P1        P2         P3    L3            P3           P4     P5

 

R.americana#50394:    TATAAAAGTTTATTG-GATGTCT-G-ATTATA—-ATA---------TATAAT-AGGA-AAGTCTGGA-CTCA-TTTAAA------

R.americana#50283:ATTTTTTAAAAGTTTATTA-GATGTTT-G-CTTATAT-AAT--------ATATAAG-AGGA-AAGTCTGGA-CTCA-TTTATAA-----

R.americana#50284:    TTTAAAAGTTTATTA-GATGTTT-G-CTTATAT-ATT--------ATATAAG-AGGA-AAGTCTGGA-CTCA-TTAATAAA----

R.americana#50633:    TTTAAAAGTTTATTA-GATGTTT-G-CTTATAT-ACT--------ATATAAG-AGGA-AAGTCTGGA-CTCA-TTAATAAA----

H.aroides        : TAGAATGAAAAAACACTA-AATGCCT-G-CTTA----AAAACGTAAA----TAAG-AGGA-AAGTCTGGG-CTCT-ACTAATAGTAT- 

S.ecuadoriensis  :    ACTGTATGCTTGTTA-GATGTTC-T-A—------CATAGAC----------T-AGGA-AAGTCCGGA-CTCT-AGCATA------

J.libera         :       TAAAGGATATTG-AGTATCC-G-CTCTATT—TTAG-------AATAGAG-AGGA-AAATCCGGA-CTTC-TATTTGA-----

J.bahamiensis    :      TTTGGTTAATATG-GGTACTC-G-CTTGGTG—TTTT------TATCCAAG-AGGA-AAGTCCGGA-CTCC-TTATTAAAAA--

 

                     P7    P8    L8    P8     P9   L9     P9  P10     P11

 

R.americana#50394: AAGTG-CAGGA--TAAAT-TCCTG-CAGAG-AAAA-CTCTAG-GG—-AAA--GT-GTTAAAGAAATATA-

R.americana#50283: GAGTG-CAAGA--TAAAT-TCTTG-CAGAG-AAGA-CTCTAG-GG—-AAA--GT-GTTTTAGAAAAAAT-

R.americana#50284: AAGTG-CAGGA--TAAAT-TCCTG-CAGAG-AAAA-CTCTAG-GG—-AAA--GT-GTTTTAGAAAAAAT-

R.americana#50633: AAGTG-CAGGA--TAAAT-TCCTG-CAGAG-AAAA-CTCTAG-GG—-AAA--GT-GTTTTAGAAAAAAT-

H.aroides        : AGGTG-CTGGG--TAATA-ACCAG-CGAAG-GTGA-CTTCAG-GG—--AA-TGT-AATATAGAAAACAA—

S.ecuadoriensis  : AGGTG-TTGAA--TAACA-TTCAA-CGAAG-TAAA-CTTCAG-GGA--AA--GT-ATTATAGGAAAC---

J.libera         : TTAGA-TTAGT--TAATG-ACTAA-GAAGC-TTAA--GCTTA-GGG-AAA--TT-ACTACAGAAAAACA-

J.bahamiensis    : AGATA-CTGGGT-AAC--ACCCAG-CAGAA-CGAA-TTCTAG-GG—-AAA--GT-ATTGTAGAAAGAC--

 

 

                      P12        L12            P12           P13   L13  P13  P14           L14

 

R.americana#50394: AAAACTCT----TTTTTAATATT---AGAGTTTT-TTGAAA--AGA--TATAA-TCT-AATAATTT------AAAAAA-

R.americana#50283: AAATATTC----TTTCTTTTTAT---GAATATTT-TTGAAAT-GG---TTTAT--CC-TATTATTTAA----ATAA---

R.americana#50284: AAATATTC----TTTGTTTAACATT-GAGTATTT-TTGAAAT-GG---TTTAT--CC-TATTATTTAA----ATAA---

R.americana#50633: AAAGATTC----TTTGTTTAACATT-GAATCTTT-TTGAAAT-GG---TTTAT--CC-TATTATTTAA----ATAA---

H.aroides        : AAGC--------GTAT--------------GCTT-ATGAAAT-GG---TATAC--CC-TAGATAAGCA----CTAA---

S.ecuadoriensis  : ATTTAAATATT-TTCT-------AGTATTTAAAT--TGAAA--TGAT-TTTA-ATCA-GTCAAAAGT-----GTAT---

J.libera         : TGAGTACTA---CTACAT-------TAGTAAACA-TTGAAAA----------------GAGTAGCAG-----GAGA---

J.bahamiensis    : GAATTT------TGTCAT----------AAATTC-ATGAAAA----------------GAATTTCTTTTTA-GTAA---

 

 

 

 

                        P14              P11/10  P7   P5        P15  L15   P15            P18

 

R.americana#50394:    AAATTATT----AAAGAA-AC--CC-CACTT-TGAG-CAA-AACC-ATTA----GGTT-GCTAAA-AACAAATAC--

R.americana#50283:  TTAAATATTA-----TAAAA-AC--CC-CACTT-TGAG-CAA-AGTC-ATAT----GGCT-GCTAAA-GACATATAC--

R.americana#50284:  TTAAATAATA-----TAAAA-AC--CC-CACTT-TGAG-CAA-GGTC-ATTT----GACT-GCTGAA-AACATATAC--

R.americana#50633:  TTAAATAATA-----TAAAA-AC--CC-CACTT-TGAG-CAA-GGTC-ATTT----GACT-GCTAAA-AACATATAC--

H.aroides        :  TGCTTATCTA----ATTGAA-AC-ACC-CACCA-AGAG-CAA-GGCC-GTAA---GTGCC-GCTAAT-AAGCTATA—--

S.ecuadoriensis  :   GCTTTTTAC--AACAAGAA-AC-TCC-CACCT-AGAG-CAA-GATC-ATAA----GATC-GCTACA-AGTGA------

J.libera         :  CTGCTCAATC---ATTTGGA-AA-CCC-TCTAA-GAAG-CAA-GA---ATA-------TC-GCTGTA-CTACTATT---

J.bahamiensis    : TGGAAAGATTT-GATTTTGAA-AC--CC-TATCT-GGAG-CAA-GGAT-TTAATAT-ATAC-GCTATA-CATATCTGTT-

 

 

                    L18    P18                 P2         P19          L19           P19                    

 

R.americana#50394: GTAA-GAGATTGTT-TCAGAGAAAT-AGACATA-CA-TAAAAATTT------TTTT-------AAATTTTTA-GGACAAAA-

R.americana#50283: GTAA-GATATTGTC-GTAGATAAAT-AAACATC-CA-TAAAAA---------ATTA----------TTTTTA-TGACAGAA-

R.americana#50284: GTAA-GATATTGTT-TTAGATAAAT-AAACATC-CA-TAAAAA---------ATAAA---------TTTTTA-TGACAGAA-

R.americana#50633: GTAA-GATATTGTT-TTAGATAAAT-AAACATC-CA-TAAAAA---------GTAAA---------TTTTTA-TGACAGAA-

H.aroides        : GTAAA-TATGGCTT-TAAGATAAAT-AGGCATT-GA-CAATAGTATTTTG--TGTGTT-TTTAATAATATTG-CCACAAAA-

S.ecuadoriensis  : ATTTTTG--TCACT-GCAGATAAAT-GAACATC-CA-AGAAGAAT-------AAGTG-------ATTCTTCT-AGACAAAA-

J.libera         : GTAA-AATAGTTTT-GAAGTGAAAT-GGATACT-CA-GGAAAAAGAATGGC-AGG----GTCTTCTTTTTTT-GGACAAAA-

J.bahamiensis    : GAGA--AATAGATT-TGAGAGAAAT-GAGTATC-CT------------------------------------CGTACAGAA-

 

 

                      P4         P1

 

R.americana#50394: TCCAGCTT-A-TAAATAAACTTTAAA

R.americana#50283: TCCAGCTT-A-TAGATAAACTTTTAAAAAAT

R.americana#50284: TCCAGCTT-A-TAGATAAACTTTTAAA

R.americana#50284: TCCAGCTT-A-TAGATAAACTTTTAAA

H.aroides        : CCCAGCTT-A-TTGTGTTTTTTCATCTA

S.ecuadoriensis  : TCCGGCTT-A-TAAACAAGCTACAGT

J.libera         : TCCGGTTT-A-TAAATATCCTTT

J.bahamiensis    : TCCGGCTT-A-TTGTTAACCA

 

 

*Red nucleotides are conserved in more then >80% of bacterial P-RNA sequences