-GACATATAC--
R.americana#50284: TTAAATAATA-----TAAAA-AC--CC-CACTT-TGAG-CAA-GGTC-ATTT----GACT-GCTGAA-AACATATAC--
R.americana#50633: TTAAATAATA-----TAAAA-AC--CC-CACTT-TGAG-CAA-GGTC-ATTT----GACT-GCTAAA-AACATATAC--
H.aroides : TGCTTATCTA----ATTGAA-AC-ACC-CACCA-AGAG-CAA-GGCC-GTAA---GTGCC-GCTAAT-AAGCTATA—--
S.ecuadoriensis : GCTTTTTAC--AACAAGAA-AC-TCC-CACCT-AGAG-CAA-GATC-ATAA----GATC-GCTACA-AGTGA------
J.libera : CTGCTCAATC---ATTTGGA-AA-CCC-TCTAA-GAAG-CAA-GA---ATA-------TC-GCTGTA-CTACTATT---
J.bahamiensis :
TGGAAAGATTT-GATTTTGAA-AC--CC-TATCT-GGAG-CAA-GGAT-TTAATAT-ATAC-GCTATA-CATATCTGTT-
L18 P18
P2 P19
L19
P19
R.americana#50394: GTAA-GAGATTGTT-TCAGAGAAAT-AGACATA-CA-TAAAAATTT------TTTT-------AAATTTTTA-GGACAAAA-
R.americana#50283: GTAA-GATATTGTC-GTAGATAAAT-AAACATC-CA-TAAAAA---------ATTA----------TTTTTA-TGACAGAA-
R.americana#50284: GTAA-GATATTGTT-TTAGATAAAT-AAACATC-CA-TAAAAA---------ATAAA---------TTTTTA-TGACAGAA-
R.americana#50633: GTAA-GATATTGTT-TTAGATAAAT-AAACATC-CA-TAAAAA---------GTAAA---------TTTTTA-TGACAGAA-
H.aroides : GTAAA-TATGGCTT-TAAGATAAAT-AGGCATT-GA-CAATAGTATTTTG--TGTGTT-TTTAATAATATTG-CCACAAAA-
S.ecuadoriensis : ATTTTTG--TCACT-GCAGATAAAT-GAACATC-CA-AGAAGAAT-------AAGTG-------ATTCTTCT-AGACAAAA-
J.libera :
GTAA-AATAGTTTT-GAAGTGAAAT-GGATACT-CA-GGAAAAAGAATGGC-AGG----GTCTTCTTTTTTT-GGACAAAA-
J.bahamiensis : GAGA--AATAGATT-TGAGAGAAAT-GAGTATC-CT------------------------------------CGTACAGAA-
P4
P1
R.americana#50394: TCCAGCTT-A-TAAATAAACTTTAAA
R.americana#50283: TCCAGCTT-A-TAGATAAACTTTTAAAAAAT
R.americana#50284: TCCAGCTT-A-TAGATAAACTTTTAAA
R.americana#50284: TCCAGCTT-A-TAGATAAACTTTTAAA
H.aroides : CCCAGCTT-A-TTGTGTTTTTTCATCTA
S.ecuadoriensis : TCCGGCTT-A-TAAACAAGCTACAGT
J.libera : TCCGGTTT-A-TAAATATCCTTT
J.bahamiensis : TCCGGCTT-A-TTGTTAACCA
*Red
nucleotides are conserved in more then >80% of bacterial P-RNA sequences